Roseobase: Dinoroseobacter shibae DFL 12

- Instructions

Searching: Search using a sequence name, gene name, locus, oligonucleotide (15 bp minimum), or other landmark. The wildcard character * is allowed.
Navigation: Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position.

Examples: Dshi:300000..400000, Dshi_0024, Dshi_6031, dmdA, dimethyl sulfoniopropionate demethylase, YP_001533657, MANQPMLKFVKIPKDMPEKRDADTRKQDFDEIYQEY.

[Bookmark this] [Upload your own data] [Hide banner] [Share these tracks] [Link to Image] [High-res Image] [Help] [Reset]
- Search
Landmark or Region:
Reports & Analysis:
  
Data Source
The following 13 regions match your request.
Matches on Dshi
overview_Dshi
dmdA DmdA; DMSP demethylase; in Silicibacter knockout of this gene results in an inability to convert DMSP to methanethiol which is restored with a cloned copy of the gene putative dimethyl sulfoniopropionate demethylase Dshi:2.452..2.453 Mbp (1.107 kbp) score=40
Dshi_1019 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) (dimethylallyl)adenosine tRNA methylthiotransferase Dshi:1.054..1.055 Mbp (1.314 kbp) score=30
dmsA1 Swiss-Prot: Q57366 - Dimethyl sulfoxide reductase [Precursor] PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region KEGG: rde:RD1_3664 dimethyl sulfoxide reductase dimethyl sulfoxide reductase Dshi:2.402..2.405 Mbp (2.673 kbp) score=30
cobT catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Dshi:793.1..794.1 kbp (1.038 kbp) score=20
ribH RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedion e with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not 6,7-dimethyl-8-ribityllumazine synthase Dshi:2.371..2.372 Mbp (552 bp) score=20
ispH catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway Dshi:189.6..190.6 kbp (957 bp) score=10
ksgA dimethyladenosine transferase Dshi:1.221..1.222 Mbp (843 bp) score=10
dmsC dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC) Dshi:1.281..1.282 Mbp (888 bp) score=10
dmsB dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC), 4Fe-4S ferredoxin iron-sulfur binding domain protein Dshi:1.282..1.282 Mbp (747 bp) score=10
dmsA2 dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC), molybdopterin oxidoreductase Fe4S4 region Dshi:1.282..1.285 Mbp (2.787 kbp) score=10
miaA IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity Dshi:1.552..1.553 Mbp (891 bp) score=10
ribC catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine Dshi:2.373..2.373 Mbp (603 bp) score=10
ispE An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis Dshi:3.24..3.241 Mbp (864 bp) score=10

- Tracks
- General
 
- Analysis
 
- Display Settings
Image Width
Highlight feature(s) (feature1 feature2...)
Track Name Table
Highlight regions (region1:start..end region2:start..end)
Key position
- Add your own tracks

For the source code for this browser, see the Generic Model Organism Database Project.

Note: This page uses cookies to save and restore preference information. No information is shared.
Generic genome browser version 1.70