Exact Sequence and Pattern Search
Source Sequence Type :
DNA
RNA
Protein
Target Sequence/Pattern:
Target Sequence/Pattern Examples:
1. ATCGAT -- exact match
2. ATCNNNNNNGAT -- There can be 6 mismatches between 'ATC' and 'GAT'
3.ATC[4:6]GAT -- [4:6] means there may be 4, 5 or 6 mismatches between 'ATC' and 'GAT'
more examples...
Mismatch Parameters:
Maximum Mismatches per Segment:
Maximum Total Mismatches :
Source Sequence : (
from database
input
)
If '
from database
', please select from genome database:
Combined data:
-- Roseobacter na
-- Roseobacter aa
Individual bacterials:
-- Jannaschia sp CCS1 na
-- Jannaschia sp CCS1 aa
-- Jannaschia sp CCS1 na intergenic
-- Roseovarius nubinhibens ISM na
-- Roseovarius nubinhibens ISM aa
-- Roseovarius nubinhibens ISM na intergenic
-- Silicibacter pomeroyi DSS-3 na
-- Silicibacter pomeroyi DSS-3 aa
-- Silicibacter pomeroyi DSS-3 na intergenic
-- Silicibacter sp TM1040 na
-- Silicibacter sp TM1040 aa
-- Silicibacter sp TM1040 na intergenic
-- Sulfitobacter NAS 14.1 na
-- Sulfitobacter NAS 14.1 aa
-- Sulfitobacter NAS 14.1 na intergenic
-- Sulfitobacter sp EE-36 na
-- Sulfitobacter sp EE-36 aa
-- Sulfitobacter sp EE-36 na intergenic
-- Sagittula stellata E-37 na
-- Sagittula stellata E-37 aa
-- Sagittula stellata E-37 na intergenic
-- Roseobacter sp CCS2 na
-- Roseobacter sp CCS2 aa
-- Roseobacter sp CCS2 na intergenic
-- Loktanella vestfoldensis SKA53 na
-- Loktanella vestfoldensis SKA53 aa
-- Loktanella vestfoldensis SKA53 na intergenic
-- Oceanicola batsensis HTCC2597 na
-- Oceanicola batsensis HTCC2597 aa
-- Oceanicola batsensis HTCC2597 na intergenic
-- Oceanicola granulosus HTCC2516 na
-- Oceanicola granulosus HTCC2516 aa
-- Oceanicola granulosus HTCC2516 na intergenic
-- Rhodobacterales bacterium HTCC2654 na
-- Rhodobacterales bacterium HTCC2654 aa
-- Rhodobacterales bacterium HTCC2654 na intergenic
-- Roseobacter sp MED193 na
-- Roseobacter sp MED193 aa
-- Roseobacter sp MED193 na intergenic
-- Roseovarius sp 217 na
-- Roseovarius sp 217 aa
-- Roseovarius sp 217 na intergenic
-- Roseovarius sp HTCC2601 na
-- Roseovarius sp HTCC2601 aa
-- Roseovarius sp HTCC2601 na intergenic
-- Dinoroseobacter shibae DFL12 na
-- Dinoroseobacter shibae DFL12 aa
-- Dinoroseobacter shibae DFL12 intergenic
-- Roseobacter denitrificans Och114 na
-- Roseobacter denitrificans Och114 aa
-- Roseobacter denitrificans Och114 intergenic
-- Rhodobacterales bacterium HTCC2255 na
-- Rhodobacterales bacterium HTCC2255 aa
-- Rhodobacterales bacterium HTCC2255 intergenic
-- Roseovarius TM1035 na
-- Roseovarius TM1035 aa
-- Roseovarius TM1035 intergenic
-- Roseobacter SK20926 na
-- Roseobacter SK20926 aa
-- Roseobacter SK20926 intergenic
-- Roseobacter sp. AzwK3b na
-- Roseobacter sp. AzwK3b aa
-- Roseobacter sp. AzwK3b intergenic
-- Oceanibulbus indolifex HEL-45 na
-- Oceanibulbus indolifex HEL-45 aa
-- Oceanibulbus indolifex HEL-45 intergenic
-- Hoeflea phototrophica DFL-43 na
-- Hoeflea phototrophica DFL-43 aa
-- Hoeflea phototrophica DFL-43 intergenic
-- Phaeobacter gallaeciensis BS107 na
-- Phaeobacter gallaeciensis BS107 aa
-- Phaeobacter gallaeciensis BS107 intergenic
-- Roseobacter litoralis Och149 na
-- Roseobacter litoralis Och149 aa
-- Roseobacter litoralis Och149 intergenic
-- Roseobacter HTCC2150 na
-- Roseobacter HTCC2150 aa
-- Roseobacter HTCC2150 intergenic
-- Octadecabacter antarcticus 238 na
-- Octadecabacter antarcticus 238 aa
-- Octadecabacter antarcticus 238 intergenic
-- Octadecabacter antarcticus 307 na
-- Octadecabacter antarcticus 307 aa
-- Octadecabacter antarcticus 307 intergenic
-- Phaeobacter gallaeciensis 210 na
-- Phaeobacter gallaeciensis 210 aa
-- Phaeobacter gallaeciensis 210 intergenic
-- Rhodobacterales bacterium HTCC2083 na
-- Rhodobacterales bacterium HTCC2083 aa
-- Rhodobacterales bacterium HTCC2083 intergenic
-- Rhodobacterales bacterium Y4I na
-- Rhodobacterales bacterium Y4I aa
-- Rhodobacterales bacterium Y4I intergenic
-- Roseobacter GAI101 na
-- Roseobacter GAI101 aa
-- Roseobacter GAI101 intergenic
-- Ruegeria R11 na
-- Ruegeria R11 aa
-- Ruegeria R11 intergenic
If '
input
', please input the sequence in FASTA format:
Output Alignment:
Please specify the number of bases before and after the match range:
(chars)