Annotation Tools
Blast GBrowse Short Sequence Search Precomputed Blast Results Download Files
   

Blast

Find regions of local similarity with Roseobacter sequences.

GBrowse

Access a web-based browser of Roseobacter genomes.

Short Sequence Search

Find short sequences in genes or intergenic regions in Roseobacter genomes.

Precomputed Blast Results

Search a database of pre-computed genome BLAST results.

Download Files

Download Roseobacter genomes and a Java-based genome browser.

 

 
UGA-Marine Sciences    Gordon and Betty Moore Foundation   National Science Foundation
 
Blast Annotation Tool
Choose program to use and database to search:

Program Database

Enter here your input data as   

Or load it from disk

Please read about FASTA format description

Set subsequence: From         To

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Limit search to results of Entrez query

Other advanced options:        Show Tax Blast reports

NCBI-gi      Graphical Overview    Alignment view
Descriptions    Alignments Color schema

Comments and suggestions to:< blast-help@ncbi.nlm.nih.gov >
Last modified: Jan 11, 2002

NCBI BLAST Entrez ? 		 

Shulei Sun
Scientific Computing Professional Associate  [shulei@uga.edu]

Dr. Mary Ann Moran
Research Professor Department of Marine Sciences  [mmoran@uga.edu]

University of Georgia
Department of Marine Sciences
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This material is based upon work supported by the National Science Foundation under Grant No. 0315200.

Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s)
and do not necessarily reflect the views of the National Science Foundation.