Annotation Tools

Blast GBrowse Short Sequence Search Precomputed Blast Results Download Files
   

Blast

Find regions of local similarity with Roseobacter sequences.

GBrowse

Access a web-based browser of Roseobacter genomes.

Short Sequence Search

Find short sequences in genes or intergenic regions in Roseobacter genomes.

Precomputed Blast Results

Search a database of pre-computed genome BLAST results.

Download Files

Download Roseobacter genomes and a Java-based genome browser.

 

 

UGA-Marine Sciences    Gordon and Betty Moore Foundation   National Science Foundation
 

References

Alavi, M., T. Miller, K. Erlandson, R. Schneider, and R. Belas. 2001. Bacterial community associated with Pfiesteria-like dinoflagellate cultures. Environ. Microbiol. 3:380-396.

Allgaier, M., H. Uphoff, A. Felske, and I. Wagner-Döbler. 2003. Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl. Environ. Microbiol. 69:5051-5059.

Biebl, H. and I. Wagner-Döbler (2006). Growth and bacteriochlorophyll a formation in taxonomically diverse aerobic anoxygenic phototrophic bacteria in chemostat culture: Influence of light regimen and starvation. Process Biochemistry 41(10):2153-2159.

Biebl, H., M. Allgaier, B. Tindall, M. Koblizek, H. Lünsdorf, R. Pukall and I. Wagner-Döbler (2005) Dinoroseobacter shibae, gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates. Int. J. System. Evol. Microbiol. 55: 1089 - 1096.

Boettcher, K. J., B. J. Barber, and J. T. Singer. 2000. Additional evidence that juvenile oyster disease is caused by a member of the Roseobacter group and colonization of nonaffected animals by Stappia stellulata-like strains. Appl. Environ. Microbiol. 66:3924-3930.

Brinkhoff, T., G. Bach, T. Heidorn, L. F. Liang, A. Schlingloff, and M. Simon. 2004. Antibiotic production by a Roseobacter clade-affiliated species from the German Wadden Sea and its antagonistic effects on indigenous isolates. Appl. Environ. Microbiol. 70:2560-2565.

Buchan, A., J. M. González, and M. A. Moran. 2005. An overview of the marine Roseobacter lineage. Appl. Environ. Microbiol. 71: 5665-5677.

Buchan, A., E. L. Neidle, and M. A. Moran. 2004. Diverse organization of genes of the β-ketoadipate pathway in members of the marine Roseobacter lineage. Appl. Environ. Microbiol. 70: 1658-1668.

Gram, L., H. P. Grossart, A. Schlingloff, and T. Kiørboe. 2002. Possible quorum sensing in marine snow bacteria: production of acylated homoserine lactones by Roseobacter strains isolated from marine snow. Appl. Environ. Microbiol. 68:4111-4116.

Miller, T. R., and R. Belas. 2004. Dimethylsulfoniopropionate metabolism by Pfiesteria-associated Roseobacter spp. Appl. Environ. Microbiol. 70:3383-3391.

Moran, M. A., A. Buchan, J. M. González, J. F. Heidelberg, W. B. Whitman, R. P. Kiene, et al. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913.

Moran, M. A., J. M. González, and R. P. Kiene. 2003. Linking a bacterial taxon to sulfur cycling in the sea: studies of the marine Roseobacter group. Geomicrobiology Journal 20:375-388.

Oz, A., G. Sabehi, M. Koblizek, R. Massana, and O. Béjà. 2005. Roseobacter-like bacteria in Red and Mediterranean Sea aerobic anoxygenic photosynthetic populations. Appl. Environ. Microbiol. 71:344-353.

Pradella, S., M. Allgaier, C. Hoch, O. Paüker, E. Stackebrandt, and I. Wagner-Döbler. 2004. Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine alphaproteobacteria. Appl. Environ. Microbiol. 70:3360-3369.

Selje, N., M. Simon, and T. Brinkhoff. 2004. A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427:445-448.

Swingley, W. D., et al. 2007. The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism. J. Bacteriol. 189:683-690.

Wagner-Döbler, I., V. Thiel, L. Eberl, M. Allgaier, A. Bodor, S. Meyer, S. Ebner, A. Hennig, R. Pukall and S. Schulz (2005) Discovery of complex mixtures of novel longchain quorum sensing signals in free-living and host-associated marine Alphaproteobacteria. ChemBioChem 6(12):2195-206.

 

Shulei Sun
Scientific Computing Professional Associate  [shulei@uga.edu]

Dr. Mary Ann Moran
Research Professor Department of Marine Sciences  [mmoran@uga.edu]

 

University of Georgia
Department of Marine Sciences
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This material is based upon work supported by the National Science Foundation under Grant No. 0315200.

Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s)
and do not necessarily reflect the views of the National Science Foundation.