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Enter query sequences here in Fasta format
Or upload sequence file in fasta format:
The query sequence is NOT filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold, Protozoan, and Coelocoel Mitochondrial (4) Invertebrate Mitochondrial (5) Ciliate Nuclear (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold, Protozoan, and Coelocoel Mitochondrial (4) Invertebrate Mitochondrial (5) Ciliate Nuclear (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
Alignment view Pairwise query-anchored with identities query-anchored without identities flat query-anchored with identities flat query-anchored without identities BLAST XML Hit Table
Descriptions 0 10 50 100 250 500 Alignments 0 10 50 100 250 500
Shulei SunScientific Computing Professional Associate [shulei@uga.edu]
Dr. Mary Ann MoranResearch Professor Department of Marine Sciences [mmoran@uga.edu]
University of GeorgiaDepartment of Marine SciencesContact Us
This material is based upon work supported by the National Science Foundation under Grant No. 0315200.
Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
