LOCUS RTM1035 4212272 bp DNA linear CON 26-JUL-2006 DEFINITION Roseovarius sp. TM1035. ACCESSION VERSION KEYWORDS . SOURCE Roseovarius sp. TM1035 ORGANISM Roseovarius sp. TM1035 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius. REFERENCE 1 (bases 1 to 4212272) AUTHORS Belas,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (25-JUL-2006) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA FEATURES Location/Qualifiers source 1..4212272 /organism="Roseovarius sp. TM1035" /mol_type="genomic DNA" /strain="TM1035" /db_xref="taxon:391613" gene <1..706 /locus_tag="RTM1035_00005" CDS <1..706 /locus_tag="RTM1035_00005" /note="COG1651 Protein-disulfide isomerase" /codon_start=2 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="jcventer:1101493006644_RTM1035_00005" /db_xref="CDD:48572" /translation="DDRGAVGHFTEGKTNMNRRGLVLSVLAVGAAGFGGAAWYATRPQ PIAEAVPVAPEVNDVLIRPYSPILGPETAPVTIVEFFDPACEACRAFYPVVKDIMTEH GDAVRVVIRYTAFHGDASVEAIRVLEAARMQHVFEPVLEAVLREQPRWASHGTPAPGL ILEIAASGGLDVEAARTQMLAPGVVAVLNQDRADVEAVGVRQTPTFFVNAKPLDPFGE AELRRLVAAEVAASQS" gene 735..1202 /locus_tag="RTM1035_00010" CDS 735..1202 /locus_tag="RTM1035_00010" /note="COG2847 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00010" /db_xref="CDD:32675" /translation="MTKLSYINGLTLVLLLSGMSTPAFAGSEDVVVENAWSRASIGVN RPGAAYMTVRNTGEDTVTLTGLTTPLAVMPQIHETKTNADGVSSMAPADEITIEPGQS VALEPGGLHAMLMKLQNPMIEGETFPLTLTFSDGGEVTVEVPILGIAARGPES" gene 1340..1828 /locus_tag="RTM1035_00015" CDS 1340..1828 /locus_tag="RTM1035_00015" /note="COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems" /codon_start=1 /transl_table=11 /product="SCO1/2 family protein" /protein_id="jcventer:1101493006644_RTM1035_00015" /db_xref="CDD:48517" /translation="MDFRLTDHEGNEVGPEALIGRPTMVFFGFTYCPDVCPTTLSDIS GWLEDLGDDAARMNVVFITVDPERDTAEAMAEYVGYFHPAIRGWTGPEDQISRAVEAF RASYERVPTEGGDYTMNHTASVFLFDAKGELVTMIDYHEPREFAVPKIRRALTEDVEG AT" gene 1825..3198 /locus_tag="RTM1035_00020" CDS 1825..3198 /locus_tag="RTM1035_00020" /note="COG0739 Membrane proteins related to metalloendopeptidases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00020" /db_xref="CDD:31082" /translation="MNIRIVLASAVVAGAFSVTAIAISGVLSKEPVPPAIAEATLWTP DPLSMPQIADYDVTTPAAFHADNASPMRPLPLLQSVFAETALPEIEPPLITWSREIAS GETLDAVLANAGIAAPARAEIALALGAEYDLRRLRPGHEITVISKVDGNPSRVELAVD DGVRIETVFGQELVTRVLEPDPEMVTFAGEAVIESSVFAALDKAGIPARFAVDMAQML GGTVDFRRELSGGETMRLLWREARDGNERIGQPELAFAALNLGETVYEIVWPDDGSGK ATIYVDGEVLRVFAQPVEGARLSSVFGRRTHPVYGNVRMHTGVDFAAASGTPVKATAP GRVSFIGRRGGYGRVVEIAHGSDTLTRYAHLSEVPDTLEQGQRVMAGDMIGRVGATGT ATGPNLHYEVLVDGRPTDPLSDDRLAEAAERDADDTAALERLAEARTLLAERLTSEFM QTTTERL" gene 3202..3660 /locus_tag="RTM1035_00025" CDS 3202..3660 /locus_tag="RTM1035_00025" /note="COG3019 Predicted metal-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00025" /db_xref="CDD:32836" /translation="MKRLALALAVTLALFPAAQAVADAIQIDVRKTNGCGCCLSWMKH LEESGFAPTGEDMFGGSLVRFKLDNGVPQRMVSCHTALVDGYVIEGHVPASDIQRLLD ERPDAVGLAVPGMPYGSPGMGPEDDREAYEVFLIRGDGSTEIFSSYSAAD" gene 3683..4468 /locus_tag="RTM1035_00030" CDS 3683..4468 /locus_tag="RTM1035_00030" /note="COG0428 Predicted divalent heavy-metal cations transporter" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00030" /db_xref="CDD:30777" /translation="MEPFSPITLGFLGSLAAGSLTAVGAIPVLFGRIPSRATRDLLLG FAAGVMLAASFFSLIIPALDAAEGQFDNGALPAAIVCVAILLGMGAVALMNEWLPHEH FKTGREGPDAASLRRVWLFIIAITIHNFPEGLAVGVGFGADGLSGGLPLAIGIGLQNA PEGLAVAVSLLGEGYSRRRAWGIAALTGLVEPVGGLLGAGIISISQPLLPWGLAFAAG AMLYVISHEIIPETHRSGHQNRATLGLAAGLVIMLFLDVWLGG" gene 4449..4943 /locus_tag="RTM1035_00035" CDS 4449..4943 /locus_tag="RTM1035_00035" /note="COG0597 Lipoprotein signal peptidase" /codon_start=1 /transl_table=11 /product="putative lipoprotein signal peptidase" /protein_id="jcventer:1101493006644_RTM1035_00035" /db_xref="CDD:30942" /translation="MYGWEDEMKLTHFQGFIAAGTAFLVDQVTKAIVVANAADLSAGI PVFPGFNLIYLRNDGVTFGLLGGAPWWSLTALALAVCGWLTVMLVRTANPVEAIAYGA IIGGALGNVLDRIRFRSVTDFLDFYVGSTHWPAFNMADVFVVSGVGLLLIAPWLSAKL KTGT" gene 5147..6511 /gene="lnt" /locus_tag="RTM1035_00040" CDS 5147..6511 /gene="lnt" /locus_tag="RTM1035_00040" /EC_number="2.3.1.-" /note="COG0815 Apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="jcventer:1101493006644_RTM1035_00040" /db_xref="CDD:31157" /translation="MGQFGFGVSWIAESFYVDSERFGALAIPAVAGLSAGLAIFPAIA AMLFATIMQRRAVGDTTAGLLLATCWVAAEWLRGHVLTGFPWNLAAYALVEHAALRQP AAWVGSYGLSFLTVFIGLLPGVLIVAAPNRRVPVLVLFAVVVMGLWGGGALRLGTNVP PTDSALRIVQGNVPQVEKWAPGSRERTLEKYLGLSAQPGRFDLLLWPETAFPGFLDED ALARRRLSTVLPDGRILLTGVPDRVEGDGGTRYFNTVQAYDGSGEILTGYAKHHLVPF GEYVPLRGWLPIERLTEGLGDFTPGPGPRTLAIPGAPLVAVAICYEIIFPGQVVDDLF RPDWIFNATNDAWFGTSIGPEQHLASARMRAVEEGLPVVRAANTGISAIIDAKGEIIA RLETGQTGVIDASLPTALAPTPYARFGDWTSLALICAVWALAFTVGLVRRRFNSEKSK SEES" gene 6511..6678 /locus_tag="RTM1035_00045" CDS 6511..6678 /locus_tag="RTM1035_00045" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00045" /translation="MLVLAGFVGGALWGGYLAQRRKGNRLDILQYATSFGIAFGLLAF FASVILLRITS" gene 6703..8640 /locus_tag="RTM1035_00050" CDS 6703..8640 /locus_tag="RTM1035_00050" /note="COG2366 Protein related to penicillin acylase" /codon_start=1 /transl_table=11 /product="putative penicillin acylase (penicillin amidase)" /protein_id="jcventer:1101493006644_RTM1035_00050" /db_xref="CDD:41830" /translation="MKRLFNILLYLLLAVFALGLTVSGVVYFLLRASVPDYDEDFSVA GIEGPVDILRDAAAIPHISADSAPDAYFALGFVHAQDRLGQLLRARRAAQALMPLDRT IEVEPSTAQALDAYAAGVNAWLGLVSEGGRGRGSPDLLIADERMIAAWRPVDSLRLAQ AFLNDLQPERRQNDLSGLSDLPIPSDRPLLPELFVTSPKVSLDAWALPGDRTATGAPI LAADIRGPLSLPSEWYLADIQLPTGAAIGATLPGVPFIVVGRSERVAWAFRSVSQKAV KEPENPTAAQASNFLMMLDRLARSADVNDAMDACMNLSPAGLEILAIDRETLARWPDR EVETPLSFRDARLAALDERQPIFSVEGAITVQRDTVSAAARALLPIMAKELWFVGSTG ALEENRADELRGDILDQLAQWNGDMDRFSPEPLVFWAWARALQKRILQDEFPSATKVW ARPNPDVLFAVLSDRGGSAIWCDIRPSTRIETCQDQVRAALDDAIGWLVDRYGPDPSA WAWGEAHALNMGWAPIRSSGIISDLLSLEAPSSGDPDTLIATLFTSDNDRPFATSAGT NFQAVMSFSEEAGSYFIAPAGQSGHPLSRFYENLFPMWMQGKYLPMSTDLSLAQGGAV GTSRLSPVSVDGPAIQHDRSQ" gene 9003..9629 /locus_tag="RTM1035_00055" CDS 9003..9629 /locus_tag="RTM1035_00055" /note="COG3336 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="jcventer:1101493006644_RTM1035_00055" /db_xref="CDD:33145" /translation="MGLLAHPVTATAALITSLFIWQIPVLYGLAQRIAAIEVFAHFAM VLAGIWYFGMLFDPRDPPEGARRGARLISGFAVIVSNIFLGSLTTLKEVSLYASYQTA GTGLLDPLSDETMGGYTIWVPSSMLMIAAIILVMNGWNAAEVRRWNSRYELVRGSNSA ALEFPETAEELRLKVAKPNRDMGRTLAIGALVMFFIVMTTVVTIVYAL" gene complement(9867..10337) /locus_tag="RTM1035_00060" CDS complement(9867..10337) /locus_tag="RTM1035_00060" /note="COG1321 Mn-dependent transcriptional regulator" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator of mntH" /protein_id="jcventer:1101493006644_RTM1035_00060" /db_xref="CDD:31512" /translation="MTKLQSQEHEPFETVDRAPEAQAEGFATVRQAHESEMAEDYVEL IAELIESRGEARPVEIAERFGVKPPTVTKNISRLKAAGLVRREPYRAIFLTDAGRELA EACRRRHRIVVAFLLSLGIDEETAERDAEGIEHHVSTTTLEAFEHALLQSESGK" gene 10432..12312 /locus_tag="RTM1035_00065" CDS 10432..12312 /locus_tag="RTM1035_00065" /note="COG1858 Cytochrome c peroxidase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00065" /db_xref="CDD:32043" /translation="MIQKFLGAFIVALASALVLSGPVAATPAKEAPWLPEAAAYRLTL FLGNLEPLPWDDVGTAWAEPYRGSEFSVGALAWLDGNSDIGPAPLLDAITREDRQAVF AEATRLIARRIDEELDRAVMADDPARAQQAVRTARELYRSFADGIAAADPDASRRIGL AWLELNSSTGSAGVLGAGATPASRKTMEAAREVISLYLAENYLVDDFAPRRTLSALPE TVVLSGRTIEVPPSLPPGSDIFDQDPLPRLVLNFEEQGIDETDLPLVAYGDMLFDSAQ IFGNPAQGLGVACSTCHNRSDVNQRLFIPGASHQPGAIDVDGAFFNPIFNDRRDDPID IPSLRGLRFTGPYGRDGRFASLRDFTRNVIVNEFGGDEPTPFMLDALLAYMLEFDFLP NSMLTPDGQLTEAAPEAAQRGEAIFNTPFAALGDRSCSSCHVPDTNFLDRQAHDIGSV ALAYDGARTGAMDTPTLLGTVYTAPYFHDGSLPTLAAVVDWFDESKALGLTGAERADL TAYLETVGAADEPYEAFDAENTAFRLAFSELTTFASTLDTLLPQRDAKHILLLTDTVA ADLSADASTMSNLAARPEVYALAQRLAEVGDAVRTDDWVAAETSWTAFKSEADAIEER AF" gene 12312..13187 /locus_tag="RTM1035_00070" CDS 12312..13187 /locus_tag="RTM1035_00070" /note="COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="phosphonate ABC transport phosphonate binding component" /protein_id="jcventer:1101493006644_RTM1035_00070" /db_xref="CDD:33034" /translation="MAIHMNRRTMLALAAAGAVSLATPLAAQDTALRLAFIPQENPEK LLGDIEAITGWLASEIDVPVEGFVTIDHAAAVEALRNGDADISFMGALPFVLAEAEIG AVPLLSEVYRDAPSYTGRIFVRRDSGIAGLADLRGRDIAFADPISESGYLYPLAEFVE AGLIDGPGAAEAFFGRVFFAGGYQQAMQAMAEGLVDAAGASQYADLLLTPQQQAQVTW IAESPPIPSHVVIARPGLDAEVQDRFTNAMLQLNEPENRDKLRYLYGPDGYVRADSAA YGGVRDMARRYGLLE" gene 13184..13966 /locus_tag="RTM1035_00075" CDS 13184..13966 /locus_tag="RTM1035_00075" /note="COG3638 ABC-type phosphate/phosphonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC phosphate/phosphonate transport system ATPase" /protein_id="jcventer:1101493006644_RTM1035_00075" /db_xref="CDD:48289" /translation="MNIAIRIDDLNFAHPGGSVPALERVSLTISTGESVALLGPSGAG KTTLLALLDGRLQGWRGRVSVLGAPLDPDQPPPRASRPDTGFVFQEFALVERSTVLRN VLNGRLGRMAPLRALLGSPTPHDLDIARTALTDCGIADLAERRVDSLSGGQRQRVAIA RCLAQEPRLILADEPVSNLDPTRAGEVLALLTGAAQARGATALFSSHQPDLARRFAQR IIGMRDGRIAFDVPTSELNDDATAELYREVEPIPGIGLRAVS" gene 13966..14724 /locus_tag="RTM1035_00080" CDS 13966..14724 /locus_tag="RTM1035_00080" /note="COG3639 ABC-type phosphate/phosphonate transport system, permease component" /codon_start=1 /transl_table=11 /product="PhnE, subunit of alkylphosphonate ABC transporter" /protein_id="jcventer:1101493006644_RTM1035_00080" /db_xref="CDD:33437" /translation="MAFRGFGGFATSGLIAAAIVWSFATTDVELSRLMSAGPRIADFL GRMVPPDPTVMAEIRKGSAETLRIAILGTLGAVILSVPLGILASETMVSRAVFRPIRT LLAFIRAIPLILVAMLMVGAVGLGPLPGIIAVAFHATGMLAKFYAEAIDGVPRAPIAA LESAGAGPLVRLRHAIWPQMAPVVARDTIFRFELNLRESLILGIVGAGGIGFYIQTYV RSFQYDKAASVTIAVVVMVIAIEAINVTLRRRFT" gene complement(14728..15204) /locus_tag="RTM1035_00085" CDS complement(14728..15204) /locus_tag="RTM1035_00085" /note="COG3034 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="ErfK/YbiS/YcfS/YnhG" /protein_id="jcventer:1101493006644_RTM1035_00085" /db_xref="CDD:32849" /translation="MGGFAAFLSGCASKFRSYNGPEVTRLRMYKGQRLLVLDGADDVL RTYPIGLGFAPEGHKQFEGDGRTPEGSYEIDRRNPDSLFHLSIGISYPNEADIAFAEA QGKSPGGDIFVHGGPRKGIDPMNVRDWTAGCIAVTDRQIEEIYAMVRDGTPIDIYA" gene complement(15304..17472) /locus_tag="RTM1035_00090" CDS complement(15304..17472) /locus_tag="RTM1035_00090" /note="COG2217 Cation transport ATPase" /codon_start=1 /transl_table=11 /product="Cation transport ATPase" /protein_id="jcventer:1101493006644_RTM1035_00090" /db_xref="CDD:32399" /translation="MVGPKVGGTEHLAFDVINGRMTILDTAVGISDNEVSQLVASTGM STKPWDADNAAEDQAAHLARQKRFTSLSGGFWAAGFLFHIVETGMGGALGLFAGHGEV PMPMAEAGIFAVAILFGVWLVAPKAWSSARRLSPDMNLLMVVAVAGAIGLGEFFEAAT VAFFFSLSLYLESWSVGRARNAVSSLLDLAPPTARVLYDDGSEADVPAAAVAVNARFI VRGGDRIPLDGEVVDGAGAVDQAPITGESALVPKEPGDEVYAGTINGEGTLTVRATKA ASDTVLAKIIRMVGDAHARRAPVEQWVAKFARIYTPIVMALAIAIALVPPLLLGGAWD YWFYNALVLLVIACPCALVISTPVSIVAALTASARAGVLIKGGAYVEAPGRTTALAMD KTGTITMGEPEVAAVHPLVGVSARDLMALAASLEARSSHPLARAILSRAEADGVSVSA AEDTRTVPGRGLEGRADGRAIWLGSDRFAEEKGFGNAIPADLRDRIEGAGSTLVAVGD ETGVTGVLELRDRIRPDAKGIVARLHAQGVKTIVMLTGDNERTARAVAAEVGIDEVRA DLLPEDKVTAIEELVATHDMVAMIGDGVNDAPAMARAHYAIAMGAVGSDAAIETADIA LMTDDLARVPWLIAHSRRTMTIIHQNIGISLATKALFVGLTAFGMASMWGAIAADVGV SLLVVANALRLLNGHRIKDGPSGGEPVGEQMAKGALAHGH" gene 17870..18139 /locus_tag="RTM1035_00095" CDS 17870..18139 /locus_tag="RTM1035_00095" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00095" /translation="MLQKYAVIMVATLALAGCAVPSKEDNDPFRIGNVPESVAALAAP DQDLITARLRPEDNCYWYAHSGPVETTLVPLRSAGGNPICVARQS" gene complement(18179..18844) /locus_tag="RTM1035_00100" CDS complement(18179..18844) /locus_tag="RTM1035_00100" /note="COG1376 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="Twin-arginine translocation pathway signal" /protein_id="jcventer:1101493006644_RTM1035_00100" /db_xref="CDD:31566" /translation="MLTRRHFIQTTAALFSASISSPLLADTWPTEAEKAAWDAQITPP GYNPATSNPWGLHPRFLPQRVITKDGLVAGDIHVDAVARYLYHIEEGGTAMRYGVAIA RGKLYEPGVYTIKRKVRWPHWQPTQNMIDRDPELYADIADGMEPGPENALGSRALYLY VGDRDTYLRIHGTPQPRSIGGRASSGCVRMVMAHINDLYPNVEIGSTAFLYSAEDSVT PQS" gene complement(19280..19630) /locus_tag="RTM1035_00105" CDS complement(19280..19630) /locus_tag="RTM1035_00105" /note="COG0640 Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family protein" /protein_id="jcventer:1101493006644_RTM1035_00105" /db_xref="CDD:47725" /translation="MMQVFADRNAAAAGIERRAKLFRGLADPSRLAILGVLCEGPLVV HEIVKRTGLSQPNVSNHLRCLLDCGLVASDRDGRFIRYRISSPRIAALLNDVDALLDV VAEGVGACDNYREA" gene 19753..20541 /locus_tag="RTM1035_00110" CDS 19753..20541 /locus_tag="RTM1035_00110" /note="COG2217 Cation transport ATPase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00110" /db_xref="CDD:31423" /translation="MDCAKDAAQIERAAQSAGVAPDAVKVSAATHIMTLKVPEASLPE IEKAVETTGYGFDRIESDEDLQQSAAHQDPGYRRALWIVVILNVGYGVLEMIGGFIAG SQAVKADALDFIGDGAITFLGLLAIGWSLLWRARSALIQGIFLGLLGLGVFSTTIIRA FEPTTPDATLMGILGLIALVINVISVLPLLRYRKGDANMRAVWLFSRNDAIGNAAVVI AAGLVVWLGSAWPDLIVAFGIAGLFLHSSWAIIRDARADLKAVA" gene 20493..21047 /locus_tag="RTM1035_00115" CDS 20493..21047 /locus_tag="RTM1035_00115" /note="COG0597 Lipoprotein signal peptidase" /codon_start=1 /transl_table=11 /product="Peptidase A8, signal peptidase II" /protein_id="jcventer:1101493006644_RTM1035_00115" /db_xref="CDD:30942" /translation="MGDHPRRAGRSEGGGMNSRVLGGLCAIAAFGVDQGTKALALNSP ALENGVEVLPFLNLVRVLNDGVSFGMLGGVVPWWGLVALAAVVVAWLLIWLWKAPDGL TGAALGLIIGGALGNILDRLRYQAVPDFLDFHYGSYHWPSFNLADVAIFCGAALLFWD SFRTSKVRPENREQDNRKGDVTGG" gene 21094..21606 /locus_tag="RTM1035_00120" CDS 21094..21606 /locus_tag="RTM1035_00120" /note="COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component" /codon_start=1 /transl_table=11 /product="conserved hypothetical permease protein" /protein_id="jcventer:1101493006644_RTM1035_00120" /db_xref="CDD:34283" /translation="MDWIDRGIRGIGVVTAWLTVVSIAAYGALQMLDRKLQLGVSSYL PDLSTSLLFILIFLTFGYTYLRDGHVRVDVLRRHWSARRIAWIELIGGLFVLLPLAAI LTYYGWDGLMRTTKYAETQLWAQRIAGVIGPILLALAGMIVALRNIAFLTGRRAQGAP EQASGLHNGE" gene 21599..22858 /locus_tag="RTM1035_00125" CDS 21599..22858 /locus_tag="RTM1035_00125" /note="COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component" /codon_start=1 /transl_table=11 /product="putative C4-dicarboxylate transporter family protein, DctM subunit" /protein_id="jcventer:1101493006644_RTM1035_00125" /db_xref="CDD:34282" /translation="MNEVLTVAMLVVMAIGVFSGFPVALVLAGTGFLGFVAAVWVGIT DFQHLGLIYLRARGVLTNESVQFTSVPMLIFLGLILNASGIAETMFRLLGRLLTGVPG RYAIATLLIGLVLAPAAGVIGASVITVALVAYAPMMASGYAPRTAGGAVAASGALGVV FPPAVMLFFISNVFYLRIGLMYVALIVPVLLMVMAFAVYFAVTLRKTVEIPLDTPKTN LVSDLLFVLASVAVIASIPLSIILGFATLTEAAGVGVFGALLVALARKRLSFSSLNSV TVQTSTMTSMVYFIVLGASVFSLSFHLVGGPDVIFEWISAFDLTRWELLAILLGVIII LGFVFDWIEVLLVFVPVLMPIFSELDFADHVGSAYFAQIWIAGLIALALQTSFLTPPF GYALFFAKMAAPNRLLKKSALDAVMRT" gene 22896..24074 /locus_tag="RTM1035_00130" CDS 22896..24074 /locus_tag="RTM1035_00130" /note="COG3666 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="transposase, IS4" /protein_id="jcventer:1101493006644_RTM1035_00130" /db_xref="CDD:33464" /translation="MRGTDEASGSLFSYVDLEQRVPDRHPLRLIRRVVNDALASLDAE FAALYTDFGRPSIAPERLIRASLLQLLFSIRSERQLMEQMNYNLLFRWFVGLGIDDPV WVPTVFTKNRDRLLTTDMSRKLMAAILAHPEVRPLLSDEHFSVDGTLVKAWASMKSFQ PRNSAPPPHDDDPGGPPPPADATFANTEPQPQQTETQPMPDTPRHIRNAAVNFRGQKR SNATHISVTDPDARLYKKAPGAAATLCFMGHTLMENRNGLIVQADLTHADGYGERKAA LEMINRHSPGSTRRLTLGADKGYDSANFVAALRRMVVTPHVAQKARSSAIDGRTTQHP GYALSQRRRKKIEEPFGWAKTVGGMAQTVHRGLDRVRAQFTMTMAACNLARLPKLLAP " gene 24294..24851 /locus_tag="RTM1035_00135" CDS 24294..24851 /locus_tag="RTM1035_00135" /note="COG3547 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="transposase, ISlxx2" /protein_id="jcventer:1101493006644_RTM1035_00135" /db_xref="CDD:42350" /translation="MQLIRTLAAWRPDLTGFRDVEESYKIALKSLARRYLELHDEVAD LDDMIEAIVTDLARYLIACSGIGFTSAAQLLLTAGDNPERLRSEASFAALCGVSSVPA SSGKTTRHRLNRSGDRAANSALHIIAIGRLRLDSKTKEYVARRIAQGHSKLEAIRCLK RYIAREVFNIIARRHKQINQAQIAA" gene 24904..25164 /locus_tag="RTM1035_00140" CDS 24904..25164 /locus_tag="RTM1035_00140" /note="COG2801 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="putative transposase protein" /protein_id="jcventer:1101493006644_RTM1035_00140" /db_xref="CDD:40748" /translation="MLAAREIKISMDGKGAWRDNVFVERLWRTIKYEEVHLRAYASVS EARAGIGRYLAFYNSRRPNSSLDGKTPDQAYFNQPMPEAVAA" gene 25317..25523 /locus_tag="RTM1035_00145" CDS 25317..25523 /locus_tag="RTM1035_00145" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="jcventer:1101493006644_RTM1035_00145" /translation="MRSLLYEAATVILTRSLADSDLRTWGLKLKGRIGFKRAAVVVAR KLAVIMHAMLRDDTPFVRVAKAAT" gene 26269..26463 /locus_tag="RTM1035_00150" CDS 26269..26463 /locus_tag="RTM1035_00150" /note="COG5659 FOG: Transposase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00150" /translation="MACEMTEKLLGEGAPSAFVLTHVVYSSDYGFPHMLEDRGQPYAL AVRSTHNLHFLEERRWYRQT" gene 26959..27459 /locus_tag="RTM1035_00155" CDS 26959..27459 /locus_tag="RTM1035_00155" /note="COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component" /codon_start=1 /transl_table=11 /product="Tripartite ATP-independent periplasmic transporter, DctQ component" /protein_id="jcventer:1101493006644_RTM1035_00155" /db_xref="CDD:34283" /translation="MIIRAIDGLNETVGRIVSVVAIVFAAFIIYDVFMRYVLNDPTRW AFDVTKQMFGFYFVLLGGYALRHQAHVRVDLLTANLSETPARIVDALGYLIFFFPFAW VFTTRSYEFAMRSYAQGETTYGSVQLPVYPLKMAMAAAAALLLLQGIAEVLKLVFNRQ EVRSDA" gene 27476..28771 /locus_tag="RTM1035_00160" CDS 27476..28771 /locus_tag="RTM1035_00160" /note="COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter, DctM subunit" /protein_id="jcventer:1101493006644_RTM1035_00160" /db_xref="CDD:34282" /translation="MFGLLLLGLFMGHPLAFVLGGTAVLGALIAGKPMVLGIVINRIF GDVLDNFTLIAIPLFVLMARFLSDSGVTDRMFESLRLMMSNVRGGLALAVVFISILLA ATTGIIGASITVMGVMALRPMLQYGYSPTLTTGVIAASGCLGILIPPSIMLILMASYS PLSVGELFAGAMIPGILLGLLYAVWVVIVAFVRPDMAPAVESDEKVSRSALLKMLAIE AVPPLVLILGILGSLLAGIATATEASAIGAMLALLIVIFRGKFRWISFYGAMLETGRT SAMILFIVIGATAFTGVFNITGGLRATQEIIRGMDMEPWMLITMMLFIVFILGAFLDW TGIVLLSFPIFLPIVQEMDVSLLWFVVLMSVVLQTSFLTPPFGYALFYLRAIAPKSVK TSQIIIGVLPFIGLILIMCLGVAIFPQLVTWLPETLYTK" gene 28787..29878 /locus_tag="RTM1035_00165" CDS 28787..29878 /locus_tag="RTM1035_00165" /note="COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="conserved hypothetical extracellular solute-binding protein,family 7" /protein_id="jcventer:1101493006644_RTM1035_00165" /db_xref="CDD:34281" /translation="MLTKITLVTGLALAAGIATQSAAQESWTMTTTWPSSLELIEIDK HFVDLANKLTGDALTIEFFEGGALVPAGEVFGAVESGTIQAGGDWPGYWAGRDSAFSP LATTASLFNAIDYVNWIEQWGGADLYNEIYGKFGMVYLPYGVTNNESGFRTNEPIVTL EDLQGKRLRLSGLEQGRLLEKLGGNQVSMAGGEIYQSLERGVIDGAEFSTPNVDYSGG FHQVTKFWATPGWHQSASVFGVMINKASWDALSPETQEDLKIAAQANLIWSLSFTEKR ATEAYQQFKDAGIEITRYDDETLARVQELANEVIIETACENPASAKVYLSQLEYLADY AKWRDASAPFNLGRSPNGPDIEAIRACAN" gene complement(30115..33201) /locus_tag="RTM1035_00170" CDS complement(30115..33201) /locus_tag="RTM1035_00170" /note="COG0841 Cation/multidrug efflux pump" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="jcventer:1101493006644_RTM1035_00170" /db_xref="CDD:31183" /translation="MAFSISGASIQRPVAVWLLILFCLLGGYWGLNTVGRLEDPSFTL KTALVFVPYPGATAVEVEEEVSDVIENALQQMKQLDRVESKSMPGMAQITVEIEGTYG PDEIPQVWDEMRLRISDVQDDLPQGARAPIVNDDFGDVYGMFYAVKTEGLSPREERDL ATRLRLGLVTVDGVAKVEVQGLTEETITLSIPSARLTELGLPPNQVLGVLNDENLVFN NGEITEGPARIGLSVPPGYVTPEGIEQLRLGAAGEVGQVAIRDIARVSRDEAEQPSQV IRHNGTAAFTLGVSALTNRNVVEVGSAVAARLETLKADLPDSVEITPIYEQHVVVDEA VSSFLLSLAMSVAIVVGALMITMGWRAGLVVGTTLGLTVFVTLFFMSVFGIAMERISL GALIIAMGMLVDNAIVITEGMVIGMARGKSAIKAAAETESSTSIPLLGATVIGIMAFS GIGLSPDSTGEFLFSLFAVITISLLMSWILAVTVTPYLGMLLLKAPKKNTSDDPYKGA FYAIYRGLLWLVLRARVLVVLVIVGITIVSVMAFGQVKQAFFPASNTPLFYVEFQMPQ GTDINVTDREMKRLEQLILSEDKVTDVTTLVGRGASRFMLTYNPEQADASYGQLIVRV ADAEAIPAMANRLNRDLPAEFPNALVRVEELVFGPPSGADVAVRFSGPDPVVLRQLAD DALRIYEAAGTITNPRTNWRQREILVEPIVDESRMRLAGATRSAIADTVRYGTSGLRV GELREGDEVIPIHLRLPATERDGVDRVRDLSAWSDGAGTYVPMANLVERFEPRLVEAL IHRRNRERTITALGGARADLTADEAFKSVRAEIEALPRPDGYSMEWGGQYESSTDAQT SLGKQLPLGFLVMLTISILMFNKVRQPLILWLVVPMSVTGMVLGLLFTGLPFTFTALL GFLSLSGMLMKNAIVLVEEIDVQRAEGVADYKAVIDGSVSRLRPVVLAAGTTIFGMIP LLPDAFFASMAVTIMGGLAFASVLTLVAVPVLYALLFRIRPPKEESTDSKTGTASG" gene complement(33234..34367) /locus_tag="RTM1035_00175" CDS complement(33234..34367) /locus_tag="RTM1035_00175" /note="COG0845 Membrane-fusion protein" /codon_start=1 /transl_table=11 /product="RND efflux system membrane fusion protein" /protein_id="jcventer:1101493006644_RTM1035_00175" /db_xref="CDD:31186" /translation="MKQSWKRIASVTVIAAAALLVLSVFPALRTDVRAQTTTDATKPA AETSEGAEHDRKVTVEVTRATSRTVTRGRTVAGRVAPARTVDIAFQVSGQVLRLEVDP GDKISEGDLIAELDPVDFELAVDRARAAFDLAKSELERAKSLAERGVAAEARFETARA EYAQAEVALREAERRLSQTQIIAPFDAIVARTFIEEYVNVTSAAPVARLQDVSEMRIM ISLPEELAAVARSAPDAFDLVASFPAVPGYTAPLMLRSFATDADRTAQTYDVEFAITG DVDSRLLPGMTARVRLSNAAAESSAQSAMVPVSAIDTSSRTEPSVWIYDEESGQVRRR TVRLGLPVDNEIVVLEGLQGDELVVSGGWWRLRDNQTVTVAGL" gene complement(34369..34911) /locus_tag="RTM1035_00180" CDS complement(34369..34911) /locus_tag="RTM1035_00180" /note="COG1309 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="jcventer:1101493006644_RTM1035_00180" /db_xref="CDD:31500" /translation="MTPAETRSASRRILSAARAIAARAGAGKITIDAVAKEAGLSKGG VLYNYPTKKALLSGLLDAMLAEHRELLDSVPERHPARTLRGHLETVLQSQEVDDDLSM AILATAASDPQLLDPLRGELSDDIGRILSDTQDPQGAMVVFWAIQGVRFQKLLKLPDG GADLRGRVIERLRTLIDELE" gene complement(35065..35709) /locus_tag="RTM1035_00185" CDS complement(35065..35709) /locus_tag="RTM1035_00185" /note="COG1309 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family protein" /protein_id="jcventer:1101493006644_RTM1035_00185" /db_xref="CDD:40531" /translation="MLRCAIVITFWKQVITMRESKGADVLRGAREVFLKCGFEGASVD AIAEQAKVSKATLYAHFSSKDRLFLSVLRAECDRLSEEICRPLSNLGNAQDALEELSR RMIGLVMDEGYIRLLRVCIGAVPVLPEAGEIYMDAGPTRAITHVAQILKDLHETKSLN VENVQNAASQFIHLSISDVIMPRLLAVDQPVDASEHSKRAVDAFLAVYGRRNDL" gene complement(35855..36178) /locus_tag="RTM1035_00190" CDS complement(35855..36178) /locus_tag="RTM1035_00190" /note="COG1733 Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, HxlR family protein" /protein_id="jcventer:1101493006644_RTM1035_00190" /db_xref="CDD:31919" /translation="MDAILRLLMGPWTTYIIWVLNDQGPQRFGVLKRSVPGISTRMLT ERLRMLQGAGVIWREQAETIPPAVTYGLTPRGNDLRSVLDALGTIAERWKAEGVFQDD DLGAV" gene 36334..37146 /locus_tag="RTM1035_00195" CDS 36334..37146 /locus_tag="RTM1035_00195" /note="COG3384 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B" /protein_id="jcventer:1101493006644_RTM1035_00195" /db_xref="CDD:33191" /translation="MARQPTLFIPHGGGPCFFMDWTPPDEWDRHRQFLENLPGTLPER PRALLVISGHWEEPAFTVQTSPTPPLLFDYGGFPPHTYELTWPAPGDPALADRVHDLI RAAGLAAAKDAARGFDHGVFVPLKVAFPEADIPCVQLSVASDLDPARHIALGQALAPL RDDGVLILGSGNTYHNMGVLMQSLRGGPRGPVVGGAFDAWLTEVMTCPDPEERNRRLV HWSDAPGGRDAHPREEHLIPLHIVVGAAGNDIGRKTLEDHVLGAVESAFRFG" gene 37175..38068 /locus_tag="RTM1035_00200" CDS 37175..38068 /locus_tag="RTM1035_00200" /note="COG0702 Predicted nucleoside-diphosphate-sugar epimerases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00200" /db_xref="CDD:31046" /translation="MSDSIQGPFIVTGASGQLGRQVVENLLAKGANPVVAITRTPDKL ADLRARGVEVRAGDFNDPATLGAAFAGGGRLLIISTDDLEPGKRLAAHRNAIAAAQEA GVTHIVYTSLTNPDESSPITFAADHRESEALIKQTGLPHTILRNCLYADLLLMSGAQA IGAGALYAAAGDGKAGYVTRADCARAAAAALLSEIGSTLRDITGPEAVGHAEIAAILS QVAGKEIPYVPITRDALVEAMVTNGLPEFMANVFSSFDVAIAKGNLDMASDDVEKLTG LRPQSVRDFLLANTPALTGQA" gene 38092..38580 /locus_tag="RTM1035_00205" CDS 38092..38580 /locus_tag="RTM1035_00205" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00205" /translation="MLNIPPREGPRPVTTPCAPHTQISQNPDAASYRAFKDRAFDFPF VIRQPSMISVPGAEALCLEHGRGCGCREAFMIGTEFAHVHPPQDGSLHMMLPEDAVPK IVDLGWAEPHPMAAAGMIPPTAVMVYAPRNEPEIDSVLGLLGLSYDFARGRLGRVDNI VL" gene 38714..39757 /locus_tag="RTM1035_00210" CDS 38714..39757 /locus_tag="RTM1035_00210" /note="COG0845 Membrane-fusion protein" /codon_start=1 /transl_table=11 /product="HlyD family secretion protein" /protein_id="jcventer:1101493006644_RTM1035_00210" /db_xref="CDD:31754" /translation="MAAIVIAVAVSGFLIWQSTLSDTDAEGFARGNGRIEAVEIDVAA KLPGRIDTVLVNEGGLVTAGAPLATLDTRQLQANRNQMVAELRRAEIAVENATLLVEQ RAAEVRAAEALLEQRRAEEDVARRQYERSESLTQNSITSERQFEIDRANAFGAAAAVA SAQASLAAARAGVASAKASVIGAEAAVTAAQATIEAIDVQIEDSTLKAPRAGRVQYIV ARAGEIVGAGGRVVNMLDLNDVYMTFFLSTADAGRIGLGTEVRLLLDAAPGIVIPASV SFVSDVAQFTPKTVETEVEREKLMFRVRARIAPELLQKHLDQVKTGLPGVAWVRLDPT APWPAEAQGKVLE" gene 39754..42495 /locus_tag="RTM1035_00215" CDS 39754..42495 /locus_tag="RTM1035_00215" /note="COG1131 ABC-type multidrug transport system, ATPase component" /codon_start=1 /transl_table=11 /product="export ABC transporter ATP-binding protein / export ABC transporter permease protein" /protein_id="jcventer:1101493006644_RTM1035_00215" /db_xref="CDD:31320" /translation="MTDSMPAVRAEGLSLRYGNTLAVDDVSIDLPSGRSVGVIGPDGV GKSSLLALIVGARRMQTGRLEVLGGDMARAGHRARIAPRIAYMPQGLGRNLYPTLSVR ENVDFFGRLFGEGAQERAQRIDELLKATGLAPFADRAAAKLSGGMKQKLGLCCALVHD PDLLVLDEPTTGVDPLSRREFWALIDRIRADRPHMSLLVSSAYMEEAARFDHLVAMDA GKVLATGSTAEILERTGAADLDAAFIALLPEENRSRHKDLSIPPRDPASDGENVIEAE NLTVRFGDFTAVDQVSFRIKRGEIFGFLGSNGCGKTTTMKALTGLLDPSDGTTKIYGR KVDAHDMATRKRIGYMTQSFSLYSELTVRQNLDLHGQLFDMTSAEIVPRIAELAERFD LEDVLDSLPMRLPLGIRQRLSLAVALIHRPEILILDEPTSGVDPVARDIFWQSLIDLS RNDGVTIFISTHYMAEATRCDRISLMHQGRVLVSDTPEAIREEVGAETLDDAFVHHLQ RAQDQDTPPAPEMKEELSAGPATSARRRRGGFSLARLLSFSWRESLELRRDPIRLTLA SLGSVILMIVLGYGVSMDVENLKFAALDFDRSILSQSYVNDLAGSRYFDEEPPLVDHA DLDYRMRAGEISLALEIPPGFAADLERGRPVAIGAWFDGAMPMRADTVRGYIQGMHAH WLTEQMRQVFGDQAVAGNFTLEVRYRYNPDVESLAAMVPAMIPLLLMLIPATLAVLSV AREKETGSIVNLYVTPARRLEFLLGKQVPYVVLGFMNYLLLLALAVVVFGVPVKGSLL ALSLGALIYVVLATGLGLLISAFTQSQVTALFFTFMATLIPAMQYGGIIDPVASMDGM GRVIGEIYPTSHFVTISRGTFSKALGFDDLGGSFLPMLALVPVVVLLGAIFVRKQEK" gene 42499..43611 /locus_tag="RTM1035_00220" CDS 42499..43611 /locus_tag="RTM1035_00220" /note="COG0842 ABC-type multidrug transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter, family 2" /protein_id="jcventer:1101493006644_RTM1035_00220" /db_xref="CDD:31184" /translation="MRLRHVLQLSLKEIRGLLRDPLLMVLVAYAFTLDVYVSATAIPE SLNSATIGIVDEDASPLSRRVADAFLPPYFMPPAQIDIAQMDARMDAGIDTFSLVIPP EFQRDLLAGNRPELQLNVDATRVSQAFTGAGSISAIVNQEIAGWLARDAAPVGMPVDL AVRARFNPSLDPAWFGAVTSVISTVTMLSIILSGAALIRERDHGTLEHLLVMPVTAAE IMTSKVLSMGSVVLVATALSLTLVVQAGMGIPIGGSVALYLVGAALHLFATTSMGILL ATIAGSMPQFAMLLLLVLLPLDILSGGVTPRESMPQAVQYIMLAAPNTHFIALAQGVL FRGAGLSVVWPQLVALMLIGSVMFAFALHRFRAFLR" gene 44208..45443 /locus_tag="RTM1035_00225" CDS 44208..45443 /locus_tag="RTM1035_00225" /note="COG3464 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="jcventer:1101493006644_RTM1035_00225" /db_xref="CDD:33267" /translation="MGLGVSDDTVLRQLKKCVQGTAEASTVIGIDDWSWRKSQTYGTI IVDLERRVVIDILEDRDVATCANWLKRHPEVEVISRDRCGLYAQAARLGAPQAKQVAD RFHIVQNLRQAIEEQMNLHGRATGRALLSDADNITAAGSLLKSRLAHRTSREEVFATI HALRNQGLSCSEIGRRTGFPRRSIAKWLQFETPPDRRRAALKRTSPWYFEEFLGQSWK DGIRTGSALFRLIRERGYEGSQTHLQRLLAGWRRAEQQASGPKVKHKILKPVRDPETG HAISPVIAAALCIKPRGKLTSDQARKVDALKAGSPDFATMRRLAMRFNGILRGREADP LPAWIDEAIETDLAPLVRFARTLNRDFDAVKNAIEMPWSNGQAEGQINRLKTLKRAMY GRAGPELLRARMLPFRHTD" gene complement(45463..46134) /locus_tag="RTM1035_00230" CDS complement(45463..46134) /locus_tag="RTM1035_00230" /codon_start=1 /transl_table=11 /product="BNR repeat, putative" /protein_id="jcventer:1101493006644_RTM1035_00230" /translation="MTDRAAPVGIGAREPSLATLPDGRIILSWTEEKGAEAKVRMAIL DGSEWSDARTIHKSSKIYINWADFPSVMALSNGTLAVQWLELNGTSDYQYDVNIAFSL DEGKSWSVPLIPHDDRSQRQHGFVSLVPHQFGGLTALWLDGRKYESQTEGDSFENAMQ LRSRQINSDGTMKPESLLDARACTCCQTSAARTGSGDMVAVYRHRTADEIRDISIVRS TGGVA" gene complement(46324..46782) /locus_tag="RTM1035_00235" CDS complement(46324..46782) /locus_tag="RTM1035_00235" /note="COG2010 Cytochrome c, mono- and diheme variants" /codon_start=1 /transl_table=11 /product="cytochrome c family protein" /protein_id="jcventer:1101493006644_RTM1035_00235" /translation="MKEFDGMKWAAIFFALIAVASAGWYIMQPDYSQTGTQTDEGVAL PAGALVTVTLPASFTEQEQIGAGAYDAVCAVCHGLNGQGRDGVAPPLVHKIYEPSHHS DMAFVLAAQNGVRAHHWKFGNMPAVEGVTRSEILAIVTYIRALQRANGIN" gene complement(46779..48083) /locus_tag="RTM1035_00240" CDS complement(46779..48083) /locus_tag="RTM1035_00240" /note="COG0559 Branched-chain amino acid ABC-type transport system, permease components" /codon_start=1 /transl_table=11 /product="ABC transporter, permease protein" /protein_id="jcventer:1101493006644_RTM1035_00240" /db_xref="CDD:31327" /translation="MSLLDRYHVFVHNVSAAFGYDYNDATPDWVHPFIHLILVLAPAL LISVGLYLAIRGVLKLWKDRSMPAFHAEPIRGLEGSLFSTVLRYSRRQQALMIMVSLI AMPILYLTLELPKQIVNNALDSDRFPIAVLGRDLDQVVFLMLLCGLYLLAIILNGLNK YGLNVFKGYVAERFLRRFRLLVYRQWRSDADSRNQSEIIPILAQEVEPIGGFAADVLA LPILQGGTLLTILSFMFVQDPVLGAAALTVLPIQLVLLPKLQRRVNALSRTRIREVRQ LGRQLSDQLRERQVNPAGLLPVSTSFRELERVRRKIFRLKFFIKALNNFLTALTPFLF YSLGGYFVIEGRITLGALVAVLAAHKDFSAPLKELFNYYQTLEDTRIRYQEIMAFLSK SIQPLGHAQPDNTVPQEAGQFERSKQRYPALSLVGQGAIATS" gene complement(48092..48625) /locus_tag="RTM1035_00245" CDS complement(48092..48625) /locus_tag="RTM1035_00245" /note="COG4454 Uncharacterized copper-binding protein" /codon_start=1 /transl_table=11 /product="copper tolerance protein" /protein_id="jcventer:1101493006644_RTM1035_00245" /db_xref="CDD:34133" /translation="MTNFLRTCTIALALVLPAFSVGASSGKGQQPHARAFEVPGHDPI GKPGDGSSIDTTIELSIRETESGYMLFEPDALHIESGSVIRFLISNLGGLDHEFFLGS FNEVAEHQQWMREHPDMQHDNANSVSIPSGQNAELIWEFSDMTNLEFVCLIPGHREAG MWGVIIVHDHLAPKSKG" gene complement(48730..49443) /locus_tag="RTM1035_00250" CDS complement(48730..49443) /locus_tag="RTM1035_00250" /note="COG4454 Uncharacterized copper-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00250" /db_xref="CDD:34133" /translation="MQKILLSTAITLTLATGAYASPGHTSKAETAAPQMDIGVPGDAA KVDRTIDVTLLENDEGQMLIESEPMNIKEGETIRFNITNKGELEHEFVLDTVERNAEH KIEMAKMDMEHDDPNRIRLDAGASGEVVWTFANSGTFEAACLIPGHYESGMHREVAVG DQMAQADVEYTSGTIKKIDAKAGKVTIIHGPLVNLDMPAMTMVFRADEAMMAKMAEGQ GIEFVADRVKGKLTVTQMK" gene complement(49490..50764) /locus_tag="RTM1035_00255" CDS complement(49490..50764) /locus_tag="RTM1035_00255" /note="COG2132 Putative multicopper oxidases" /codon_start=1 /transl_table=11 /product="putative copper-containing oxidoreductase protein" /protein_id="jcventer:1101493006644_RTM1035_00255" /db_xref="CDD:32315" /translation="MGLPEAAQMDSAATAITARPNSGPDYTPVVTLNGWTLPHRMNNG VKEFHLVAEPVERELADGMIAHLWGYNGQSTGPTIEAVEGDRVRIYVTNKLPEGTTVH WHGLILPSGMDGVSGLSHPSIPPGKTFVYEFDLVKSGTFMYHPHGDEMTQMAMGMMGM FVVHPKDPTFMPVDRDFLIMLNAFDIDPGTYVPRIMTMTDFNLWTWNSRIFPDIDPLV VNKGDLVRVRVGNLTMTNHPIHMHGYDFKVTCTDGGWVPPEAQWPEVSIDIPVGAMRA YEFVADHLGDWAIHCHKSHHTMNAMGHDVPTFIGVNKKPLTQKIRQFQPEYMPMGMSG MGDMAKMEMPLPDNTIPMMTGWGPYGPIEMGGMFSVVKVRDGIDADDYSDPGWYENPP GEMAYEWTGELPDFASNNSPKTILTPKPTSKG" gene complement(50860..52323) /locus_tag="RTM1035_00260" CDS complement(50860..52323) /locus_tag="RTM1035_00260" /note="COG5283 Phage-related tail protein" /codon_start=1 /transl_table=11 /product="hypothetical conserved membrane protein" /protein_id="jcventer:1101493006644_RTM1035_00260" /db_xref="CDD:31727" /translation="MRVSKFPLVFGFPLILGACATAVPGIYTEPKAGFANISSQVTPA IGKRTAFAETQAENEALKKQVHAMVHRKTISADTAVQVALLNNKGLQASYANVGLSAA EAWQQSTPENPIVAIGILGIGAPELGAYRAIEGLIRSNVLDATTRKQRTAIADANFRK AQLSAVNDTLALANQTRKAWVDAVAAFEAVSYLRRAKATSDAGSELAMRLGETGALNT AGQAREQAFNAELAGQLAQARLNATRSKEQLTRLMGLWGTEVDYYVPDALPALPRSVG RVTDIEAKALRNRVDLRVAKLGLEAQAKAFGLTDQTRIISDLEFIAGFEAEREIEDGE TETVTTPQVEVEFAIPIYDTGKARMRKAELSYLQAANVLAERAVNVRSEARGAEASYH AAYKIARHYRDVLVPLRTTVEEEGLLSYNGMITNTFELLTDVREKLGASLEAANAKRE FYMAQADLTAAIYGGGEGGGGAGGEGATLAAGGGAGH" gene complement(52323..52598) /locus_tag="RTM1035_00265" CDS complement(52323..52598) /locus_tag="RTM1035_00265" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00265" /translation="MSLAQILRETMFINQVTFMKIHLLMGASALGLGACAYEPTPLPS VATQQAVINTAVSSPISYQDPLAGYTYRGPTGPRDWRSVNQEQTEGN" gene complement(52618..53040) /locus_tag="RTM1035_00270" CDS complement(52618..53040) /locus_tag="RTM1035_00270" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00270" /translation="MSFRVVISSWIKAFTCIAFALALVFSPPSAAHAASGMHDGHQAK SVSIVGAAETHDTGSDAHHAHTKLKVTSDIDIAASDKDGKEKQSQECCNGICISVVFI EDTKIRAEPVGTSEYVILDGQTYSVETAGFLRPPRFLI" gene complement(53220..53378) /locus_tag="RTM1035_00275" CDS complement(53220..53378) /locus_tag="RTM1035_00275" /note="COG2608 Copper chaperone" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00275" /translation="MQKPIMAADPDAKVSCDLTAPIVGVDSTLDETALAAAISGAGYG AEKLAEVR" gene 53738..54355 /locus_tag="RTM1035_00280" CDS 53738..54355 /locus_tag="RTM1035_00280" /note="COG0477 Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00280" /translation="MPGIQFVSIVLAFSLAALLPVLCLYILLSPGFAAALAAGGPSLA RFLRQVTTNGLPVVFAVNYVSFFLFAVIQKPKVARRDTAFFVLVDILLRAILFPSLHA LIYVLSADWFESFGGSRATALSVVAPTLARSAFFENISGVYLYATMISALPLYVSAFG QSEFLGPTVRRLPIKAGLMLLALFAFALSVGLIAIGAQGIAYLQG" gene complement(54367..55710) /locus_tag="RTM1035_00285" CDS complement(54367..55710) /locus_tag="RTM1035_00285" /note="COG0531 Amino acid transporters" /codon_start=1 /transl_table=11 /product="amino acid permease" /protein_id="jcventer:1101493006644_RTM1035_00285" /db_xref="CDD:30877" /translation="MQKHNKNHDGNDGYREGSISLGGAVAMGTGVMIGAGIFALTGQI AQLAGPLFPLAFIAGAIVTSFSAYSYIKMSNAWPSAGGIAMILQKCYGSGAVAAGAAL LMALSMVIAESLVARTFATYVLRPFDITGGPLVPVLAVAVIVFAFLVNIAGNRSVGLF SLIMAAIKIGGIALFGIAALWSSGFQFAAASETAETFGVTGFIASVALAILAFKGFTT ITNSGGEITDPHRNVGRTIMLSIAICVVVYLLVAFGVGASLTIDEIIAARDYSLAQAA EPALGQVGFYLTVVLAAVATASGVLASVFAVSRMLTMLTEMKMIPHSHFGMSGAVQRH MLVYTVVIASTLAVLFDLGRIASLGAFFYLVMDMIIHWGVFRYRRTEVGASSIVLLSA LSLDAIVLAAFTVMKLQSDPMIVLYAAVGMIAVFAFERVYLSRWLAPQAAHSHGE" gene complement(55819..56475) /locus_tag="RTM1035_00290" CDS complement(55819..56475) /locus_tag="RTM1035_00290" /note="COG2717 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00290" /db_xref="CDD:32610" /translation="MLTGYLLLASRAEWSEMHRYNRALGDLSLLLIVAAMAIGPLARL SSAPFLRKLMPYRRELGIYAVLAATVHTIIILIGWVELDFARLFGFEFHPQLQRYVML QHGFALANVVGIAALLYGFVLAGTSNNFSQRVLGTSVWKYIQQGAYVLWWLAVLHTAY FLFFHFLDFHRQMPEPNWARWPFVALVASVIALQGAAVVVTWRSQTSRRIYGAPSQRE " gene complement(56609..57262) /locus_tag="RTM1035_00295" CDS complement(56609..57262) /locus_tag="RTM1035_00295" /note="COG2020 Putative protein-S-isoprenylcysteine methyltransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00295" /db_xref="CDD:32203" /translation="MTDAGASYGLWLLVFINSGVFIIFAFSFFKPQTKRDWRSFGAFS AFVVALFTEMYGFPLTIFFLSGWLQSTWPEVDWFAHDSGHLPEMMFGWQSNPHFGPFH LLSFVFIGGGFWLISVAWHHLWNAQRQGLLATTGPYARIRHPQYVGFVLIMLGFLVQW PTLLTLAMFPVLVWMYARLARGEEKDSRERFGAGWDRYASRVPAFIPNVNTLQNVER" gene 57301..57453 /locus_tag="RTM1035_00300" CDS 57301..57453 /locus_tag="RTM1035_00300" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00300" /translation="MTAVHEEVHSDAKQQWQPDQQSAAQDVHPVVVTQEKDANCQRND QIDAGA" gene complement(57547..59901) /locus_tag="RTM1035_00305" CDS complement(57547..59901) /locus_tag="RTM1035_00305" /note="COG2217 Cation transport ATPase" /codon_start=1 /transl_table=11 /product="copper-translocating P-type ATPase" /protein_id="jcventer:1101493006644_RTM1035_00305" /db_xref="CDD:32399" /translation="MNDQVSHAAHETESNIYVCPMHPEVRQNGPGDCPKCGMHLVPEA ELDNHAGHDHHGHDHHAGAAPADGRYDTVPEGYDGAVYTCPMHPQVRQVEHGSCPICG MGLELESGVPMDDGPNPELVDFTRRFWVGTVLTIPLLILTMGPYLGFPGVREIFGERA TLWIELVFGTPVVLWCGWPFLVRGWNSFRTMNLNMFSLIGMGVIAAWLFSVVAVLAPG IFPDGFRDAEGHVGVYFEAAAVIVTLVLLGQVMELRAREGTGKAIRALLDMAAKTARV IRDDGSEEEIPLEDVQVGDRLRVRPGDKVPVDGVVLDGRSSVDESMISGEPVPVEKTE GDPLTGATINGTGSLVMEATRVGSDTMLAQIVEMVSNAQRSRAPIQKYADKVAGYFVP AVIGIAVLSFIAWAVWGPSPALSYALISAVAVLIIACPCALGLATPMSIMTATGRGAQ AGVLIKNAEALERFEKVDTLIVDKTGTLTMGKPQLVAVLPQPGHDEAEVLRLAASLER GSEHPLAEAIVRGAEERDVKMADADDFEAVTGKGVKGVVGGKVVALGNLAMIRDLGLE AGDLTAKANARRDEGETVMFVVLDGEIAGLVAVADPVKETTPAAIKDLHALGFRVIMA TGDNERTAKAIGARLGIDEIRADVLPEDKARIIKELQQQGRKVAMAGDGVNDAPALAQ ADVGIAMGTGADVAIESAGITLVKGNLDGIVRARRLARATMRNIRQNLFFALIYNASG VPVAAGVLFPFFGILISPMFAAFAMSASSISVVLNSLRLRGAKI" gene complement(59898..60845) /locus_tag="RTM1035_00310" CDS complement(59898..60845) /locus_tag="RTM1035_00310" /EC_number="2.7.6.1" /note="COG0462 Phosphoribosylpyrophosphate synthetase" /codon_start=1 /transl_table=11 /product="phosphoribosylpyrophosphate synthetase" /protein_id="jcventer:1101493006644_RTM1035_00310" /db_xref="CDD:30810" /translation="MILVAFPEMRPLAEDLAPALGADLLALDWHHFPDGESLISLPGD LDGADVAFLATLRDPDRLALPLRFAAATAREMGARRVGLIAPYLGYMRQDRRFERGQA VSAPLFAQFLGESFDWLASVDPHLHRIARLQDVFPMPAIRAVSAPLLATWISTNLPDA VLLGPDSESQQWVAEVARLAGRPYEVLRKVRSGDRSVDVSVPESAALHEGTPVILDDI ASSGVTMARAVERLLAAGTAAPVCLAIHAVFAHGAQDAILSAGAARIITTDTIPHPTN AIGIAGLLAEAILSVVTALDLPVAGTIRLDPNPAERTTE" gene complement(60842..62350) /locus_tag="RTM1035_00315" CDS complement(60842..62350) /locus_tag="RTM1035_00315" /EC_number="2.4.2.4" /note="COG0213 Thymidine phosphorylase" /codon_start=1 /transl_table=11 /product="thymidine phosphorylase" /protein_id="jcventer:1101493006644_RTM1035_00315" /db_xref="CDD:30562" /translation="MTETLALVSSRIDTYRQPVVYMHEDCHVCRSEGFAAQTRIRIDL KDRWIIATLNVVRRGAWLAVDQAALSVSAWAALGAEIGDEAAFSHPEPPASASMIRAK AYGERLDRAGFATIVRDTLDSRLSDLDLAAFVTACAGDRLNEAETVALTRAMKEAGQT LDWGQHTVLDKHCVGGLPGNRTTPIVVAIVAAAGHLIPKTSSRAITSPAGTADTMEVM APVALDAAALRRVVEAEGGCLVWGGGLALSPADDHFIRVERPLDFDSTGQLVASVLSK KAAAGATHVLIDMPVGPTAKVRSAGAAEALGIRLSSVGKALGLNLALHISDGVAPVGR GMGPALEAHDVLAVLRRAPDAPGDLRARALDLAGHLLDLAPHAVAGRGRDRAQALLDS GAAEAKFMAICAAQGGFRKPGTAAQQIEIRAPHAGQLTAIDNRRIARIAKLAGAPRQK SAGIRLLVRIGDWVDKGQPLYELHAETPGELAYALAYAESQTGVLTLSEAVS" gene complement(62347..63729) /locus_tag="RTM1035_00320" CDS complement(62347..63729) /locus_tag="RTM1035_00320" /note="COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase family protein" /protein_id="jcventer:1101493006644_RTM1035_00320" /db_xref="CDD:31429" /translation="MIPTARPKLRFLGAAGTVTGSRYLVEALGRRILVDCGLFQGFKQ LRARNRKPFPVRVNTIDTVLLTHAHLDHSGYLPTLIRAGFRGRVLCTEATADLCGLIL PDSGHIQEEEARFAARRGYSKHKKPKPLYTLKDAKAALDRFDLQPFDRRIDLGDGIAA RFIPAGHLLGAAQIRLEVGGRVVHFSGDLGHDPDPLMRPPQPFGGADVLVCESTYGNR SHPDVDPEAELAPILKRTFARGGTVLIPSFAVGRAQGLMLHIARLMERGDIPYVPVFL NSPMAVNATEIYHRHHAEHHVSREDCIAMFEIAKRVNTVEQSKELNTRQGPMIIVSAS GMLTGGRILHHLASFGGDRRNAILLSGFQAGGTRGAALAGGARTLRMFGREFPIEAEV VQLQSFSGHADADEILRWMSAGPAPEMTYLTHGEPVTADTLRFRVEHELGRSVRVPEH LESVYLDRPR" gene complement(63726..64091) /locus_tag="RTM1035_00325" CDS complement(63726..64091) /locus_tag="RTM1035_00325" /note="COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00325" /translation="MMPIFYFTAVAVILFLALRMTCGACVMGGPAGAGRVRLPVVPLG WALSLFLALTYLVCIAFDLIFPAYAMYETWSGLLPGFVWLTPVGFIIGLVESFLYGWY AALIFGGLYNAIAARGTAT" gene complement(64558..65025) /locus_tag="RTM1035_00330" CDS complement(64558..65025) /locus_tag="RTM1035_00330" /note="COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes" /codon_start=1 /transl_table=11 /product="cardiolipin synthetase" /protein_id="jcventer:1101493006644_RTM1035_00330" /db_xref="CDD:31691" /translation="MAQTCVYLTSPYFGPGTVVDRALQDAARRRVDVRLLVPRTSDPM VAGWATRAAYAQLLSAGVRVYEYLPRPLHAKTSVVDTGWSIIGSANLDYRSLFVNQEL VLVAHDRVLAGQLQAQYLQDLSDAREVPLRAWHSRSWRARGFEVIGWAARRLL" gene complement(65184..65879) /locus_tag="RTM1035_00335" CDS complement(65184..65879) /locus_tag="RTM1035_00335" /note="COG0517 FOG: CBS domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00335" /db_xref="CDD:33251" /translation="MLAKDIMTTSVISVPLEGQIEDAVRLMLDHNISALPVVDAEGDL KGLVSEGDLMRRVRETDGPRRSWWLEVLGGASESAQDFVKLKSHRVEDVMTRDVVSVE EDTNVAEIARLLEKHRIKRVPVVRSDKVVGIVSRANLLHALSALQDGALPEPSEDDRV LRAKIEEALKEVPGAAVNLINYTVDKGNVAVWGVADSDFEENAIRVAVENVPGVRMVE VHMGRLPAWAYGI" gene complement(65919..66521) /locus_tag="RTM1035_00340" CDS complement(65919..66521) /locus_tag="RTM1035_00340" /note="COG0723 Rieske Fe-S protein" /codon_start=1 /transl_table=11 /product="ubiquinol-cytochrome c reductase, iron-sulfur subunit" /protein_id="jcventer:1101493006644_RTM1035_00340" /db_xref="CDD:48646" /translation="MMRQTIDETNQLPATERRDFLYYATASTGAIAAGAAVWPLINSM NPSADVTASGTVKVDLSGVEPGQRITVKWQGHPVFVWRRSEAAIQAARAVDLDQLPDP VDEAGENPNTSGEEPALDENRAAGEDGEWLVVIGVCTHLGCIPLGQDGSAVGEFGGWF CPCHGSHYDTSGRIRKGPAPRNLDIPPYDLGDDLQLVIGT" gene complement(66518..67360) /locus_tag="RTM1035_00345" CDS complement(66518..67360) /locus_tag="RTM1035_00345" /EC_number="1.3.1.10" /note="COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH)" /codon_start=1 /transl_table=11 /product="enoyl-(acyl carrier protein) reductase" /protein_id="jcventer:1101493006644_RTM1035_00345" /db_xref="CDD:30968" /translation="MPEFDACCDPAELLDLSGRKGLVVGIANDRSLAWPAALHFRQAG AELAITYVDERTKPHVVPLAARLEAPILLPCDVNAPHELDAVFDAITDRWGKLDFILH AVGSVPPGDLHGRLTDCSAAGFSQAMHVSVHSLIRMAHLAEPLMKSGGSLITLSYLGG ERVVENYNVMGPVKAALEATVRYLAHELGPSNIRVNAISAGPVMTRAASGLTGFAGLL DATARVAPLRRNVTADEVGRAALLFASDYTGGITGEVLHVDAGVHVESPVAAAKMNVK SEES" gene complement(67353..67532) /locus_tag="RTM1035_00350" CDS complement(67353..67532) /locus_tag="RTM1035_00350" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00350" /translation="MEWLFENWVLVLVFGGMAAMHLFGHGHGGHKHGKSAKRHGAHDK KSEASADTEAVSEDA" gene complement(67516..69222) /locus_tag="RTM1035_00355" CDS complement(67516..69222) /locus_tag="RTM1035_00355" /note="COG3243 Poly(3-hydroxyalkanoate) synthetase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00355" /db_xref="CDD:33055" /translation="MPYVQDAFERWVLLLDTLRERADNMIAHERQGMPPLLDFDYELL LDARTFERSANYALLRITRVGDDCWDDCVDEAKPPVIVIDPRAGHGPGIGGFKRDSEV GMAMHEGHPVYFVIFYPEPMPGQTLSDVHYALRDFVLEVARRHPDTAPVLYGNCQAGW AATLLAADCDGLTGPIVLNGSPLSYWSGEAASSPMRMMGALSGGAWAAHMISDLGDGR FDGAWLAQNFETLQPEKAIWDKYATLFAHADTERERFVEFERWWNGYYTLSREEILGI TQNLFIGNRLEQGEMQLDAHCTVDLKRISNPLIIFASDGDNITPPEQAMGWIGKLYPD TDALKAAGQRIVYMTHPRVGHLGIFVSGSVARLQHRAILESLDDVEALSPGLYEMVID NPSGDPDCETGDFEVRFEPREVDDLGIASDDAALKQVAQISRINEAVYSIFVSPWIRA ATTPASAEALRALHPMRWTRTMFSEQVNPWMALIKSTAETLRETRSPLPDDHPAIVAE RALSARTGEGIGAWRKGRDAWITHVFGAMFGNFPFAAATTQAEKPSASSKKGMNNYGM AF" gene complement(69299..69634) /locus_tag="RTM1035_00360" CDS complement(69299..69634) /locus_tag="RTM1035_00360" /note="COG0018 Arginyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00360" /translation="MPRKTMDRKSGGTRHSSSDDDDLRILFSQMTCACAETCGHADAP MARALFNRVEMMNQPPSLAARALGIEPGDASYLLTGLREDVAKDFVRVMLAGRPSIDT TNQEEADDE" gene complement(69727..70353) /locus_tag="RTM1035_00365" CDS complement(69727..70353) /locus_tag="RTM1035_00365" /note="COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma-70 factor, ECF subfamily protein" /protein_id="jcventer:1101493006644_RTM1035_00365" /db_xref="CDD:31783" /translation="MASQDSGKPDVPDASPERALLDGRGAFMGFLVKRLGNRADAEDV LQDFCIRVLSRKDQLREVERMDAWLYTILRSTLNDHYRKGTRRSRLAAAAAREPEEWI ADAPSQMARLCTCHGGLISELRPADAELIRRIDFGEEDRESVAADLRLNRNALGVRLH RARTALREALTTHCGKCCQEDRDDCYCPPEGCENDKHETDCEEEGQEH" gene complement(70574..71464) /locus_tag="RTM1035_00370" CDS complement(70574..71464) /locus_tag="RTM1035_00370" /note="COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="Putative transporter, DMT superfamily protein" /protein_id="jcventer:1101493006644_RTM1035_00370" /db_xref="CDD:40969" /translation="MSPTVITKIVLAMFLWAACFPLITAGLQYAPHLTFATMRAGLAG AALVGLAMILRRPFPRGWRTWLTLGIVGIGATSLGFLGMFHAAEFVSPGLATVIANAQ PLLAAILGVVWLGERLPKVGWVGLSIGFMGILVIALPQLLDGGQEGSAIGFAYIVLAA VGVTISNVAIKSIAGKVDGLFAMGLQLLIGSAPLAFAALALEDQNAIQWNAVFTASLL GLALFGSALVYWLWFSVLEAVELNRAIVFSFLVPIFGLSIGALFFGERLSGIQFSGIA LVILGIVFVNLKGARRSQGR" gene 71720..72388 /locus_tag="RTM1035_00375" CDS 71720..72388 /locus_tag="RTM1035_00375" /note="COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma-70 factor, ECF subfamily protein" /protein_id="jcventer:1101493006644_RTM1035_00375" /db_xref="CDD:31783" /translation="MNHDPNDRLSTADQPNTAAKDADIAVRRSLVEGRQHILNFLRRR LGDPEAAEDVLQTFMLRAIDRSEQLRDVRAVRGWLGQILASSIADYGRKVSRRRQREV VMAPTDLDSVQNGFDEELDEAICNCLYKLLPTLRPEYAEVIWRVDLQEQPRDAVAKDL GITLNNITVRLHRGRQALKTRLEQMCLTCPVHGFLDCDCDAAEKARARFQAMKDDAGA KTTD" gene 72721..73971 /locus_tag="RTM1035_00380" CDS 72721..73971 /locus_tag="RTM1035_00380" /note="COG2230 Cyclopropane fatty acid synthase and related methyltransferases" /codon_start=1 /transl_table=11 /product="Cyclopropane-fatty-acyl-phospholipid synthase" /protein_id="jcventer:1101493006644_RTM1035_00380" /db_xref="CDD:32411" /translation="MWLLAKSLRRLVQNGRLTIYDPCGQTWHFGPGGEPAVSVRLTEK VLPVQLLVNPSIALGEAYMDGTLRIETGSLRDLLSICMTDIDTIDALPGRRLTRWLDA FLSRRLHHNPISRSHANVAHHYDISTELYDLFLDADRQYSCAYFPIGTETLDEAQAFK KKHIAAKLLMRPGLEVLDIGSGWGGLAMELAQQHEARVTGLSLSTEQIAAARERAQQT GLFDQVAFERRDYREEHGLYDRVVSVGMFEHVGRSGFDAFFTTLQRVLRPDGVALLHA IGRMAPKGGSDPWIRKYVFPGGYLPTLSETIAAAERAGMWVTDVEVLRLHYAETLRHW SERFAQERETARMLYDERFCRMWEFYLAVCEMAFRNGRLMVFQIQLAKRRDAVPLTRD YIAKVKAGESAWDISTGTEFTRAG" gene 74013..75011 /locus_tag="RTM1035_00385" CDS 74013..75011 /locus_tag="RTM1035_00385" /EC_number="1.2.1.59" /note="COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="jcventer:1101493006644_RTM1035_00385" /db_xref="CDD:30406" /translation="MIGKRVADAVVAQEDMDLVGVADVTSDWRARMARAKGFALYAAD PDRTPAMREAGLDVAGGLDDLLATADIVVDSTPKKVAVRNVETYRERGIRFIVHGGEK HEVTGHSFVAEANYASAIGRDRTRVVSCNTTSIVRTLTALKVAGLLGSARGTLLRRAT DPWESHLGGIMNTLVPEPDIPSHQGPDAQSVDPDLDVITMAVKVPQTLAHLHYWSVRM PRKASKDEVLEAFRASSRIALIRMADGLGALNAVKEMMADFGRPNDSLYEVALWEDML KVEGDELYYAYMVDNQAIVIPETIDAIRALTEAERDGSASIARTNAALGVGTFTAT" gene complement(75057..75827) /locus_tag="RTM1035_00390" CDS complement(75057..75827) /locus_tag="RTM1035_00390" /note="COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00390" /db_xref="CDD:40206" /translation="MKRLAEKVTLITGGAAGIGLETARLFLSEGAKVALVDLHVDDLS DAAGDLGNPDDLLTIAADVSSVEDCKRYVAQTVEKFGRIDVFFNNAGVEGMVAPLVDQ KIEDFDRVMAVNVRGAFLGLQHVLPVMTGQQSGSVINMSSIAGLKGSPNVAPYITSKH AVVGLTRAAAIEVAGHNVRVNSVHPSPVNTRMMRSLEEGFNPGHGDEVKQQLAGTIPL GRYGESIEIANLVLFLASDESAFITGAQYPIDGGMSAG" gene complement(75846..76757) /locus_tag="RTM1035_00395" CDS complement(75846..76757) /locus_tag="RTM1035_00395" /EC_number="2.7.2.2" /note="COG0549 Carbamate kinase" /codon_start=1 /transl_table=11 /product="carbamate kinase" /protein_id="jcventer:1101493006644_RTM1035_00395" /db_xref="CDD:30895" /translation="MLVVAALGGNALLRRGEPLTAKAQRENVATAATALAQIIKAGHR LVVTHGNGPQIGLLALQGAAYKPDAVFPLDVLGAETDGMIGYMIEQALENALGHDRPV ATLLTQIEVDPKDPAFAKPTKFIGPVYDKAEAERLAQARGWSIAADGAHWRRVVPSPM PSGIPDLKVLELLLEQDVTLICAGGGGIPVVRRADGSLIGVEAVIDKDHATALLAHKL NADALLLLTDVEAVFRDFGTETQSAIWQVSPEDAVRLDLPDGSMAPKVAAAATFVSDR ARFASVGRLEDALALLDGKAGTMIVNN" gene complement(76760..77761) /locus_tag="RTM1035_00400" CDS complement(76760..77761) /locus_tag="RTM1035_00400" /note="COG0078 Ornithine carbamoyltransferase" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase" /protein_id="jcventer:1101493006644_RTM1035_00400" /db_xref="CDD:30427" /translation="MSYNLRNRHFLALRDFTPQEISFLLKLSADLKAAKYAGTEVPRL TGKEIALIFEKDSTRTRVGFEVAAHDQGAHVTYLGPSGSHLGKKETVKDTARVLGRVY DAIEYRGFGHPIVETLAQYAGVPVYNGLTDEFHPTQILADFLTMQEHSDKPLREIAYC FMGDAGNNMGDSLLIGGAKMGMDVRLCAPESLWPGQAIRDEADDVAVQTGARITITED VDAAVKDVDFVYTDVWVSMGEPKEKWAERIELLTPYQVNSDVMAKTGNPRAKFMHCLP AFHNAETEVGADIEEEFGITAMEVTEEVFESPASIVFDQAENRLHTIKAVLVATLGN" gene complement(77785..79014) /locus_tag="RTM1035_00405" CDS complement(77785..79014) /locus_tag="RTM1035_00405" /EC_number="3.5.3.6" /note="COG2235 Arginine deiminase" /codon_start=1 /transl_table=11 /product="arginine deiminase" /protein_id="jcventer:1101493006644_RTM1035_00405" /db_xref="CDD:32416" /translation="MSEPKLGVHSEAGTLRQVIVSPPGLAHRRLTPDNRENLLFDDVF WVKQAIKDHAVFADVMRGEGVEVLDAMALLGETLDISDARAWVLDHRITRNDVGVGMR DDLRAWMEGLPGTELARLLVGGIRVDDLPFTPSGMFGSYLGPHGFVLPPLPNFIFTRD NSAWVYGGVSLNPMHFAARRPETLLMAAVYRFYPTFADRVRVWFGDPTREFGTATLEG GDIMPIGHGVVMVGMGERSTPQAVGQLAEALFEGGDVTRVIACQMPSSRAAMHLDTVF THCGGDVVTTFKEVADAITCYDLRPGQGKAALDIRRDARHIFEITAEILGHKKLHLVP TGGADAAEQSREQWNDGNNVLALRPGVVIGYDRNDDTNAALKEAGIEVLAIPGAELGR GRGGSHCMSCPTIRDAI" gene complement(79038..80444) /locus_tag="RTM1035_00410" CDS complement(79038..80444) /locus_tag="RTM1035_00410" /note="COG1288 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00410" /db_xref="CDD:31479" /translation="MAARFPTAYSILFGLIIVVAALTWIIPAGQYDRAMNEEVGREIA VPGTYQTVEPNPQGVIDVMLAPVAGFYDPDSYAANAIDVALFVLLLGGFLGVVNATNA IDTGIQTAMVRLKGREIWMIPILMSLFALGGTTYGMAEETLAFYALLIPVVIAAGYDS VTGVAIILIGAGIGTLGSTINPFATVIASNAAGIPFTDGIALRLVLLLGGLAICVAYV MRYASKVKADPARSVVAAQRDSDRQFFLNETDATFEEPKLSGTQKLVLILFFTTFAVM IWGVSSQGWWMARMGALFFGMAIVVGLVARMGEKKLTSSFVDGAKDLLGVALVIGLAR GIVVIMEQGLIADTILNSAADTLGGLPEVAFINLMLWIEIGMSFLVPSSSGLAVLSMP ILAPLGDFAGVGRDLVVTAYQSASGLVNLITPTSAVVIGGLAIGRVSFDRWVVFVWPL LLILVVFISAGISLAAIL" gene complement(80503..82869) /locus_tag="RTM1035_00415" CDS complement(80503..82869) /locus_tag="RTM1035_00415" /note="COG2217 Cation transport ATPase" /codon_start=1 /transl_table=11 /product="Copper-translocating P-type ATPase" /protein_id="jcventer:1101493006644_RTM1035_00415" /db_xref="CDD:32399" /translation="MKKLTLEVRGLFEELDHLAVERHLSALGGVHSAEANPASASVTV HYDETAVGEEELRNTVEACGFHCAGERVPNHVCHADHQMSGAEAPAGHDAMAHEMGHG GGMDMASMVRDMRNRFWVALLFTIPIFTYSPMGGLFTPPAPPFGLELDLWLFFLGSAA IIWPSWPFFVAAWRALRNGILNMAVLVVLSVGTGYVFSVGSTFFFPGVQFYEAVAVLL VFILLGHWLEMRARAGASAAIRALLDLAPPMATVIRDGQDVEVPTSEVLEGEIVLIRP GNKIPVDGEVVEGASLVDESMLTGESMPVNKAVGDTVIGATINKSGSFRYRATKVGAD TALAQIVKLVQEAQNSKAPAQLLADKASQWLVLIAVVIGLATFAVWFWWIGSPLLFAL TLTITVFVIACPDALGLATPMAVMVGTGLGAQHGILFKNAGALEDATKLDVIVFDKTG TLTMGEPRVVEVVAAEGGAEDDALRAAAAVDRGSDHPLALAIVERAADLDVPQMAEFL NLEGRGARAEVAGKTVLVGNRRLMDEEGIDVGTLTAEAERLKGEGRTVVHVAQGGRML GLIAIADAPRPSAKATVAKLRARGVEVAMLTGDNEGTARRIAGELGIDIVLADVLPGQ KAEKVKELQAQGKKVGMVGDGVNDAPALTQADVGFAIGAGTDVAMESADVVLMKSDPY DVVGAIELSRATLRKMHQNLFWAVAYNVVAFPMAAGVFYPLIISPAVAALAMSGSSAL VAVNALLLKRTRLEGIGAGKSGSASGGGQGDAQAGQVPLHAGHSQKSH" gene 83228..83737 /locus_tag="RTM1035_00420" CDS 83228..83737 /locus_tag="RTM1035_00420" /note="COG2252 Permeases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00420" /translation="MCLSAQVSFAASVFLVGGGTAISIVAWRRNKRYLPLALMPLFAG LQQFTEGFVWVGMNGNDPLTVLWGAMGFIFFTWFMWPIWVPYSVYVLEPDDSPRKRLF RLMALIGLAFGLLLYIPHGLNSSMVVVEINNQSLAYEKSMWLDYMMPRWLTNTIYVGS DAGGGRIVR" gene complement(83747..86617) /locus_tag="RTM1035_00425" CDS complement(83747..86617) /locus_tag="RTM1035_00425" /note="COG4644 Transposase and inactivated derivatives, TnpA family" /codon_start=1 /transl_table=11 /product="Transposase Tn3" /protein_id="jcventer:1101493006644_RTM1035_00425" /db_xref="CDD:41571" /translation="MTDRQRAVLFDLPTDQAALLRHYTLADDDLEIIRGRRRSHNRFG FALQLCALRYPGRLLAPGEVIPEAVTRFLAAQLGLRPDDLADYAAREETRREHLAALR EVYGYKMFTGRGSRDLKAWLEDAAETARSNEDLARSLVEQCRATQTILPGITVIERLC ADALVAAERRVDARIAGRLDKEMGNRLDALLTEDAGGSVTRFVWLRQFEVGQNSADMN RLLDRLEFLRALAPGGSILADVPPHRVTRLRRQGERYFAGDLRDISGERRLAILAVCA LEWRSAIADAVVETHDRIVGKTWREAKSRCDARADDAKAALKETLQAFSTLGSALLEA HEDRASLEEAVQNAGGWSSLKGLVATAAQLTDTLAADPLAHVVHGYHRFRRYAPRMLR LLDIQAAPVAVPLLEAAGIIARTETTVTLPLTFLRRGSKWQRHLNADEGDGQRLWEVA VLFHLREAFRSGDIWLVRSRRFGDLKEALVPAEVARATPRLAMPFEPETWLADRKVRM SDALRRLARAAKAGAIPGGSIENGVLKIDRLTAAVPEEAEAVVLDLYGRLPGIRITDL LLEVDDDIGFTEAFTHMRTGVPCTDRIGLLNVLLAEGLNLGLSKMAGATNTHDYFQLS RLSRWHVESEAMARALAMVIEGQSSLPMARFWGAGQTASSDGQFFPTTRQGEAMNLIN AKYGHEPGLKAYTHVSDQFGPFATQTIPATVNEAPYILDGLLMTDAGQKIREQYADTG GFTDHVFAVTALLGFQFIPRIRDLPSKRLYLFDPASCPKELNGLIGGKIKERLITTNW PDILRSAATMLTGVMPPSQLLRKFAAYPRQHELAVALREIGRVERTLFIIDWLLDADM QRRAQIGLNKGEAHHALKNALRIGRQGEIRDRTTEGQHFRMAGLNLLAAIIIYWNTKH LGHTVTQRQHDGLDCPAELLAHISPLGWAHILLTGEYRWPKR" gene 86796..87383 /locus_tag="RTM1035_00430" CDS 86796..87383 /locus_tag="RTM1035_00430" /note="COG1961 Site-specific recombinases, DNA invertase Pin homologs" /codon_start=1 /transl_table=11 /product="DNA invertase" /protein_id="jcventer:1101493006644_RTM1035_00430" /db_xref="CDD:32144" /translation="MTMTKIGYARCSTDKQDLTAQRQALHALGVSEDLIYTDHGLTGT NRTRPGLDQALAAVREGDVLIVSKLDRLARSVPDARAIAEQLEKKGVKLALGASVYDP TDPMGRMFFNILATFAEFESDLIRMRTREGMAIARAKGKLRGKQPKLSEKQQKELMRM HASGDYSISDLAELFSVSRPTIYRTLQRAGPKISP" gene 87483..88247 /locus_tag="RTM1035_00435" CDS 87483..88247 /locus_tag="RTM1035_00435" /note="COG0477 Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="major facilitator superfamily MFS_1" /protein_id="jcventer:1101493006644_RTM1035_00435" /translation="MLPSPRPSEPRGVYDRTTRGIRIYLATPRLRGLLALNLAAAAAG AMVLVNTVVLVRGSLGLSESALAWTMFAFGAGSMIAALVLPRVLDVLPDRPVMFGGAT LMVATLVGLALTVLGAGLGWSILLTAWLLVGLGYSAVLTPSGRLLRRSAHAGDRPALF AAQFALSHACWLVTYPLSGWLLTVYGVVPALIGLALIAAFGMLAALKLWPSGDPVELE HTHDNLPLDHPHLRGHRRHSHALIIDESHPRWATHL" gene complement(88421..89470) /locus_tag="RTM1035_00440" CDS complement(88421..89470) /locus_tag="RTM1035_00440" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00440" /translation="MQYDIFYDPLVNAEGLEETSEDDLWFLPGPMDEEPDYLPPGPRA ELRETAVLDDWRKAEAGNAARLARVAGRIGALDDRLRRGPKGWRHRLALMEAADLSWF VGDRIGPDRLALWKSMRLSGVQDDTAALARVGWAVRRLTGGLGPEVDLSAFLDRRDPE NLGVEAEPFAERAGGWLDLMAQAADLHPVTRACMGFHLWSLAGLGQHGDRMEAAVTAA RIVASEGKGALFAPLAMGGAGGLRSGGPPADRLSRWLDGMETACLTAMRHLDDIEAWS ARAEAEMSPLSGRTPPALCAVLTEWPLVSAPMAEALIGASRAAIQRNLAWMEARGLIH EMTGQGRYRMWRVAT" gene 89715..90599 /locus_tag="RTM1035_00445" CDS 89715..90599 /locus_tag="RTM1035_00445" /note="COG1961 Site-specific recombinases, DNA invertase Pin homologs" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor protein" /protein_id="jcventer:1101493006644_RTM1035_00445" /db_xref="CDD:40337" /translation="MPLIGYARVSTEDQTPLPQSQALKSAGCAEIHEEQASGGNRARP VLGRVLERIGKGDTLVVVRIDRLARSLSHLLEVIERLEAKGAFFKSLQDPIDTASPQG KFTLQVLGAAAEFERALIRERTKAGLASARTKGRVGGNPGLRARDPAALRKVRLARQD GYMERLNETAQDWVPQVRRLRPDLAWEDVVRIINGPLPEARRWTQSRLLRAVKAYVRD GFLPTEVLARAGRRETDDRLPAIIAGIKGADPDITLQAICERLESMRERTPRGRTRWQ PSSVRMLLERAERIGLLE" gene 90715..91878 /locus_tag="RTM1035_00450" CDS 90715..91878 /locus_tag="RTM1035_00450" /note="COG1373 Predicted ATPase (AAA+ superfamily)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00450" /db_xref="CDD:31564" /translation="MYMRQTHQLVQSALANQAAVVLLGPRQVGKTTLALDIASEQPSV YLDLERDADRQILTEPDLYLDEQTGKLVILDEVQQMPGLFKSLRGQIDQRRRAGFRTG QFLLLGSASNVLLQQSAESLAGRVRYIEMPPLQLTEVGTDQLNALWLRGGFPDSFLAA SDQASMDWRLDFLRTYLERDIPALGPRIPAATLRRFWTMLAHVQGGLLNAAALAEGLG VSGQTIGRYLDLLVDLMLVRRLQPWHENVGKRLVKSPKIYVRDSGIVHALLSIGTTEG LLGHPVVGGSWEGFCIETLLAATPAGTEPFFYRTSAGAELDLVLRLPGGDIWAVEIKR TTAPKVSRGFHTGAEDVKANRKLLIYAGERDVPLAEDIRAIPLEQGIGLLRAL" gene complement(92133..92321) /locus_tag="RTM1035_00455" CDS complement(92133..92321) /locus_tag="RTM1035_00455" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00455" /translation="MPPHSASLPYGERPATRCAKAVLFDLATGSMLISRSEIKMQIEP KPLTGSLSAPVKLMQPEG" gene 92724..94022 /locus_tag="RTM1035_00460" CDS 92724..94022 /locus_tag="RTM1035_00460" /note="COG1192 ATPases involved in chromosome partitioning" /codon_start=1 /transl_table=11 /product="replication protein a" /protein_id="jcventer:1101493006644_RTM1035_00460" /db_xref="CDD:31385" /translation="MVAVNKELTLRQRIKRTWSMRQCARFLNVSIQYLTKFANSSDDF PAGEYVGRERVFTLSELMHMRALLAASAKRPYDYLAWRKPDAPLPVISFASQKGGTAK SLSAAHFAQYLSLHYGMRVGVMDADPQSTITLYFVGGEGLPQMPDENTASMVDFAGLF QSEDAPYTDHDAQTLDSFFLKTSWPGLRLLPAHGETSEGEIQIARLVREAPAGKSFYR YLRDAIDRWKAGHPPKTLPNELVVDGKVDQERLDTALTETLDVIIIDYQPALTLFQLN NVIASTSLVIPQTMKGFDIATLSTFVTGLLGMLQHILAHERIEIGTGANMLLPTIVQR SNAQDLNHIGNLLEHCPTEILPVFYLRSDAISNASDVYQSVYEYEPDTPGKRKGINRF ITNADAVNDAIISRLWPGLERGYANTWMDEFYEDDGEGEA" gene 94019..95047 /locus_tag="RTM1035_00465" CDS 94019..95047 /locus_tag="RTM1035_00465" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00465" /db_xref="CDD:47776" /translation="MKRSIPRSLVSKATNLDTNKERASGSEGSTESSDAVSTPFKGAG SAWKSGALAQSQAAVERSRAELCLDILNGRHELSLSPDQISDPMGTDRRQDWMSQEAF RSLVNSIASNGQDTPILVWPEDPDWQPDPLDPSNIAGVPFVMLTGRRRLAAASELGVP LRAILAPPDARNAENSKFEMLFLRFRENEERENLSPFERLVSIGEMYETLASGEEKLT AVAFAKKIGVHESLVSRARSVFAAQDQILNTFKNVYDMSFRDLQGALASLERTNKAKP KPKTKTKPQKLTVKRKVGNRNLSVTSVDGNLSIKVAGVPIDQERLEKLGDLVANYLNV EDTEKDTD" gene 95275..96555 /locus_tag="RTM1035_00470" CDS 95275..96555 /locus_tag="RTM1035_00470" /codon_start=1 /transl_table=11 /product="replication intiator protein" /protein_id="jcventer:1101493006644_RTM1035_00470" /translation="MKHTGWRKPTPCLGVAEQLAQAGEQVAVPKTRAFVALKRVGAHI GLKAGDMMLLDTLGAFTQAQDWEEGQRPIVWASNAYLMEQTGFSLSALKRHARRLAEI GVISFQDSPNGKRWGRRDADGRIIEAYGFDLSPLSARVEEFEELHAELQAERELCQRL KRQITVARRMIRARIEAAISSALRGPWSQFTGLFEELLDRLPRRHEASEQLARLLTWF KDLQERVEAAYLKATEVVQTVENTPETKEQVSGKTQEMNPREVISEPHILITNQLNPV TSNSSEKEEAAGVVPNAEPEERVDRELEDWVAEVRKKRTALDLPTIMQACPEFASWAR NMGGFLKDWGDLHRVAGQLRPMIGISEHAWNVAQDRMGTQVATAAFALVFEKHSTGEV ASPGGYLRGMVEKAGAGELHLERSFYGRLNGQAA" gene 96914..97399 /locus_tag="RTM1035_00475" CDS 96914..97399 /locus_tag="RTM1035_00475" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00475" /translation="MKGILMQTGVLRVLRATAASWWRHKELRRSGQTGQAQRRERETV LCDLSYLKQAALLPNAHVICGEGGTFIHLGWTTVSTFAPIERFPLATLAVARGTPFID IRPVTDVIAFANLPRVAQDESVDPEPWGPGRSASLTTYIDMVEALGGRIANDPRPRQS T" gene 97440..98378 /locus_tag="RTM1035_00480" CDS 97440..98378 /locus_tag="RTM1035_00480" /note="COG4227 Antirestriction protein" /codon_start=1 /transl_table=11 /product="peptidase M, neutral zinc metallopeptidases, zinc-binding site" /protein_id="jcventer:1101493006644_RTM1035_00480" /db_xref="CDD:33952" /translation="MARSRTPKFDASEVITNEIIRIIERGVLPWRKPWTAGGSCRPLR VGGEPYQGVNNFLLTMRTVMAGHSSPFWMTLPQANALDAKVRKGEKSSVVVYYGQSRR DAGDEHDHSDGDDHSEEARIFRFQKSYRVFNACQIEGLPDSFYPDPEPAPEHPPSEPI AHMQAFFDAIDITTVFTGTEAYYLPPVDKVYMPSITRFQDPRNFYGVWAHELAHATKA PHRLNRDFGFSKFGNTSYAREEIVAELTSVFLGQTLGFTAHTLEMNAAYLHNWLRVLR SDKGAIFKHAADAQRACDYLIARSEAGRAGRSAKAA" gene 98402..98611 /locus_tag="RTM1035_00485" CDS 98402..98611 /locus_tag="RTM1035_00485" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00485" /translation="MSCKEPKTLRVACFKDGRRKIITFKRGAYWWSSSEGAYPLSAAL ETIKENGGWVETIPNPNYRPKGLFG" gene 98699..99088 /locus_tag="RTM1035_00490" CDS 98699..99088 /locus_tag="RTM1035_00490" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00490" /translation="MAMTVQPQPDRPDSTVIAAQNDAFRKLACLGVPPAQPIQGRMHV TRALMEAGDGFMAEAVKATGEFATFEPENDPEGWHDFGAVEIRGETVFWKIDLYEADS DFRYGAETPDNPATTMRVLTIMLARDW" gene 99245..101227 /locus_tag="RTM1035_00495" CDS 99245..101227 /locus_tag="RTM1035_00495" /note="COG1475 Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="parB-like partition proteins" /protein_id="jcventer:1101493006644_RTM1035_00495" /db_xref="CDD:31664" /translation="MTTSFAPLTVAIGDLVPHPANVRSNAPETYDPENIAHLKASIAV LGLLQPLLVQKLDGKYAVLAGGRRHAALKELVADKASKGFMAKTKVDCRLVPDDCDVT TALSLAENITQAPMNAIDEFEAFARMMEVDGQTPETIAKTFGTTVAAVKGRLRYGLIH PDIRAAARGKVITLDTMKAFAEHPSQEAQREVFEALTKDGGYLQAYTVRQALKSRGVQ VSDDIGAFVRADYEARGGAVAADLLEEHSVLEDAALVETILLEKLGAAAEEARTRLGF AWADAMVRYDYATMADYGRVYPGPIEPDEAAQKRVDEITAELEKLQLEMEDEGLEDGA YNALYDRVDALEEEARDLQEAYSAEDLARSGVIASWQGGQITLHVGLVRPEDTVKEEG ARGSSASPTGEEAPDPGEITYPASLAEDLKTERAMALGAAMALHPEATLDLTLFKLVS DVLASGMSVTQAIKIDARKEYRNHAKMDEIDETSLEQVAAAHDALDLSWLDDTRPPAD QFAAFRALEAGEKAKLVAFATASTTQSCFARDRQRDSLMHALEIEIMPDIRAHWTPNA ALFNRFKKAWLLRILGEDLGLAQEAVTLASSSKKEIVAFCDKLFAEPFATLTDAQRAA VAAWCPPMMQTAGVACDEAEPAAEAPEPDSEVAQAA" gene 101300..101893 /locus_tag="RTM1035_00500" CDS 101300..101893 /locus_tag="RTM1035_00500" /codon_start=1 /transl_table=11 /product="predicted regulator" /protein_id="jcventer:1101493006644_RTM1035_00500" /translation="MAILKFSASAVAAQIAHARDCKTFLPNWNGPVDRPALILIVGNG VHLRSNGIDGTTTRIVTTEQADPSFAFADGMNPFRDTDWMAQRRMAFRDLTGQFYTDI LDDVQVLIDRGRGAIRLATDGHSIRVFVRRASDYLIGGTYEVPSGLGGTFRVILKDAC DTFAIVQNCGNCEDFDAMQPYRVPLDALMEIDGRRAA" gene 101996..102649 /locus_tag="RTM1035_00505" CDS 101996..102649 /locus_tag="RTM1035_00505" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00505" /translation="MGWLFYTDRRVQTYADEKAEIARLCTFESDTRKTELIKSCKVGS TWYAAARVTSIDGTPVEDTTYVTDADGSITFAAVFLTRYDDGCWGYKDMEESAGPVES RAPLSLLALLSELKDPDSYAHAWRQRCQDWAAIPDYEEGDKIKLAAPVTLTDGSTCQI VTATHYRRGRQKRRCYRIEETGGLVRLSKASLAGSELLSSAKGAASPVLAEFLAGRN" gene 102774..103100 /locus_tag="RTM1035_00510" CDS 102774..103100 /locus_tag="RTM1035_00510" /note="COG2002 Regulators of stationary/sporulation gene expression" /codon_start=1 /transl_table=11 /product="htrA suppressor protein sohA, putative" /protein_id="jcventer:1101493006644_RTM1035_00510" /db_xref="CDD:32185" /translation="MTALAQDVSKLTDRYQTTVPAGVRKQLKLGKGDQIRYCTEPSGR VYIEPVRSDEEDPVLGAFLDFVEADIKAHPDRIRAFDGALHDRLAALVGDVDVDLDAP LSLEDE" gene 103097..103615 /locus_tag="RTM1035_00515" CDS 103097..103615 /locus_tag="RTM1035_00515" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00515" /translation="MSGDSVPAQAPLVVNGWSIYAHPLFLDQLEGLIEEVEARKARDP KTWRKKNPTKRLAAIFKLVTEAIPADPGAAAFRQGGTLGDHRKHWFRAKFFQQYRLFY RFNSDAKVIVVAWVNDDKTLRAYGSKTDAYATFKGMLEDGNPPDNFDALLKEAAAAGK RFETSLEAVPDR" gene 103710..103874 /locus_tag="RTM1035_00520" CDS 103710..103874 /locus_tag="RTM1035_00520" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00520" /translation="MIEAENDRQHLGLEEQCAPDLTGHRFPIAVHVADMPDDLGKLLD IGLEEHFRGG" gene 103864..104016 /locus_tag="RTM1035_00525" CDS 103864..104016 /locus_tag="RTM1035_00525" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00525" /translation="MAADVNSYDAWFCAQVQAALEDARSGTSQVQVMQAAQALIDAKR EVEPKS" gene 104118..108380 /locus_tag="RTM1035_00530" CDS 104118..108380 /locus_tag="RTM1035_00530" /note="COG0286 Type I restriction-modification system methyltransferase subunit" /codon_start=1 /transl_table=11 /product="putative methylase/helicase" /protein_id="jcventer:1101493006644_RTM1035_00530" /translation="MSKPRTANPALAISEADLASALAQIGTEVDDQPLRSSALARIMR ETFHGSDAGGAWDWRIAYDMMQAAAVQVVLRGNGVADDIAAAKLLASRLLTETRRSEQ QIRLQQFSTPLPFAALVLRAAAIRKGDTVLEPSAGTGALAAFAARAGATLVLNEIDPF RQSLLRAAFGGDVTGHDGEHIDDLLQAPVLPDVVVMNPPFASSVDRSRDKHIAAKHLI AAAKRLAPGGRLVAIMPPGFTPERDAAHWSRACGLLTPRLALTMPGQVYRKLGTSVET QLMVFDKVQEGGEMIRATLCDLDEALPFVDAVAATRTEMSPAQRVEAIPHARPTVRSF VPRKTAAGVITAPTARANAVRPLSFTSLQTPRNNMPISDIYARYRPQRIEIADAQEHP TPLVESIAMASVAPPMPSNTGRDDLRLPARLIEEGHLSEAQLETIIMAHDAHRRDLPG RFAIDDDQTKLTRADDDPNARAYRLGYFLGDGTGCGKGRECAGLILVNWLAGRRKAIW VSKSATLIEDAIRDWTDLGGSPADIQPLSKWKPDQPVPMGDGILFVTYATLRSAGKCG TTRLSQILDWMGAEFEGVLAFDEAHAMQNAAGSEQGRGVKPSQQGLAGLRLQLAAPRA RVFYISATGATSVHNLAYAARLGLWGQGPEYPFPSRESFVSAMEAGGVAAMEVVARDL KTLGLYTARALSFDGVEYDVLEHALTPAQIKIYDAYAGAFRTIHHNLEAALTATGVND ASGETNASAARASAKSRFESTKQRFFNHLLMGMKAPTIIRAIEHDLAAGHACVIQVVS TGESLLKRRLETMDSDDELVEGALTPRDYVLGYLEQAFPIHAQKLVEIDGSMVAEPLR DETGALVVSREALALRDAAMMELMTLAPIPAALDQILWAFSDEAVAEVTGRSIRPLKA EDGHLFIEKRAASSNSSETQAFMDGEKDVLIFSDAGGTGRSYHAAQTAKNQKRRRHYL LEPGWRADAAIQGLGRTHRSAQVSAPFFRVCTSDVHGEKRFTSTIAKRLDQLGALTKG QRETGSQGMFREEDNLESPIARAALRGYFADLAAGRAEAMSYESFTDWTALRLIDMDG VLLEELPPIQRFLNRVLALPIHMQNALFAEFMRRIADQTERARAAGTLDLGVETLRGE KIEQVSTEDLWTCPKSGAVTRIIGLEVTDPVHVLGAKEAMSRNPDKLPMVNRASGRAA LISARPMQMYDEDIVTLMRKAVRPNGSSYLEEARFESSAWEEIDRPEFAQIWDAEAAS LPKTTTTKLYLLTGLLLPIWKDIPTTNERIYRVTPDGATAMIGRTLSEEGAASLRARF LVSNPQTPQEMLTAALGTTAPVDLGRGLTLTRRRVAGEMRLELGGADRGMIDGLKALG CFTEIIAFQLRVFLPHGDGIDTGSILARIVGQRVAKVAEQAA" gene 108501..108887 /locus_tag="RTM1035_00535" CDS 108501..108887 /locus_tag="RTM1035_00535" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00535" /translation="MTNPQIDYAAMAAQWRAERETTLKASRTELLAQLRALGISEVTA EYEGYGDSGNVEDVTVQPAEVQLPEALATEVGDFAWSLAYHHHPGFENNEGGYGTLTW DLRNDSITLDHADRYVECSHSYDEGL" gene 108889..109350 /locus_tag="RTM1035_00540" CDS 108889..109350 /locus_tag="RTM1035_00540" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00540" /translation="MAHPLHHAESSARKFGGVPSDYQAVHDWFDASKEHLALFTHRAL RHHAQGLFEAERVFGLTLTNSAGRDIPVRWIGEQHVREDCQGRIPSMADWQRRIQPEP WMANGHIDRHSGDEPCGDPRVAWASEVAAGRTVLGLKDWKAARATRATQSA" gene 109451..109753 /locus_tag="RTM1035_00545" CDS 109451..109753 /locus_tag="RTM1035_00545" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00545" /translation="MTLNDIKAAVDAGQTVHWANTGYIVHKDRLGQYLITYQPNGSCI GLTDRSGHRLNGKEVEFFIGRSKDSAENPGSQSRPDGQGRGVAPGGAGAFPLGRQL" gene 109878..110606 /locus_tag="RTM1035_00550" CDS 109878..110606 /locus_tag="RTM1035_00550" /note="COG5489 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="ParB-like nuclease" /protein_id="jcventer:1101493006644_RTM1035_00550" /db_xref="CDD:45185" /translation="MFAGTLTRNVETAAAEYTGMIHSTRFDIAIQLEARAKMSERSPD FDVTAINKSGRKVRVGTAWNETGNTSGNPYISMQIDVGLGPFRVNAVQTKEARSAQSG EFEIIPLVSNGLMKSGSISGELTAMDADNAFTGYIANMMFDLEFMLIENSYKSEETHP DYRIEVSSPRGTPIRVGSAWMAKSSRTGNDYLSLLINTPDGDLRVNAVQNEEQRGGQT FSIIPFIDSGEQPQDAGAGLSLVA" gene complement(110980..112359) /locus_tag="RTM1035_00555" CDS complement(110980..112359) /locus_tag="RTM1035_00555" /note="COG3673 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00555" /db_xref="CDD:33471" /translation="MGGSRPDQRLSNVYKMYRAMRPGPDSPINPKDQVAFYDPGLGTG ESGGLFGRVKPILESAVGTGIDHNIIDCYEQIIAHYEPGDRVLLFGFSRGAYTVRALA NVMNLCGIPTEMPDGKPVPRHGPGLRKIAKDAVKFVYNHGAGKPRGQNPYFKHREELG RRFRQKYSSAPQEGDENQGNVQPTFIGVFDTVASLRTAVVRTLVWGITFATGAAFVAG LVLGWSLLLVIPLGALLGALIWQLGSLLLDNFKYFADDPDRKLKIWRLTDWPQILKTG HFAAWNKRNYDMWLDPDVNHARHAMAIDEDRADFPRVGWASKKAAIETKDREPAWLKQ VWFPGCHSDIGGSYPEAESRLSDIALDWMIDELKECVPSIKINENYLNRAPDPLGLQH REDAIVRLGPISIPWKKGIREVGDDFPLHPSVQERMQATAVAQFGEVKPYRPQQLSKR RDLKRFYET" gene complement(112432..113013) /locus_tag="RTM1035_00560" CDS complement(112432..113013) /locus_tag="RTM1035_00560" /note="COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00560" /translation="MKTMPPDYDIAFEDQVRECFGRVVYTHKTHERMADRSADTLRRY KMAQIALSALTSAGAVGVVVGDETWVEIVTVVISFLTLFVAAYLKNFDPGAIAQKHRD AAAKLWNVRECYLSLLTDLPRLSHEVAVERRDELQAMLAALYEGAPQTDGKAYKEAQR RLKEMEDMTVTDDEIDCFLPLSLKRSGGRPKQK" gene complement(112994..114319) /locus_tag="RTM1035_00565" CDS complement(112994..114319) /locus_tag="RTM1035_00565" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00565" /db_xref="CDD:31932" /translation="MGISDDFKTFLDNIKIDNAATIALRYGEVTASLNKEFRDTESKT ANSLQVGSYGRWTAIKGISDLDMIYIMPAGKWDTYKEEGQNRLLHDARDAIKRRYPST TVKVDRLVVRVLYNDFHIEVMPAFKLADGSYKYPDNAKGGSWKITKPQAELDEMREAN ERKNRNLRHLCKMARAWKNKQGVAMGGLLIDTLAYNFLESTDEYDTKSFHYYDYMCRD FFKFLADQPKQSEYAALGSRQRVRVKKRFERKAKKAYDLCVKAIDASGQKNERQKWRD VFGNAYPAPVRSAAGEAAAFAHVFKNTEQFVEERFPVDIRYHLRINCEVTQDGFRPGM LRDLLERHGVLLPKKSLRFFIADATDLPDDAEVFWKVLNRGEEAERRDMIRGQIVRDE GRGERRETTNFRGDHLVECYAVSRGVVVARDTVRVPIRVRDAEDEDYAA" gene 114803..115132 /locus_tag="RTM1035_00570" CDS 114803..115132 /locus_tag="RTM1035_00570" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00570" /translation="MDAFSRLAEDWELSTDEQITLLGSPGRSTFFKWKKSGGNLPHDT IERISHLLGIYKSLQIVLPNPEAADGWIKKPNAFFDDRSALDVMLGGNVVDIYKVREY LDAQRGG" gene 115113..115859 /locus_tag="RTM1035_00575" CDS 115113..115859 /locus_tag="RTM1035_00575" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00575" /translation="MHNAVDDFDVKQINGVFYVLIPSRFPPVPLYQRIAGGRDDQVAA VADLHNPRVMEKQRLLGQGCVTADDVSPRFQNWNHAPFAYSNPEGSWFFDRFVRCLEM SQDKQTALAVSVAKRALFLSRTAEAPIGLDMRMLSRKVSGAFLDLRALPVELCQSERR KLGKLLWERAKTEGLSGVLFRSFERPSGTRICVLDGNVLDRAIQGEHFRYSWDGEKVS SLYAFDNSGGDEDNSIDPRDLGQDEDILAA" gene 116598..117527 /locus_tag="RTM1035_00580" CDS 116598..117527 /locus_tag="RTM1035_00580" /note="COG0840 Methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00580" /translation="MAYDTANTYETIELFGLTEKDAQLPIPEDHILTDHIIRESFEAL LGQLRGTGLEAEIEPLAHGLATILQRRKVALGKEVDRTADKIGALAKSHDGSEIAETA LEEAQARFVQLREIVGAIEVMSEAAAECYEVETGHAFIPAAGSRASVRAQETGAVFEA RQLLEQHDRETAEKSKVEGVPLIVSGATDWTDVDVIFNTLDKVRERIKQNRNEEIFLC HKGGKHGAEMIAARWARARGVAQARFDPRWSAHGRAAPFKCNDEMLDDKFAATGVVLF GGNGVALNLGQKAEAKGLTVMRVADPVKKTAET" gene 117628..118677 /locus_tag="RTM1035_00585" CDS 117628..118677 /locus_tag="RTM1035_00585" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00585" /translation="MRAKQNLEMIGMTPLSSIAMSAYTDLVRLLKDDALSGVEGKPTL KERGDKAYWYAARRVGTEMRFIYIGEDSDDTRARIDRIEELRATAKDRQAERSRLVRL LRAEGMTPTDRATGSILSAMAAAGTFRLGGTIVGTNAFRLYEGELGIRLPIGGMANTG DIDIAQFEKLSVALQDQVDPGLAETFSALKFDPLPALDQGRTWRWAQGGSGQLVEFLT PAFGDETIRDLPALGVNAQGLNYLNFLIAEPIHAAAIYRSGILVQVPRPERYAIHKLI VADRRRDGAGSLKSAKDREQAAFLIEAMAEDRPDDLARAYAAALEVGPRWREHIGTSL KRMPETKLILGGLGV" gene 119319..119525 /locus_tag="RTM1035_00590" CDS 119319..119525 /locus_tag="RTM1035_00590" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00590" /translation="MTNHYVATVPVKFTDTDGQERTRFQRVGAMFRNTRNGDGSEFFS LKLDFPVAVSELVMFPPSAKDPQD" gene 120079..120636 /locus_tag="RTM1035_00595" CDS 120079..120636 /locus_tag="RTM1035_00595" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00595" /translation="MEIVREAAEGVSTSVLAERFGVSVRAIQYTLKADAERQTDAAIP VSAVSVKVTAAELAALDAVLEKAGIESRAEGLRRLIQAAGGVFVPDAQMAAEMARYRA SLHEVGNGVTQIAKQMTQANRRGQGAVGGTSAEFTELRLAQMRGLARFILDSADEIDL LLRRRRDAMQLEATAALREFAHAAE" gene 120623..122956 /locus_tag="RTM1035_00600" CDS 120623..122956 /locus_tag="RTM1035_00600" /note="COG3843 Type IV secretory pathway, VirD2 components (relaxase)" /codon_start=1 /transl_table=11 /product="Relaxase/mobilization nuclease domain" /protein_id="jcventer:1101493006644_RTM1035_00600" /db_xref="CDD:43358" /translation="MRLNDAVHAVTGEVFRDGWSRVRGSMQGLHVAKQTQLVRAAAGH RPAVFKAIRGGGTHTKSQLANQLDYLTTKSTHIVDSSGFLDGKAKLEAGDIKDLTERF AKRWDAGFKPKLGQTTHMLMSFPVGTRGVDVRDIATDVAERFFQSDEGHFDYIIAVHE DRDHPHAHLVLNRRSQEGEFFFLGRNHRFNYDDFRLAMVEEAEKYGVRLEATRRVDRG VVHYPARTSEVYDAKEEGRAPRERERVGQDLTRTLAEIANTRTVYHSLAAEASREARE DIAAALFRAGEVLARSGQVDRTGDVYMAEDQSFEDLRSLYAEKLARVQGMIAEKSDAE RPVLEKRLIEIQTQVQHMQPLGLRSSTLSETPSEGGIYSEANIDASQRERLAEPDLRS RIDAALRGTGISTSEVVARIETGASNAALEHQWIANDLSKVAEARDLNLERRADLEQA RDILNDVHVELGTLLERENVLRRDGVMEAEPISERFHYHRDAVRAMEGTIRQEMRADG LTAQQIEDRDWEVVSRAERRIETEQRAYLVAHPELLALPGDVIDRSEPYRETITDVAR ASEITREVDRIMEARDLRTPVADAVTDDLRARYPDMPSHLARGLGATYAAVVEIRDTE AINQVRRETEMRDGLGSGTRDALLAARGETAPQSDNTDRLADEIARVLDHERAGELSA PFETEADREAFREEIARLLDDRQLDRLTSGDADALEKVLEDRLDRLYVAKVYLQSDAA TANTEALRQVVDDLADTEYEKHRATDVDGETERGQVH" gene 122965..124965 /locus_tag="RTM1035_00605" CDS 122965..124965 /locus_tag="RTM1035_00605" /note="COG3505 Type IV secretory pathway, VirD4 components" /codon_start=1 /transl_table=11 /product="TRAG protein" /protein_id="jcventer:1101493006644_RTM1035_00605" /db_xref="CDD:33308" /translation="MGKARIATGVLLVTLVTAAMGYTIASAVLTYQDLGFGAEIDFAY IAQNYLAILDRRPEDAQLIHLIIGSFAAAGLMLSLALSGSALTRFGQTHWQTAREMKA NGFFGAPGTGFILGKLGTPGSRANYICSKVFPHALIVAPTGRGKTTGFVIPNLLTWQG SAVTLDVKGECFEATARHRAAQGDKVYRFAPTDWEGKRTHRYNPLLRIFELKDPARQQ MELQLLATLFLQSDNDRVQGLLKGGIDLFVAAGLLAFQRKRPTLGEIYRIAASGGNKQ KEYFARGHEVDNRAAKLIFTRLASTNNDTLTSYVSLLMTSGLDQWQNPAIDEATAVSD FDFRTIRKKPFSVYLVVQPLMVKPLAPLIRLFFSDLLSAMQEKDPGPDEPWPVMIMLD EFNRLGKMPIVVESIETLRTYRGHLAVVTQTIPALDEIYGENTRRALQGNAGVKLYLT PSDEKTVEELSKAVGKTTKTVITRSQSIGKNPFEGRSQSTRTEESSLLPEDEARRLPL DEIVMVIDAQMPVRAKRIQYFDDRLFKAIHATQTGELPFPEPGGGGPQGNLPLSVRAM PMTPPANGPSGSDAVVETTRQEAGSQTSGQTDVAPKKTAPVVYAVVAEEQRQMEMDFG GRVADAETVGVDDEAQVRSAVDGLDEMEAILQEGDGEKLVAR" gene 125035..125244 /locus_tag="RTM1035_00610" CDS 125035..125244 /locus_tag="RTM1035_00610" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00610" /translation="MKTDYRDAAKLAKLRQIGELIAFRAVLFGYRTPLELTKMECKKI KARRTIHRAFSLTSSGFREDYSGVI" gene 125477..125974 /locus_tag="RTM1035_00615" CDS 125477..125974 /locus_tag="RTM1035_00615" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00615" /translation="MRNPDYLANELLTEFESSGERDLLTIAQRIFDDREPDLRRLPMV RYLFGAFEPLDNALAILRAADLIRIKRDGVPGVKIREHLYLLTTAGEDALGRISAAAP ELSWYRDRACIVARVAGAQGGKALKDRQYLQAEYAGTELSHTIQPITDRVLARLAAIL ERLDE" gene 126058..127641 /locus_tag="RTM1035_00620" CDS 126058..127641 /locus_tag="RTM1035_00620" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00620" /translation="MADRPLRPAPTLTIRRIAFRGEKRGTAQGAIDFDWSELTAGVWA VTSQRNLRGKSTVLEILLWALRGRPKGLQDDVRRWLSSVCVEFDVDDQRYVVEFAVDE RVPRGSLARRRPSGETDELDRFMSDEGFEAAMSRFMMNTLDLDPVTAMQGKEDERKVV EHGWAALSGGLYFGGDHKQLLGDVQMGGLPARMLQMYIGIPWATTVMQASTVKRELEQ EAEKASKAATAAAKDAEIARARIDGELQAAKKILDGFAQVTGTASEIERLAGEVARLS PIALDLAQRLARAEAETTELERLATGDERAVRDLRENIVATQFFNGLKPVCCPRCETR VSNERLKRESADLSCSLCAEEIPIDEMEGADDGLDAIEQRFAAAKAAADRARANTNAL SVKSKSSSDELENARRELTKAATSATFEERRKAELDVARLEGALKERQTPARPVIVSS DVTLINAAHAEADKAYNAGRGDILERLNTEILALGQRLGVQMLEEVKLNTNASLRLTK GGESTSFSKVTAGERLRWL" gene 127716..127880 /locus_tag="RTM1035_00625" CDS 127716..127880 /locus_tag="RTM1035_00625" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00625" /translation="MSPDDLTAVLSELQAISRETVGLQIIIGSANASAIVDQLGEQWC RSATGDDYLW" gene 127906..129822 /locus_tag="RTM1035_00630" CDS 127906..129822 /locus_tag="RTM1035_00630" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00630" /translation="MSALDLLESRLASNQPITIDDLGGVDEILADADRLYAAPFLDIL AYMISAAPPTEGARLHDFLVDGFDAARDPQSFRDAIDQLIRSATLRAAMAQAVVAIFT RRIREHATEREALIAAYSLEGLFRLALEGDVSRHRPLLELAEVAPDAPGPFAQHVAKI GGAAFHAWGDDDLLTMLHRLLDNEEAEGEAAFELGLAHLARALEGEDMATIHARLGTA RLLFERACEADDDRSDARAYRSAIDLVLGFAANRSAADMQETLADLVAAARDRAAVLR TGCVTPWLAPRQDVDLEWFELARTVQRAADDLARPSWINAATTMDRILAVYDASCTIA HGDGLRSMLRPRVEASFLRERGLAAHLDDLLSEGQWSDTQRTIAQHLRCRLDEAYRAG ALPGKAGENEQYPLLARILPKGTSTEQIPSDMVRALEAGLASHAARSTELANPILQRM LALLRDQLSDSSEYKGEVQRSFDAVLQQILIFCADRQNADIRDLGTRGDYLRVRDPSE ADLQSDLRDFLKGNLVGAEVLTEVRGVATGRTDIYISLGGPAFVIELKKHIGEFSPEA AKRYVAQATSYQATNVKLGFLGALELVDRSGPVPSIEECLWHSAYIPEGGALGRHLIV FRVPGRLKSPSALR" gene complement(129850..130254) /locus_tag="RTM1035_00635" CDS complement(129850..130254) /locus_tag="RTM1035_00635" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00635" /translation="MLTSTLQAYIGDVFLACSEKAFGRQLTEDERKDYAKTWSRWGNP SDENIIALFRRLGINDVFNGLSWQGQSTTTLKKKLRIMNQVRNKIAHGQDIMVDGQPY ALTLNSIQGWRRVVQTFGERFEVHALSKIIRD" gene complement(130817..131893) /locus_tag="RTM1035_00640" CDS complement(130817..131893) /locus_tag="RTM1035_00640" /note="COG3704 Type IV secretory pathway, VirB6 components" /codon_start=1 /transl_table=11 /product="TrbL/VirB6 plasmid conjugal transfer protein" /protein_id="jcventer:1101493006644_RTM1035_00640" /db_xref="CDD:33499" /translation="MSVVTYFVETSQAYLDTAAETQFGAVAATVGTLLVLGTTLVVIL VGINMIYQYRAMDGHTAFWLAVKIGLIGIFATNWMQFNAFSSAILYGIDSIAGALVAS VGGGSPGPSGTFAEEFDRLIAELGDYLNAAGSELNWMAGAMLDIVGVLLLSILGGLAA FILVASRLMIALLIGIAPVMIFLTLFEVTKDYFARWLSALISFAIYPIVVAGVFATIT GVSSALIGELGDPEGASNIGALIPFFMMVLMAKGFIVATPFIVRAISGNIMMPALSGG LGGGYSFARAAMGSQQAYNRYLIGGASGAEYAALRARQFFGVQQMPVRQGMGQTGSGG GTGSADSGSKMLAQLARLGRLGRR" gene complement(131906..132319) /locus_tag="RTM1035_00645" CDS complement(131906..132319) /locus_tag="RTM1035_00645" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00645" /translation="MRQAGCTLVLIALVLGLTSAPGFAERNLVPTLDRSFDVCPDRPA EPVWMQQIPLRQVYHRVLVQDIYRAQNLEQVVEIGNCDCATRFPSWDAAEAVFRERYA SNERWEMLQASDAYNRRANAARTAAKAICDAAGNW" gene complement(132316..132510) /locus_tag="RTM1035_00650" CDS complement(132316..132510) /locus_tag="RTM1035_00650" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00650" /translation="MKTFEYNILSFPMTRKTSLSDMQASLNEKGADGWEVVSISTSEF ANVGHTVFLKRETTPAGATA" gene complement(132507..133493) /locus_tag="RTM1035_00655" CDS complement(132507..133493) /locus_tag="RTM1035_00655" /note="COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis" /codon_start=1 /transl_table=11 /product="type II secretion system protein E" /protein_id="jcventer:1101493006644_RTM1035_00655" /db_xref="CDD:29996" /translation="MSLSYLETSLDRIDAAARGDVIEICINPDGTCWGEFQGDHFMRA LDQRLTGVQVRDLGNQIASSANTTMSKDRPIVSVSITYKGRPIRAQVITPPAVLSAMS ISLRFFSSLPLEGIALDFLYGKERKLEDLRVEKKRALRAVVAAGLIDDALAFCVENKL NMIVSGGTSTGKTVAARKILSHVPSEERIVTIEEAAELLPTQPNAVTLIANRDAEFQT ADVLLTATLRMRPDRIILGEVRGKEAMTFLEAINTGHGGSMTTLHAETPQLAVQRLAI AALKTEIPITYADMIQYIENSIDVIIQAGRHDGKRGITEFYLPGATEIGTSP" gene complement(133498..134877) /locus_tag="RTM1035_00660" CDS complement(133498..134877) /locus_tag="RTM1035_00660" /note="COG2948 Type IV secretory pathway, VirB10 components" /codon_start=1 /transl_table=11 /product="conjugation TrbI-like protein" /protein_id="jcventer:1101493006644_RTM1035_00660" /db_xref="CDD:43663" /translation="MSDTENTELEKRLAALEKGSARAPIAAQRRSPLLALIVILVIGA GGALLYLLSQPDEEEALPTATPDVFQNEGDGFGAIETLPPPEPEVVFVGPDPVEPNAE LLAQITALQAQIEELRNAPEPVVEEDTAAAEAIDALTAQIAALQAASEAAQQRFQDEL TARDRSLEQLRMDLELAQLEASRPQPAPAGPTEDELRAREQERLRREEEARRMAELER RATEERAFQERRIASPTIAFGGPSGAAETELAQRSFGEVTDFVLNGALPSTVTQAEVI ANPSNTIIQGTMIQAVMETALDSSLPGQTRAVVSEDVYSVDGARLLIPRGSRLIGRYR AGVDIAQRRVTIAWDRIILPDNQTVQISSFGGDELGRSGVTGFVDTRFPERFGSAALI SLISAAPSAAASEVQDETAADVLEDVGDDLADATDSVIGDYLSIGPVIYVDQGARVTV MVDRDLEIF" gene complement(134874..135545) /locus_tag="RTM1035_00665" CDS complement(134874..135545) /locus_tag="RTM1035_00665" /note="COG3504 Type IV secretory pathway, VirB9 components" /codon_start=1 /transl_table=11 /product="Conjugal transfer protein TrbG/VirB9/CagX" /protein_id="jcventer:1101493006644_RTM1035_00665" /db_xref="CDD:43450" /translation="MLIALLPGLAFAEAIPRGGPNDNRVRLATYQEGQVYRLSVSLTH VTTIEFGEGESIRSIIAGDTEGFEIDGVPGGQAFAIKPVARGVHTNVTVYTNRRSYYF NVQEVRSPTFYVVQFRYPDDAARPTRAIAAQAPNYNYGASARTEFTPTRIWDDGTFTY FAFPRNAPVPAIFRYAGGRERTVNTQTPEDGVIRVSGVNRQWVLRLGEEVVCIEAIPP AEATS" gene complement(135572..136228) /locus_tag="RTM1035_00670" CDS complement(135572..136228) /locus_tag="RTM1035_00670" /note="COG3736 Type IV secretory pathway, component VirB8" /codon_start=1 /transl_table=11 /product="VirB8" /protein_id="jcventer:1101493006644_RTM1035_00670" /db_xref="CDD:33531" /translation="MVATEQEIIEEELVYGALRRERLWQRLGLIGLVFGIIGCLSAAA VSILDVDPPPVVVPYDPATGFALPEASVGASSVTANQAIIEAEVFRYVTDREVYNQLD NDLRIRSVLRRSDGAAESGLRQIWNSANENYPPTVYGPNARLDVEILSINRIGTNRAT VRLRKRLTSINGTQTGLFTTTLLFEFRPETRRSIDEVWTNPFGFTVLEYSVRSDRLEN " gene complement(136243..137055) /locus_tag="RTM1035_00675" CDS complement(136243..137055) /locus_tag="RTM1035_00675" /note="COG0840 Methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00675" /translation="MMGHLLLRTALATTLGVGLQFSALPPAAAQGVPVVDTQNIAQNI QQLRQMIEDEILQNEQLTQLREQLGLLTDQLAELQRTYEALTRLAELPEIIRTEMEDE LNGLLDQEFGDILATIEAIKTGDFSGLSGSGAGEIETQMDRVLADLGFDEDTLSEMAT SGNPGANRVATQATTGALVSAAAQNSYEDAGQSLERVDRLVGLIDDMDELKESIDLNT RVTAELAIALVAMWQLEAIQTVGDGTGGVIDAATIAEEQRFMDFTLPDLRAE" gene complement(137052..138140) /locus_tag="RTM1035_00680" CDS complement(137052..138140) /locus_tag="RTM1035_00680" /note="COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)" /codon_start=1 /transl_table=11 /product="Lytic transglycosylase, catalytic" /protein_id="jcventer:1101493006644_RTM1035_00680" /db_xref="CDD:29556" /translation="MPTNDNGLTARDIVETGDREADLAVQADKLAVRELIAEIEREQL ETLQRILDAQTSFGGQGLPAMVSGLESGSGDPARSVEAVYGTGEIDPNPGGEQMFGDA SETIEQLIIRVAQETSGFAGVGRAGLSPVQWRALLQALIWQESRFTIGARSPVGAYGL TQIMPGTASDLGINPEYYDSPYLQVHGGARYLATQLNTFDGNIINALAAYNAGPGRVF EYGGVPPFRETQHYVSVIPERYNLYLTRIGGIEALGTIDPALLANANLSLTGHGAAFY GNNSPAAIRQAALRIADIVERISETEDVQESVALNTYARAELVRLVAARIRLQAARTR VLSAEELAQASARMAEGAFMDFTIREIE" gene complement(138462..140837) /locus_tag="RTM1035_00685" CDS complement(138462..140837) /locus_tag="RTM1035_00685" /note="COG3451 Type IV secretory pathway, VirB4 components" /codon_start=1 /transl_table=11 /product="CagE, TrbE, VirB component of type IV transporter system" /protein_id="jcventer:1101493006644_RTM1035_00685" /db_xref="CDD:33254" /translation="MPRDDAHDPAIDPRTMTPDWYARETRLAHMLPYVSLVDGQTVRT RVNELFRCIRLEGINSYTTDDAYLDKVTALFARIVAQLGPEFSYYVHKVSKAIKPDLD PIREDSFAGEVDRRWRAKLETSGLRDKTLTLTVIHRPPPKSLLPHLGRSAPDRLKEET RKRLQRLGEAVNVFLSGLTELKPRLLSARSGELVGFLGALNTGTELPLYPANTYGFLS FNVANTRVTFHGDHFELSEGVVGHRYGKSFTIGEYSEGTSCTMFDMLNLPVDMIVTHS FTPINSNLMAGRIKRQKRQMQASQDAALSLLEALDIAADDLEAKRQSFGEHHMVVTLF CDTLEELQALSAEIVNAAATEGVKMIGERVAAKAHYLSQHPGNQPKRVRASAVTNRNF ADFAAFHRTQLGKPAALTPWGRVVTYLPTPEQSAYRFSYHEQGSPDKEPTSGHTLIMG RPGSGKSVLSAFLMTQARRAGARIFVFDYRLGMEMAVRANGGRYASLNAGQPTGLNPL WTETDARGTAWLSDWLTTLLYRADKPLTPAQTNRIQEVVRQNAQATNPALRNWRDFAS LFVSTDDGGDLHQRLLEWTEDGRYGWIFGQSLEDTFSLKGDVVGFDLTGILDSEADKE RMAVLSYLFRRVEREIEDRRPTIIVIDEAWKALDNAYFAERLSNWLVTARKQNTVAVM MTQYASQLERTRTGKTIVEAVPTQILLPNIRAQPADYAMLNLTEKELDVLLNTGSNSR LALIRDDQGSIVVDADLSALGPNLTILGGMEKGEALVGADYRDRPDFWRLS" gene complement(140827..141105) /locus_tag="RTM1035_00690" CDS complement(140827..141105) /locus_tag="RTM1035_00690" /note="COG3702 Type IV secretory pathway, VirB3 components" /codon_start=1 /transl_table=11 /product="type IV secretory pathway, VirB3-like protein" /protein_id="jcventer:1101493006644_RTM1035_00690" /db_xref="CDD:33497" /translation="MAERSPLFLGLVRPPKLLGLPIMYAMVWLFGSVLLFVWVQHIAV LGFAALLYPVLWKAADWDPRFIDVMMTALQETPPTRNRSIHGGDSYAP" gene complement(141098..141391) /locus_tag="RTM1035_00695" CDS complement(141098..141391) /locus_tag="RTM1035_00695" /codon_start=1 /transl_table=11 /product="VIRB2 type IV secretion" /protein_id="jcventer:1101493006644_RTM1035_00695" /db_xref="CDD:46805" /translation="MKQISNLFVASLALFLFIAEPALAQSIDLSPIQSLLQGIVDALT GPLGVVIATLAVLGVFLSWFFNIIDLRQALWVLVGIAGVAAAPTIVAAVFAGG" gene complement(141388..142002) /locus_tag="RTM1035_00700" CDS complement(141388..142002) /locus_tag="RTM1035_00700" /note="COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)" /codon_start=1 /transl_table=11 /product="Lytic transglycosylase, catalytic" /protein_id="jcventer:1101493006644_RTM1035_00700" /db_xref="CDD:29556" /translation="MVLVMESDGSLIPSRSQSSFARNYNDGIGQGSASDGIAIFGEVE AEQEGVQVAALARPTPLPRADVLSGIQTTALRYAGHPGLRRAGLSVTDWLALYRANIE VESAYRQDAISSAGAIGLGQLMPATARDLGVDPRDPLQNLDGSARYLAMMLETFGDPH LALAAYNAGPDAVRQYGGVPPYRETQNHVARVMAVVARLEGSNS" gene complement(142046..142414) /locus_tag="RTM1035_00705" CDS complement(142046..142414) /locus_tag="RTM1035_00705" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00705" /translation="MNWDIEAPNVVTEARFRELVESGYSAEILCQESAHKKGPSYYGV WIMRIVSDDGVEKLLVTARTRTTYNDIKIREFKTISGVVSFFIGLGFAHVDLPLEAGT SRTHKLAPSDKAPSVKGAGS" gene 142658..142876 /locus_tag="RTM1035_00710" CDS 142658..142876 /locus_tag="RTM1035_00710" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00710" /translation="MAESCFAPSRPFLPSDSQAARDYADIIRGDFEDYIQDIQSYFRC LDSERARAFEEAREVSEDYGRFLQLVGD" gene 143001..143258 /locus_tag="RTM1035_00715" CDS 143001..143258 /locus_tag="RTM1035_00715" /note="COG1396 Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, XRE family protein" /protein_id="jcventer:1101493006644_RTM1035_00715" /db_xref="CDD:28977" /translation="MAKTIRSTGQVALCQALVDARKSAGLGQDDLADRLKCHQSLVAR IESGQRRVDVVELVVLARAIGFDPFEVLAIVEAATEPDHRI" gene 143425..143649 /locus_tag="RTM1035_00720" CDS 143425..143649 /locus_tag="RTM1035_00720" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00720" /translation="MNENEVEGVAIANLIATDEETIVGWVYRWNTGALAIRWDIHGPQ RVSKIYPELCDADKAEIDFASLMQLPCRND" gene complement(143753..144142) /locus_tag="RTM1035_00725" CDS complement(143753..144142) /locus_tag="RTM1035_00725" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00725" /translation="MLGRKGSNAAWDNLVRADYALQLVKDRADIDISGPEFNFVRSIR VFDVRYARQHESGRDGDCNRSAAVVLGTYGIQGDFSWRVSSPAALPDAHAGLERWGEH CPSIYHRSVFVEWRDYSGNYGFEQVNY" gene complement(144943..145887) /locus_tag="RTM1035_00730" CDS complement(144943..145887) /locus_tag="RTM1035_00730" /note="COG1230 Co/Zn/Cd efflux system component" /codon_start=1 /transl_table=11 /product="cation efflux system protein" /protein_id="jcventer:1101493006644_RTM1035_00730" /db_xref="CDD:31423" /translation="MPHDHGHTHIDPESGDRRVSIAIWANGLLTVAQIVGGILSGSLA LIADALHNFSDMASLVIAFVARKIARRPADERMTFGYGRIEIVAALINYTTLILIGFY LIYEGGMRMIDPPEVAGWTVVILGGVALVVDTLTALLTYSMQKGSVNIRALFLHNLSD ALASVAVIIGGSLIILYDMRWVDPAITIGIALYILYLAFTEIGGPIRTLMLGSPPDID NAAVVEALRSVDGVADVHHVHLWQMEEHKAALDCHVVLTAGGWGKIEKIKAAIKDRLK EDFNIAHSSLEFEHEDRAHENADLYGHGKPEEEENRFH" gene complement(145877..146647) /locus_tag="RTM1035_00735" CDS complement(145877..146647) /locus_tag="RTM1035_00735" /note="COG1305 Transglutaminase-like enzymes, putative cysteine proteases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00735" /db_xref="CDD:31496" /translation="MAPTDSYLTATRLLDFDSPSISNLVRDRGWHDLARVDRIGAVYD FVRNVIAFGYNRVDDIPASAVLTDGYGQCNTKGTLLMALLRSVGIRCRLHGFTIHKAL QRGVVPELVYPLAPSEILHSWVEVETEEGWINLEGFILDAPFLQSLQKEFSETESLCG YGAGTDCLSAPPVSWNGGSTYIQKTGIVRDFGTFDAPDDFYLKYSQNFGFARDFLYRH VIRHWMNARVRRIRRGMLPKVPGLSRPNHSHEENNRAA" gene complement(146741..147475) /locus_tag="RTM1035_00740" CDS complement(146741..147475) /locus_tag="RTM1035_00740" /note="COG0785 Cytochrome c biogenesis protein" /codon_start=1 /transl_table=11 /product="Cytochrome c biogenesis protein, transmembrane region" /protein_id="jcventer:1101493006644_RTM1035_00740" /db_xref="CDD:42644" /translation="MFEISGVGIVAAFLGGAISFLSPCVLPLAPGYVSYIAGQPAAKS GAARSIAERARSVVLSLWFVLGFSTVFVALGAGASLLGGMLLRWKYELGLAGGFLIVL FGLVMMGAIKIPAMMRDTRPDVKVDGGSAVGAYLLGLAFAFGWTPCIGPVLGSILAVS ATSGADGMALLAIYSAGLGLPFLIIALFTNEIAGRLKRIGAAGRWLYRISGGLMVLMG IGVMTGQISRLAFWLLETFPALGTIG" gene complement(147555..147881) /locus_tag="RTM1035_00745" CDS complement(147555..147881) /locus_tag="RTM1035_00745" /note="COG1742 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006644_RTM1035_00745" /db_xref="CDD:42654" /translation="MTAVLVYPLAALAEIAGCFAIWAWWRLGASPLWLVPGVAALVAF GWLLAQVDTVAAGRAFAAYGGIYIAASILWMWLAEGHRPDRWDLLGTTVCLLGAAIIL AAPRGA" gene complement(147883..148311) /locus_tag="RTM1035_00750" CDS complement(147883..148311) /locus_tag="RTM1035_00750" /note="COG0789 Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family protein" /protein_id="jcventer:1101493006644_RTM1035_00750" /db_xref="CDD:29689" /translation="MLTIGTLAKRTGTKVQTIRYYEQIGLLPEPGRSAGGQRRYGDSE LDRLSFVRHARQLGFSLDAIRELLDLSDHPDKSCAEADAIARRQLKQVEQRMARLEAL RTELQRMVHECSGGHTADCRVLEVLRDHSECLTDHDEIGA" gene 148885..150987 /locus_tag="RTM1035_00755" CDS 148885..150987 /locus_tag="RTM1035_00755" /note="COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis" /codon_start=1 /transl_table=11 /product="Thiol:disulfide interchange protein dsbD 1 precursor" /protein_id="jcventer:1101493006644_RTM1035_00755" /db_xref="CDD:33957" /translation="MRTTLAGYQGLLISLALFLVFVASPVRALESNAYRSEVLTARLI VAEAGIAPGSQFLSAGLKIELEEGWKAYWRSPGEVGLPPEIDWEGSTNLESVDMLWPA PTRFRAFGIENFGYAKQVIFPLQLRLANSDRAAELKGLVDLLICSNVCIPERFELTLP VPLGTGVDAKAATDIATWAARVPVAGPESAIAVSGASLKQDQALVVQMTRPSGWNNPD LFPEFGAGSAFGAPDIRLTSDRTGLWASIPILALSEEQTSLRITVVDEGVAVTFDDVN TTDVVPAPPYASETSQDRGQFFPILLLSFLGGLILNAMPCVLPVLSIKFGSALRMKNR SLSQLRAGFLATAVGTVAFMWVLALAVIALQTLGYAVGWGVQFQNAYFLIALILVVGL FAANLFGVFEISLPSSWMVRLSGRFGRGYAEDFSTGALAAILATPCSAPLLGTAIAFA LSGTTGDILAVFTAMGIGLALPYILVAAWPGFLSRLPKPGPWMISVKIVLGLLLAGTV AWLCWVLIGVTSPTLTGLVLLGLGLIVLAARAYQVQPRNGLLWGMTAVLGMTLAAPAL LPKSSDDVTASITSYWVEFDRSRIAREVSQGKTVFVDVTADWCITCKANKTLVLDREP VLGALGEEGVIAMRADWTRPDAKIQSYLEAHGRYAIPLNIVYGPDAPEGIILSELLSA DAVLEALSAANLSAVRKR" gene complement(151087..152238) /locus_tag="RTM1035_00760" CDS complement(151087..152238) /locus_tag="RTM1035_00760" /note="COG4235 Cytochrome c biogenesis factor" /codon_start=1 /transl_table=11 /product="cytochrome C-type biogenesis protein" /protein_id="jcventer:1101493006644_RTM1035_00760" /db_xref="CDD:33959" /translation="MIWLVLGAMASITVLLFLSGLYRTGEVLNRKDGALVILKDQLSE IDTDQERNLISVTEADAARVEIKRRILAAGRLATRESSRASGRSTIFASAIATPLVAF ALYSQIGSPQIESQPLASRASETQEAANLSELTQRLKTRLEADESGGPSDGWVLLGQT YMRMARYDDAADAFERVTVRDNADISTLLLYAEALIAAENGIVTPQAESVIERASEMA PDDPGPIFYRARILEQDGVPDEARTLLIERLKRADRAYPWMELFLSVANRLGEQVGES PVTLADFFPDSRDARSPGAADIEAAQDMSVEERSAFVRSMVDRLAARLLDDQDNLEGW LRLAEAYSVLGDFDAAQNAADNARTLAESLPETDPMRAAATARLDRINK" gene complement(152235..152720) /locus_tag="RTM1035_00765" CDS complement(152235..152720) /locus_tag="RTM1035_00765" /note="COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein CcmH" /protein_id="jcventer:1101493006644_RTM1035_00765" /db_xref="CDD:43835" /translation="MKSWLYSLVLMLSATTAAWAVEPDELLDDPVLESRARELSKQLR CVVCQNQDIDSSNAGVARTMRTLLRERLIAGETNDEIIAFFVDRYGDFVLFRPRLKPA TYLLWFGPAVLFAVGIGVVFVTIRYRSRAVLDGTADPLSPDEEREFEAIFHENEGRRD P" gene complement(152717..152953) /locus_tag="RTM1035_00770" CDS complement(152717..152953) /locus_tag="RTM1035_00770" /note="COG0526 Thiol-disulfide isomerase and thioredoxins" /codon_start=1 /transl_table=11 /product="periplasmic protein thiol" /protein_id="jcventer:1101493006644_RTM1035_00770" /db_xref="CDD:48559" /translation="MDKPADAANWLEELGNPYERIGSDSEGRVGIEWGISGVPETFVI DANGIVVYRYVGPIVTPEAQDEIRAALAAAGGQS" gene complement(153273..155264) /locus_tag="RTM1035_00775" CDS complement(153273..155264) /locus_tag="RTM1035_00775" /note="COG1138 Cytochrome c biogenesis factor" /codon_start=1 /transl_table=11 /product="Cytochrome c biogenesis factor" /protein_id="jcventer:1101493006644_RTM1035_00775" /db_xref="CDD:31333" /translation="MTPEIGQFALTLALAVAIVQSILPIVGASTGRVLWMESAKTTAV LQVTLVAIAFGALMRSFVVSDFTVRNVVENSHSLKPMIFKVAGTWGSHEGSLVLWTFI LVLFGAGVALLGRNIPVGLKARTLSVQAWISVGFLSFMLFTSNPFERVFPPPLDGTDL NPLLQDIGLAMHPPLLYFGYVGFSIVFSFAVAALIEGRVDPAWARWVRPWTLTAWISL TAGIALGSWWAYYELGWGGWWFWDPVENASFMPWLLGTALLHSAIVTEKRDTFKSWTI LLAILTFSLSLLGTFIVRSGILTSVHAFAVDPARGVYILGLLGVTIVGSLTLYAWRAP QLGSGGVFRPISREAGLLLNNLLLATATATVLFGTLYPLFVEAVTDEKISVGPPYFNA TFIPFMLPLVIIMGIGPFLSWKRADLPGIWQRLRLVFGIAIGVAGIVWYLQTDGPLLA VVSIGIAAWVFVATLREWALRIKLFDLPLSQSLRRARNLPRAAHGMTLAHLGVAMLVL GFVGSTAWKEERVLFAEPGTTVEIAGFEVIFDGVERLRGPNYIAQQGQLRVLKDGREI TLLRPERRNYPVAGTSTTESAIRSTLRGDLYVTISEPATEKASGQWNLRILYEPLVNW IWIGATMLVLGGSLSLSDRRLRVGAPSPKSRSSALQPAE" gene 155883..156449 /locus_tag="RTM1035_00780" CDS 155883..156449 /locus_tag="RTM1035_00780" /note="COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems" /codon_start=1 /transl_table=11 /product="probable lipoprotein" /protein_id="jcventer:1101493006644_RTM1035_00780" /db_xref="CDD:48517" /translation="MAGVAALVFIWLLLWADYRADISQAETEPPFLAQFELTDHMGMI RTEEDFAGRWMLVFFGFANCPDVCPTTLAEVAAVMDGLGEDAAKVQPIFISIDPERDT PMALADFVPRFDAGIIGLTGTSDQIAETAETFPIYFERIEEASAPDGYTMGHTSHLFL FDPQAGFADSWPYGTPAEEILADLRERI" gene 156455..156874 /locus_tag="RTM1035_00785" CDS 156455..156874 /locus_tag="RTM1035_00785" /note="COG1495 Disulfide bond formation protein DsbB" /codon_start=1 /transl_table=11 /product="Disulphide bond formation protein DsbB" /protein_id="jcventer:1101493006644_RTM1035_00785" /db_xref="CDD:31684" /translation="MTRLSGETALVLAWIIALISSLAVLFIGEVLGQTPCVLCWFQRA FMFPLAVVLGLGLWWQDPRVGRYGVALALGGAAVALYHIGLYVGLIPEAIQPCKATGP SCTDDNQVSSHSDSADALVAFTMIGVLSAISLKEKQT" gene 156871..157530 /locus_tag="RTM1035_00790" CDS 156871..157530 /locus_tag="RTM1035_00790" /note="COG1651 Protein-disulfide isomerase" /codon_start=1 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="jcventer:1101493006644_RTM1035_00790" /db_xref="CDD:48572" /translation="MNRRGLVLSVLAVGAAGFGGAAWYATRPQPIAEAVPVAPEVNDV LIRPYSPILGPETAPVTIVEFFDPACEACRAFYPVVKDIMTEHGDAVRVVIRYTAFHG DASVEAIRVLEAARMQHVFEPVLEAVLREQPRWASHGTPAPGLILEIAASGGLDVEAA RTQMLAPGVVAVLNQDRADVEAVGVRQTPTFFVNAKPLDPFGEAELRRLVAAEVAASQ S" gene <157804..163436 /locus_tag="RTM1035_r01140" rRNA <1..5633 /locus_tag="RTM1035_r01140" /product="23S ribosomal RNA" gene <157804..159713 /locus_tag="RTM1035_r01138" rRNA <1..1910 /locus_tag="RTM1035_r01138" /product="16S ribosomal RNA" gene 159847..159920 /locus_tag="RTM1035_t01132" tRNA 159847..159920 /locus_tag="RTM1035_t01132" /product="tRNA-Ile" gene 160099..160171 /locus_tag="RTM1035_t01134" tRNA 160099..160171 /locus_tag="RTM1035_t01134" /product="tRNA-Ala" gene 163891..163964 /locus_tag="RTM1035_t01136" tRNA 163891..163964 /locus_tag="RTM1035_t01136" /product="tRNA-Met" gene 164273..164731 /locus_tag="RTM1035_00795" CDS 164273..164731 /locus_tag="RTM1035_00795" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00795" /translation="MKTGVFALPVTAFLLLIPGGAMAGALEKDTRVQCRSTGSCTIKD DHLATEKSDPYKVYGKPPIKHADRLAAARFYHVRDCLVPAEKRNDAPDLTQIDWRKMR SEAVIEVCLFRIFSSLGNPIAAKRWFEVRGLRRVKLYTSSGRAVREGRQV" gene complement(165001..167649) /locus_tag="RTM1035_00800" CDS complement(165001..167649) /locus_tag="RTM1035_00800" /note="COG0488 ATPase components of ABC transporters with duplicated ATPase domains" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00800" /translation="MKHNWAELYSAKTIQRWHLPEYQHLNPDYGEFRAPLLRWSEIDA SIKDADKLAMLVICCDVLVLDKAPTLRCPTFIFARVIEIGAKADLTFDLSDGTKLSLI IAAQRIVDAATGVPATLTLATVSLDAGGDLVEAETHIAADGSTTAYVMERGEERATKV AASAAALDFLAPGEPLAVMLTTTFQIACLLSTEEPRLAADQVMWVAALTARHPTSHML SSDCHALYKTLIQLMDIGAGALLVPHLDHEIYAEKSKACLALLHQRVQRYDALVEKAR TDEHWRDQVAITIADKQNEAELAANLRAQTEATCEQMRKARQIAAANLLECQTDLSDL MVDFQRGIKNWQRDETIKASIEIFTGVVDLVQQVGTIVASGGTLAAIPVIDNIKMLAG MSVDLSTRAAKSDKFEDVIDISWLFEDNDDGDPPEYTAENAKEDVISYFETRKADREA AQKEKSRQDKIKKGAADLKKAGISAGKDVKGIYDGIMRIVDIAEKAKKLEQQSEDFLV KAAAQVKTSFGAIAPIGLDVVTGGEDGWAQTELGLEEMFDKISDMMDKLGGGRAYRLA LRRLVLHGRTMSQTRLALAKANNDLADAILRERAAQASRRIYDGYLRDLSQSQARDTA LRQLAFGRVLDSKRSVYLAMEAFMRAASYFTLRPIDRSVLPRITDSVDAFSEAVMTHT GTWVTSIALGRSPGPMDVWLDVDLTLAAGAADDPDMVIAQSDARATDETQADGDDGPP ALAIMRSADGSVSVTIPTDHPRFNRWYRVRLDAVRVYADGVHSDGDLWIDIQTDGTYL DKTPSGGTARFVTQPFMRAFVYNPLDVAAMPTGDSATTGRFGEDFFKPTPFATWRFTI SRQDGRNLDLRALTKLRLNLRGSVMS" gene complement(167713..168885) /locus_tag="RTM1035_00805" CDS complement(167713..168885) /locus_tag="RTM1035_00805" /note="COG1196 Chromosome segregation ATPases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00805" /translation="MTDDSIETIDFTKPFEPLMSLIGREGSNRSELWQAWHFLQVYAN WGIRLPTSETDFKAIMGADALKFDFLPPMQDGNLLISKACEAFLKNVFSEVIQVGMDL KVYAETTAGGEDGMLQIILDSVEDGDTETALELLTDLQKDANSASTRAGNVKVALDAF RTELGKALGKLDTARTSLDSDSSTNEETLGILAADANTEGSIAYKHKMLEEARRLHTE ATIAAATSPTYIWVLPPLGLIATGVVMGIYTDKAIQRMKDIEELEDSIQKEGAHLKQA LAARSVFSQGSNGLANVISYSEAASAKCGVVQETWKGIASHISEMAKYLENTTRQSPD GENEVKSKRLLGVALRKVEKNWQTMLPDLSELMTDNYVSIAPGTATVAEVFKKLGG" gene complement(168916..169770) /locus_tag="RTM1035_00810" CDS complement(168916..169770) /locus_tag="RTM1035_00810" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00810" /translation="MRQGIDMTDSSPFQGVSELRSWVASGGVVRAGLPANFMSELLAS LSIFAVLANNLSESLVRIDARWRDMGGDNMLKASLGQLLVLLGDTVAESRHATQQAMS VKVAGNKVFGRIEREIATHGKQIREMTAAIQTSEERMEAAAKAAKEASDKLNAGDYIL HGLEAIFTFGQVDKNRDNLNKLNTSIAIHKGEAASQRQHRELLGVYKAELVALRNGVE RVLTVDQTMTQFQNDLVALGPLLLPAYQQIEKSEATSNLKVANIHLERARPKMDAMSR WIQTFAIT" gene complement(169830..169970) /locus_tag="RTM1035_00815" CDS complement(169830..169970) /locus_tag="RTM1035_00815" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00815" /translation="MIAQPAQHTVILPPLDGYQALSALFSGVLPPAKECVKVVDMTIH FT" gene 170415..171800 /locus_tag="RTM1035_00820" CDS 170415..171800 /locus_tag="RTM1035_00820" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00820" /translation="MISKLRNPSFVWLFAPLLALSLLWSNDAPAQTTGALPDYVIKEF GTPPKVPLGPPSKALRAAMQIAFVDSFTQSSWKEAQSDALIEIVRSEDPRLAWLISDM MRFVTNGSLNITLADAAADLLKVDPPAENHWEVITNTLIAWDIPAPPGYLEIKRTIFT SAVPGWERIFVEGDIDWRMVSWGGVLIGDRGFGQTDEPCNCIPAADNPKVSSAKAATW LDDDDIVFGIVVNGEARAYPRRIMEVREMVNDTLGGRNLGIPYCTLCGAAQAYFTDGL PAGTERPILRTSGLLIRSNKVMYDVRTFSIFDTFLGHAVTGPLAKRGLKLQQASVITT DWGTWRAAHPETTVLVEELALGRDFDFRNGRDANGPIFPVGDVDPRLPVHEDIIGVIA ASGKPVAFQRSAAMIALKRGEKIEFENVRLVLTAGGIRAVDARGADQGSHQAFWFAWS QFHPGTALWSG" gene 172307..172984 /locus_tag="RTM1035_00825" CDS 172307..172984 /locus_tag="RTM1035_00825" /note="COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /protein_id="jcventer:1101493006645_RTM1035_00825" /db_xref="CDD:31088" /translation="MRVLLVEDHPPLAEAVCDALRRSGFAVDHAATAADARELSGLSD YGLVLLDLGLPDGDGLRLLPTLRQGGRVPVIVLTARDQLADRLAGLDGGADDYVVKPV EMPELVARARAVLRRPGDRSDTTLRLGALSLDTAARSVSVNDAPIILGRRELGVLEHL MRNAGRVASRKVLEEAIYTIDDEVTPNALEAAVSRLRRALETAGCPVPIVNVRGVGWM LPREGSE" gene 172981..174318 /locus_tag="RTM1035_00830" CDS 172981..174318 /locus_tag="RTM1035_00830" /note="COG0642 Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="periplasmic sensor signal transduction histidine kinase" /protein_id="jcventer:1101493006645_RTM1035_00830" /db_xref="CDD:30987" /translation="MTRPNRPLAQVLIRRLVLITVIIVVLNMVVVGAYYGSDRAELEA EVVADVTERLGARLEDSGLPADAPARAMFAKHPTAYAFALVDRTGTVVDAMNRALIPS SALDLYADDWVTAVDLPTGRLLYAGHEFRDRTDGLRMVFVMTSDPENLLRHAFLSELR QHVWGPILPMALLLIGASAFVIRRELAPVGRAAAWARTLSPGAVTPPPSGPVPSEVAD LIDGTQRALDRLASALAAETRHAAEAAHALRTPVAVLTARLDALPPGETTDKLRSDLA ALARTVQQVLAASRTEALSAPTEGALDLRRPAEAVLSALAPFAYSKGVDLSLSLPDTP VLARANDEAVQLALTNLVENAVLHGGPGEVEVTLGPGPRLSVRDHGPGLPADAGERIF QPFWRAPGAVAGGTGLGLAIVDRLQRAQGGTVAVQKPKGAGLEIVLTFEASIF" gene 174403..174549 /locus_tag="RTM1035_00835" CDS 174403..174549 /locus_tag="RTM1035_00835" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00835" /translation="MNDGNDVKKMDLRESRKWLSGEVEIRLPKAWLAIGAAAIAVLLI VALD" gene 174587..174925 /locus_tag="RTM1035_00840" CDS 174587..174925 /locus_tag="RTM1035_00840" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00840" /db_xref="CDD:43992" /translation="MKFFAIAALSVTLATQAAFASQITPIADVQRGTMVTVQGIVERI TDEDEFRLTDASGDIRIYVGPNWVPAEVGETVIVNGSVDDDLVFPREIYARSLTRADG TVITFDRRYD" gene 175136..175663 /locus_tag="RTM1035_00845" CDS 175136..175663 /locus_tag="RTM1035_00845" /note="COG3932 Uncharacterized ABC-type transport system, permease components" /codon_start=1 /transl_table=11 /product="ExoD family protein" /protein_id="jcventer:1101493006645_RTM1035_00845" /db_xref="CDD:45947" /translation="MARFAGPRTYALILLIFALPEALPLPVAGLSTILAIPLILVSVL MLLFGPEPRLPVWLSERRVPLRLLKMGSTRIGQALNRLERVSRPRWPGLIGQTRVIGA VCLVLAVVIALPIPFGNMLPALCILGIAVGMLQRDGALVAGSMTAGGLVVTALSTVIA LAGEAVLAVVREVLV" gene 175825..176406 /locus_tag="RTM1035_00850" CDS 175825..176406 /locus_tag="RTM1035_00850" /note="COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00850" /translation="MGAFFWRAKALAAFVLLLWVVQVVNWITGYGFNPAFGLIPRHVS GLDGIIAMPLLHGSFSHLMANTPPLLVMGGLLVATATRALLAVNAVVIGLGGGLVWLF GSSAIHIGASGLVFGWFGFLVARGLVDRSPITLGAALLVGVLYGSILWGVLPGQPGVS WEAHLFGAIAGAAAAFVIRTQVHAPRLGDVNLE" gene complement(176944..178233) /locus_tag="RTM1035_00855" CDS complement(176944..178233) /locus_tag="RTM1035_00855" /note="COG0642 Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="periplasmic sensor signal transduction histidine kinase" /protein_id="jcventer:1101493006645_RTM1035_00855" /db_xref="CDD:30987" /translation="MTPGSIRARMLAWSAGLTLGALVVAWFAISAVLADFVNRRLNAD LTAAARGVMAAAAWDAAGAFAVLPPPADPRFDRPLSGWYWQVSDGTAALARAPSLVTG NLGADGAGRTGPDGAALVAHVARFTAPGDGRRLTVTVTLPAAEVVAELAAIRRPLALA LAALGAALLAAQVLAVRAGLVDLTRFARAVAAVRDGRGETLPPAQAAELRPLSDELSR LIAANAAQVARARAHAGDLAHALKTPLAVLANRADPEDTALIDRMDRIIRWHLKRARA AAAGLDPTAHAAVAPVLEDVALVLTPEARRRGVKLEIAAKGAPDFRGDAEDLAEIVGA LTENAVKWARSSVRLAAAPCPDGVQISITDDGPGIPEPDRARLLARGARLDETVPGHG LGLAIATDRVAAYGGRLDIGQSEGGGLAVTLTLPARG" gene complement(178230..178898) /locus_tag="RTM1035_00860" CDS complement(178230..178898) /locus_tag="RTM1035_00860" /note="COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two-component system, regulatory protein" /protein_id="jcventer:1101493006645_RTM1035_00860" /db_xref="CDD:31088" /translation="MKVLVVEDDRDLAAQIAAALTQAGYTVESAHDGETGEFLGATET VGAAVLDLGLPGIDGIEVLKRWRGAGLTFPVLILTARDAWSDKVAGFRAGADDYVLKP FRMEEVTLRLSTLIRRAAGHATAELAAGALMLDTATGLATLDGMPLRLTAFEGKLLRY LMLHKGRVVSRTELSEHMYDRDADRDFRSMEVVIGRLRRKIGEARVETRRGEGYRLLP VDPE" gene complement(178895..179194) /locus_tag="RTM1035_00865" CDS complement(178895..179194) /locus_tag="RTM1035_00865" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00865" /translation="MRYALVPLILALSATPALADPPGDAVPIDAGAALACVADRYRGE ALRIEDEEDGLVQEIRWLTPAGNVLEIEITGPGCRFLEVDGVGQSEARILPEEPR" gene 179305..180123 /locus_tag="RTM1035_00870" CDS 179305..180123 /locus_tag="RTM1035_00870" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00870" /translation="MKRTLAALILTTALATPLVAQETPLSGTVAEIFGTQIVLTTPEG RLLVTLPEGATVPTPGTRLDLTGTRTGDTFAAATLTAGPAADPAEAMLPAALRGLGLT DIRSRPDDDGETYFYARSGTGWLRAEARGARLLEVQVDGAGLPPALIDAMLPATVRAE PRLAEIARLTEIDLDDDGEISVEGFSAEGMRIEIEFSRNGTLREYDRELDDRRSLSEA AARDRLAALGYTDVGFIERGGRHVTALAINPFGDTVEVRLDDQGRVARERLWQN" gene 180549..181487 /locus_tag="RTM1035_00875" CDS 180549..181487 /locus_tag="RTM1035_00875" /note="COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter, periplasmic substrate-binding protein" /protein_id="jcventer:1101493006645_RTM1035_00875" /db_xref="CDD:32296" /translation="MQLKIATALATTLAFSTASFAQDVVVGVPNWPSVTVTANVIKQV VETNMGLKVELQTGTNPVIFEALDKGSMHIHPEVWLPNQQGLVDQFAAKIELNSNSTS AVQGICVNQAALDAGIVDISDLTDPTKAALLDSDGNGKGEVFIGATGWASTTVEKAKA HGYGYDLVVDLVELDEGVAYSQLDTAIAGAKPWAGFCYKPHHLFTVHPEMTFLTEPAY DAAKWNALTPEEDADYLANSNVTMAWPPAFIQPVFAKDMEANAPQVAALMRNIDITAD DLGAFSYSVVIDGKDAGAVAAEWITANPDRVAAWLK" gene 181567..182598 /locus_tag="RTM1035_00880" CDS 181567..182598 /locus_tag="RTM1035_00880" /note="COG4175 ABC-type proline/glycine betaine transport system, ATPase component" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006645_RTM1035_00880" /db_xref="CDD:48327" /translation="MADPVIELSGVWKIFGTAEQAALADAKAGATKAEVLAKHNCVVG IADASIFVMPGEIFVIMGLSGSGKSTLVRHVNRVIEPTSGDIRVLGQDVRALSPAALR ALRAERIGMVFQHMALMPHRSVQDNVAYPLELRGSPKGTRWQVSAEKLSLVGLQGYGD RLPRQLSGGMQQRVGLARALAADPEILLMDEPFSALDPLIRRQLQDQFMELSHKLGKT TLFITHDLDEAIRVGSRIAIMKDGRIVQTGTPEEIVTRPADDYVRTFVQNISKLGLIT ARTVMEPLISFPHFDVANASYAPTTANLDALIGLCSGSTLPVIIQDGGVPVGIVTKDR LLTAIREGR" gene 182598..184082 /locus_tag="RTM1035_00885" CDS 182598..184082 /locus_tag="RTM1035_00885" /note="COG4176 ABC-type proline/glycine betaine transport system, permease component" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter, permease protein, putative" /protein_id="jcventer:1101493006645_RTM1035_00885" /db_xref="CDD:33916" /translation="MEANLIPRFTGPSAPYYTRAFAAIQSRSGFVLSFNPAAALLGPI WAGMRGMSFLFLLLCFLDLLALNQIVSGLGGNTNSAEAARISQLQDTIATRRVEATEA IAAGDTDTATRATKLADNLQKAVDAAMAETASLTDGASTRVVQGVILLLVIRLATGFF ANAIYERRYTAWRGDQTLPHGAPPLRGAVTLALASLIYGVTLYARIGMPPDWLTTFPA DKTLFSDTAAWFDAGFEAAYASGQGFFDGLRNSIRILVEALEIVLVGTPWPVIMLVIC TLAWQLAGPRIAVFTAAALAYLAFYGFWELSMQTVALLGAASILCIVIGIPLGIWFAR SKTAFAIAQPILDFMQTMPAFVYLIPVIAFFGTGKPPGIIATLIFGMPPVIRLTTLGL TGVAEDVKEAARAYGATEWQVLRGVELPLAKASILAGINQTILMCLSMVVIASLIGAQ GLGSVVLTSLQYAAKGQGLLAGLAILLCAMVIDRIVQGSFRKRE" gene 184111..185109 /locus_tag="RTM1035_00890" CDS 184111..185109 /locus_tag="RTM1035_00890" /note="COG0583 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family protein" /protein_id="jcventer:1101493006645_RTM1035_00890" /db_xref="CDD:30928" /translation="MSDVTRLPAELTFRGLRVFVALEEAGSIAGAAQRLGGSSSGVSQ HITALEAAIGAKLFDRRAKPVTLTPAGQVLRAHAHRILSVVSEAQAELAEISLTSLPQ LNLAIIDDLDASLTPVLVSALQKRFRKCFVYAFSGRSDQIIDRLQTREADIGVTALLP AESTTFQSVPILREAFILLTAKGAIKPGTDPREALARLPFVQYSETMPIGQKVAQHLK RVKLNVPRRYAFEATRSVLAMVVQTGGWTLTTPLNLLDAERFIPMLDVLPLPFAGETR HIHLVARAEELGQLPEALARDCRRILRNVLVPRFEAIVPGFEGAIEVAEDEPQTEA" gene complement(185287..186705) /locus_tag="RTM1035_00895" CDS complement(185287..186705) /locus_tag="RTM1035_00895" /note="COG5598 Trimethylamine:corrinoid methyltransferase" /codon_start=1 /transl_table=11 /product="trimethylamine methyltransferase MttB" /protein_id="jcventer:1101493006645_RTM1035_00895" /db_xref="CDD:46144" /translation="MSEADMVAIYQTALRLLSDLGVGEVPEILVKPFLAAGATFGDGR VFFPQDMVKRAIGMAAKTFTFHGRDPARSIEVGGDAVHFGTGGAAVLTLDIDSGGYRP STLRDLYDFTRLQDTLTNVSWFTRCCVATDLPDIYDLDVNTVFALMKGTTKPVATSFT IHEHVAPIMRMVDIGLGGDGTSGLFHATPFLKTHISPMISPMRYGEDAVMVTLACIEH GIPLSCITAAQSGATAPATLAGFLAQSLAETLASLIMVNVIKPGHPMVFSNWPLVVDL RTGSFVGGGGEISVMNAASAQISNWLGLPSGVASSMTDAKVPDAQYGAEKGISSLAAA LGGGNLIYESSGMMASLLGASFEAFILDDEMHSLIYRTLRGVEVSEETLGYEAICEAV LGPGHFLGGTHTIAAMQRDYFYPTIADRDAPVTWEEKGRPDAWGRAKLAARRVLETHH PSYLAPEAEARMRDEFPIQLDP" gene 187003..189423 /locus_tag="RTM1035_00900" CDS 187003..189423 /locus_tag="RTM1035_00900" /note="COG0665 Glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase/aminomethyl transferase" /protein_id="jcventer:1101493006645_RTM1035_00900" /db_xref="CDD:30753" /translation="MKSTTRVVVIGGGIAGCSTLYHLTQEGWTDVVLLERNELTSGTT WHSAAQVTNFGMTQTMVGLKSHSISLYKELAADPDYPINYHHGDGGIRLANSETTMDG YRHFASQAKVMGVEFEILDAAECARRHPLITTDRLVGGLWDGEDGDIDPAQLCQALAR RARKAGAEVYRNTPVTGLTQLKDDSWIVHTDQGDIACEIVVNACGYRVNEVGAMMGVH HPVMSMEHQYFLTEPIQGIIDFGKRVPLLRCPIDDFYSRQEKQGLLVGFYEQDCRTWG MDGVDPHFVNALCPSDTDRVLPVLENVFKRMPALEEVGIHTIVNGPITYTIDGAPLVG PIPGKRNAFCIIGLRAGIGEGGGHGWLLAQQIVHGEAQYDTWVIDPRRFTTHANVELC ALKAIEDYQNEFRFHLPHEHRPAGRPMKTTPLTPILAAEGAEFGVVNGWERMAYIKPS PDFHETHGFRFNEAFDVVAAEVRAVQTGVGMTEVNGFNRFEITGPGAQDWLDTMFCGR MTRKVGKVGLGYLLNHHGMVKGEATLANIDDGTIWYGSAAASEYHDMDWLTAHMPKDG SVSIRSLTNDHTILVLAGPKSRDVLAAASRGDWSATAFPWLSVRRAFVGIAPAVVMSV SFSGELAYEIHVPNAQLYAAYLALRKAGEAHGLRLFGSYAVESMRMEKGYRHWKADLV TEFTPFESSLGRFVKMDKPHFIGKAALEKMIAEGHRRAFVSMVLDATHATAHGGDAIL CDGRVVGSVTSVGWGHRVGKNIAMGFVEPAFAAEGTALMVEVIGVPTQATVVPECLYD PENLRVRA" gene 189392..190375 /locus_tag="RTM1035_00905" CDS 189392..190375 /locus_tag="RTM1035_00905" /note="COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain" /codon_start=1 /transl_table=11 /product="probable transcriptional regulator" /protein_id="jcventer:1101493006645_RTM1035_00905" /db_xref="CDD:34583" /translation="MTQKTCVSGPSPKENGPKLVEILLAQGFVATELAIAFDSFRIAN RLAGRELFRLQIVSVDAANTLTSLGGMEITVTPMDSTTNLPDLLIVTGGSEMARALRR FLPRLQRVRNAGGLAVVLSDAAQALLTAGAAETAAVHWEGRPMLEEAGIAERGTNTLF NRSGNLVTSAGMAATADVVLALIAEMTSLVLMRDVGRVLLLERLRMAESEQPQGLSDL ASLPDGPLRKALKAMETNIEFPQSTAEIAQSINLSARQLERLFARHLGKSPQAYSRDL RLHRARTLIEGSSLSLTEIALSCGFEGSAHFSRLFKQRYGMTPIMLRSYGL" gene complement(190394..190597) /locus_tag="RTM1035_00910" CDS complement(190394..190597) /locus_tag="RTM1035_00910" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00910" /translation="MIEGADPTRNIYLSVGSLTELIKKAANEAIPDAAQVRMRAGGYS NFSFCDLATDVGLKGGLSLGVGE" gene 190725..191630 /locus_tag="RTM1035_00915" CDS 190725..191630 /locus_tag="RTM1035_00915" /note="COG1231 Monoamine oxidase" /codon_start=1 /transl_table=11 /product="amine oxidase" /protein_id="jcventer:1101493006645_RTM1035_00915" /db_xref="CDD:31424" /translation="MILPKVIVIGGGLSGVTAARALHRAGIDVQLIEARDRLGGRILS VDDSGNSSGPFDLGPSWFWPGMQPDFGHFVNGAGVTSFAQSDTGDLLFQRGQGSVQRY SGMQQEPTSMRMGGGTAALVSALARDLPADAIRLNTCATHLALTATGVDVTTEGGSLS APHVLLAVPPRLLAAQIAFDPPMPASVLRLWQGTPTWMAPHAKLVVVYDRAFWRDAGL SGAARSQSGPLVEIHDATTATGQAALFGFVGVPAKPVCRRVRRLSSPPLSSSWNSFSA RMRPGPKPRFTRTGPPIRSRPRLTT" gene 191489..191800 /locus_tag="RTM1035_00920" CDS 191489..191800 /locus_tag="RTM1035_00920" /codon_start=1 /transl_table=11 /product="putative amine oxidase" /protein_id="jcventer:1101493006645_RTM1035_00920" /translation="MQAGAAAVIAASVQQLEQLFGPHAARPKATLYKDWAADPLTATP DDLTAGDHPSPNPGPWVEGAWQHRLTLIGSETSRTEPGYLAGAQEAAEAGAAALLARL L" gene 191922..192311 /locus_tag="RTM1035_00925" CDS 191922..192311 /locus_tag="RTM1035_00925" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00925" /translation="MKKIILTSMAAAVALSTGARAQDCDPSAATAAGVIEIVQFRLAE SVEREHFVAAAANTMLALCAMDGFIGRVLSEGEDGMWMDHVRWTNSEAAKTAMAGSME NEALTPFIMSIDPNSMVLSYHIPLVLK" gene 192316..192621 /locus_tag="RTM1035_00930" CDS 192316..192621 /locus_tag="RTM1035_00930" /note="COG2378 Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00930" /db_xref="CDD:32525" /translation="MRRADRLFDINQVFRDGKLHTGEQIADRMGVSLRTIYRDIETLA GAGVPIVGERGVGYIMSDPVFLPPLNITQSELEVLELGLALVAASFEHKMRPVGSVA" gene complement(192618..193175) /locus_tag="RTM1035_00935" CDS complement(192618..193175) /locus_tag="RTM1035_00935" /note="COG0450 Peroxiredoxin" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen" /protein_id="jcventer:1101493006645_RTM1035_00935" /db_xref="CDD:48519" /translation="MEDTMLIPRQTAPALTVPTLDHGPFNLATATPQRGTVICFYRGL HCPICATYLTELDKQTPAFAERGIETIAISADGADRARAMADKIGATALRFGHDLPLP VARDWGLYISTSRGKTSIGIEEPALFSEPGLFIVNTDQSIYYLSVQSMPFVRPSFREL LGAIDFAIEKNYPARGEYTGSLGTA" gene 193202..193990 /locus_tag="RTM1035_00940" CDS 193202..193990 /locus_tag="RTM1035_00940" /note="COG2207 AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AraC family protein" /protein_id="jcventer:1101493006645_RTM1035_00940" /db_xref="CDD:34583" /translation="MGFMTVDVPNFVSDRPILRQDRLSSLMSALRPVATPCAADDPRA ALVLTSTLLVLFTRPPNTPEPGALVATRLECALPLAQVLHGSPARLAVARENCPGLAA LADVLVAEAQSGRCGSQLAMARLFEAMLVLVLRRAIDAGPPDPGLLAGLSHPRLHRAL IAIHAAPARPWTVEMLSAEAGMSRSRFMADFSDCLGTSPLAYVTRWRLGLAHIALIQG ASIPVAARSVGYGTTAGFRRAWLRHFGDIPLAAVGSGPAEHPIL" gene 194235..194858 /locus_tag="RTM1035_00945" CDS 194235..194858 /locus_tag="RTM1035_00945" /note="COG0625 Glutathione S-transferase" /codon_start=1 /transl_table=11 /product="glutathione S-transferase-like protein" /protein_id="jcventer:1101493006645_RTM1035_00945" /db_xref="CDD:48109" /translation="MKIYDVEGFPNPARVRIALAEKGAFENVSFIPVDVMGGEHRTEA FKKINPDAAVPCLELDDGTRISQCNAIIEYIDGEFENGPSLTGENHRERAVISMMNIR AETGLLNAVGNYFHHATPGLGPKLEVYQNKDWGLKQRDVATNTMAYLDEVLSKNAYVA GDKFSMADITVFAGLAFADFAKIEIPANLTNLAAWRKKMNARPSIAA" gene 194894..195562 /locus_tag="RTM1035_00950" CDS 194894..195562 /locus_tag="RTM1035_00950" /note="COG3806 Anti-sigma factor" /codon_start=1 /transl_table=11 /product="anti-sigm factor, ChrR" /protein_id="jcventer:1101493006645_RTM1035_00950" /db_xref="CDD:33600" /translation="MELNADFSKRVVVHSNALEWQASPMKGVDRRMLDRIGGEVARAT TIVRYAPGSKFSAHTHTGGEEFIVLDGVFQDEHGDFPAGTYVRNPPTTQHTPGSEPGC TIFVKLWQFDMNDRNQFRKNMADELAAPVDGVATAILHEDARETVTYRHLDAGASLAL DAEGGLELLVIGGEITENGNELHTGSWLRLPDGGSLHAVAGANGAKLWMKTGHLVYAQ PPAV" gene complement(195863..195964) /locus_tag="RTM1035_00955" CDS complement(195863..195964) /locus_tag="RTM1035_00955" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00955" /translation="MKKVMPSELPEKQFAHHVCGAEPPLIAEISTPD" gene 196100..196645 /locus_tag="RTM1035_00960" CDS 196100..196645 /locus_tag="RTM1035_00960" /note="COG1309 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family protein" /protein_id="jcventer:1101493006645_RTM1035_00960" /db_xref="CDD:31500" /translation="MFKSRAEQILDYAEREIRKNGFDGVSFRDIAEAIGVKSASIHYH FPTKAELGAEVTSRYANRFIDSLGAPDDPSETASDRLLRLADGYIEAYRVESSTCLCA VLGSIATHLPEGTSDAVRAFYNRLRDWLSKALAGNKTTLTPNLVVALFQGAMVLSLTT GDETPLLEARQHVVSCVAQIA" gene 197081..198475 /locus_tag="RTM1035_00965" CDS 197081..198475 /locus_tag="RTM1035_00965" /EC_number="5.4.3.8" /note="COG0001 Glutamate-1-semialdehyde aminotransferase" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde 2,1-aminomutase" /protein_id="jcventer:1101493006645_RTM1035_00965" /db_xref="CDD:30350" /translation="MHVIQELRMPGRLNESRLAEILTRESAAFASRTAGSAALLETAR GVMPDGVPMAWMAGLYRHRPIFVAEGFGSCFRDVDGNTYLDFNHADLSNTIGHGENAV TRRIARQAARGMQFLLPTEDAIAVSQLLRNRVGLPMWQYTLSASAANTEVIRIARAFT GRQKIVLFEGKYHGHIEPTMAEGGAPGANADAAPDGMGISARATADTVNVPFNDIPAL ARALQDGDVALILTEPALTNCSLVLPEPGFLEEAYRLAKAAGALFALDETHSWQFAYG GLIRAHGLSADFVTLGKGLGSGMPLGAYGMTAELGGFVERHRDVDVAQVRGLAIGGTT YGSAITLAAARAVLEDILTEAAYARVAVLGARLADGIERIITTHGLPWRAFRYGPRSG FCLAPELPRNLDEALPSLDQAFSDARRVFMANRGIWEAIASAGPQVSFVHTEADIDRY LEVAEDFIAAVSAD" gene 199175..199420 /locus_tag="RTM1035_00970" CDS 199175..199420 /locus_tag="RTM1035_00970" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00970" /translation="MLGTDNSVRILGLPIHYFIAITLGSLGVLLWSMVWCRYANQLED EIEAENAGFFHSRETGLEGSGVQGKGPDALALTEGTK" gene 199417..201057 /locus_tag="RTM1035_00975" CDS 199417..201057 /locus_tag="RTM1035_00975" /note="COG4147 Predicted symporter" /codon_start=1 /transl_table=11 /product="Na+/solute symporter (Ssf family) protein" /protein_id="jcventer:1101493006645_RTM1035_00975" /db_xref="CDD:33899" /translation="MTPADWQLQNIWLGLGITSAVFGLYYAVALFSKKKTANATDLYL AGRSIGPFVNSLAASSTWMSVATFLGVVALIQQLHLPFVYMWVQLILSVPLLVMLYGA SLYRMEVFTSVHFVQTRYGRSTAFLAAGWMLLIMLMYMVGQFIGIAKVFEVLLGLPYT PSLILSALVITGYITIGGMKGATYNDAIQMVIMMIALLVPLAAILKAMGVPGFWFPPL GYGSLTDTLLERIPTFFDLKFEARFYVALFVALTIGTLGLPQLAQRVLTSENIKSARR VVPWFCLWVGLMFLGTYALGFAGVYHFALIGQELTPEAADKTTLLLNLAYNPDWVSAF VIAGVLAAGVSTIAGLMIGVATVVGHDIVGVLRPHLTEAKQLRYGYLALAGTGVVSLL VSLDPPAFLITSIFWAFGMCATAITPMVVLGVWSTRINSWGAFTGSLVSGATYILLSP YVLPDFSVGTGLVAKLGFATALISVPVGFILTILVSLAAEKLKGEVAAQERYTAQELV EKMHGWAQVTRTRYDSSEWLLILAALWAPILLWGLVPW" gene 201036..201554 /locus_tag="RTM1035_00980" CDS 201036..201554 /locus_tag="RTM1035_00980" /note="COG0477 Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00980" /translation="MGLGAVVNATIFTESRWQAVLGLPTAGLLWSFATFLAHSEQVEA LGVAKSEALFYVALGGMAQTLLLWLGFTVVIWAMTRAFGGRVPLLRLMTLVSASSLAL WVGAPAAAFWINGAPGHTAIAATISLISMALFLHALTRGLSADLHWSFLRAAGAVSAA SVFLASFAFLAL" gene 201586..202359 /locus_tag="RTM1035_00985" CDS 201586..202359 /locus_tag="RTM1035_00985" /note="COG1011 Predicted hydrolase (HAD superfamily)" /codon_start=1 /transl_table=11 /product="putative 2-haloacid halidohydrolase Iva" /protein_id="jcventer:1101493006645_RTM1035_00985" /db_xref="CDD:31215" /translation="MTIDAFVFDAYGTLFDVQSVSQITNQEFPEHGELITQVWRLKQL EYTWLRSMMGSYRSFWEITEESLNYTLNAIGVTAEKAVRDRIMDKYLHLDPHVDCLTA LDALEGVPLAILSNGNQEILDALVSNSGLDAKLQSVISIDKAGIFKPHKDAYELVEAV LKVKPENTIFVSSNAFDACAAKNFGFRVAWIERVTPEALAEEISSAAVVGPTTMFKLL RMQMESFGMEPDYRLKSLNDLAGLIDRADKAAAPASLRA" gene 202620..203201 /locus_tag="RTM1035_00990" CDS 202620..203201 /locus_tag="RTM1035_00990" /note="COG1309 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family protein" /protein_id="jcventer:1101493006645_RTM1035_00990" /db_xref="CDD:31500" /translation="MGRHREFDEKKVLDGAIEVFWRRGYSGASIQDVCDAMGLNPGSV YAAFGSKHGLFLAVIRRYLDSMNRPGLELLETNPCGLDGIRAYFDFIANGIVNGNRRW GCLGTNAFVELKEVDDDVAQLMLDHLTRLEIAFREALKRDSFEHPESQAKYLLCIAQG LNVFAKTSPNRETLQTIIDASISSLVSPRLAAN" gene 203461..204048 /locus_tag="RTM1035_00995" CDS 203461..204048 /locus_tag="RTM1035_00995" /note="COG3758 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_00995" /db_xref="CDD:45854" /translation="MQTLKFGALIDVPWKNGGGVTRSIAKGLYLDQPAWTLSRADVSQ DGPFSDFAGMVRILTVVSGGTMTLDTPTSSIEARTWEPIRFDGGLKVYARLANGPLTD LNLMFDPQSCEGEVLTRRGPLIGDLTRPDHGLMVLHVLSGAPEIDGVAVATGDTVFVT TPNVALTLTEDAALLEIRLTYLDQSKAIRLCIAER" gene complement(204009..205346) /locus_tag="RTM1035_01000" CDS complement(204009..205346) /locus_tag="RTM1035_01000" /EC_number="3.8.1.8" /note="COG0402 Cytosine deaminase and related metal-dependent hydrolases" /codon_start=1 /transl_table=11 /product="atrazine chlorohydrolase" /protein_id="jcventer:1101493006645_RTM1035_01000" /db_xref="CDD:30056" /translation="MLATGWASNVRLDVSHGRITALETDQKTKQGDTTVDTLLPALAN LHSHSFQRAMAGMTEFRMAGKDSFWTWRDLMYRFTAHLTPEHVEAIAAFVFLEMQEAG YASVGEFHYLHHQPGGMPYEDLGELSARIAAAAAATGIGLTHLPVLYTYGGAGQMALT AEQARFGNSVDRFNDLVARARGAIADLPKDCRVGIAPHSLRATSPDDLKTVLAAHEAG PVHIHIAEQPQEVADIQAVLGARPVEWLLANAEVNADWCLIHATHMTDAETANMARSG AVAGLCPITEANLGDGPFNGPAYLNAGGAFGVGSDSNVLISLTEELRTLEYSQRLRDI ARNVLVVGEGSVGETLYCGAAKGGAQALGRGTGDISVGAWADLVAVDSEAPALCALKE HQLLDGLVFAAKDEIVTDVWSAGRHAVKQGKHIHRDAITAAYRSAMQSLMALL" gene 205425..206663 /locus_tag="RTM1035_01005" CDS 205425..206663 /locus_tag="RTM1035_01005" /note="COG1228 Imidazolonepropionase and related amidohydrolases" /codon_start=1 /transl_table=11 /product="imidazolonepropionase" /protein_id="jcventer:1101493006645_RTM1035_01005" /db_xref="CDD:30039" /translation="MKFQQRWPEMTENGKVFVNLNLASLCDSGPKYGWIEDAAVVVVY GLIDWLGSREALPSLYNSFPQIDLGGRVVTPGLIDCHTHIVHGGNRAVEFEMRLNGAS YEEVARAGGGIVSTVKATRAASDEELLTTALARVDVLIAEGVTCIEIKSGYGLDIETE LRMLRVARAIGHKRPVRVKTTFLGAHATPADYAGRDDAYIDEVCIPALRAAYAEALVD AVDGFCEGIAFQPAQIARVFHVASSLGLPVKLHAEQLSNIGGAKLAAGYGALSADHIE YLDEAGVEALAQAGTVAVILPGAFYTLRETQAPPIALLRKHGVPMALATDINPGSSPL NSLLLTLNMGCTLFRMTPEEALRGVTQNAARALGLSDAGTLAVGKRADMAVWNIKHPA ELSYRIGFNPLHSRIFGGTL" gene 206660..208198 /locus_tag="RTM1035_01010" CDS 206660..208198 /locus_tag="RTM1035_01010" /note="COG2986 Histidine ammonia-lyase" /codon_start=1 /transl_table=11 /product="histidine ammonia-lyase" /protein_id="jcventer:1101493006645_RTM1035_01010" /db_xref="CDD:28771" /translation="MTTLTLTPGAVTLDHLADIYWNEASVRLDPASHSAIERAHARIA KAVAGTDAVYGVNTGFGKLASVKIASKDTTTLQRNLILSHCCGVGPAISRRETRLLMA LKLLSLGRGASGVRLEVVAQIEEMLAKGVTPVIPAQGSVGASGDLAPLAHMAAVMMGH GQAEYLGKILPGAEALAAAGIAPLVLGPKEGLALINGTQFSTAFALAGLFGAWRAAHS ALVTSALSTDAIMGSTAPLQPEIHALRGHPGQIQAAETMRALLAGSEIRESHIVGDAR VQDPYCIRCQPQVTGAAMDVLRMAARTLGIEANAATDNPLVLIEADLIVSGGNFHAEP VGFAADMIALAIAEIGAIAQRRVALIVDPVLSFNLPPFLTPNPGLNSGYMIAEVTTAA LMSENKHLANPCVTDSTPTSANQEDHVSMAAHGARRLGAMNENLARILGVELLCAAQG IDFRAPLATSDTLQRVVARVRQDVAALGEDRYLAPDLERAAVMIASGDIVNAAGIDMP ELIA" gene 208582..210249 /locus_tag="RTM1035_01015" CDS 208582..210249 /locus_tag="RTM1035_01015" /EC_number="4.2.1.49" /note="COG2987 Urocanate hydratase" /codon_start=1 /transl_table=11 /product="urocanate hydratase" /protein_id="jcventer:1101493006645_RTM1035_01015" /db_xref="CDD:41237" /translation="MTDPRKNTRDIYPATGTKLTAKSWLTEAPLRMLMNNLHPDVAEN PHELVVYGGIGRAARTWKDYDMIVASLRELEEDQTLLVQSGKPVGVFQTHKDAPRVLI ANSNLVPHWATWDHFNELDKKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHY NGSLKGKWILTGGLGGMGGAQPLAAVMAGACCLAVECNPDSIDFRLRTRYVDEKAETL DEALAMIQRWTAAGEAKSVGLLGNAADVFPELVKRGIRPDIVTDQTSAHDPINGYLPQ GWTMAQWKEKRESAPKEVEKAARASMKVQVKAMCDFHISGVPTVDYGNNIRQMAQEEG LDNAFDFPGFVPAYIRPLFCRGVGPFRWAALSGDPEDIYKTDAKVKEILSEDKHLHNW LDMARERIAFQGLPARICWVGLGVRHKLGLAFNEMVRNGELSAPIVIGRDHLDSGSVA SPNRETEAMKDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVICCD GTEDADRRIARVLWNDPATGVMRHADAGYEDALDCARENGLNLPGIL" gene complement(210294..210983) /locus_tag="RTM1035_01020" CDS complement(210294..210983) /locus_tag="RTM1035_01020" /note="COG2188 Transcriptional regulators" /codon_start=1 /transl_table=11 /product="histidine utilization repressor" /protein_id="jcventer:1101493006645_RTM1035_01020" /db_xref="CDD:32371" /translation="MKVTYKEVKADILGKIIKGDWAPGNLVPNEVDLAETYGCARATV NRAMRELSDEGIIERRRKAGTRVRMSPIRQARFDIPLVRDEIEDKGASYRYSLSSRVV EVAPDWLRARLKLPEEGRVLHLVCMHYADCIPYEHEDRWINLTALPAAEFVDFSECGP SEWLVATIPFSEAEINLSAGSADQSLADYLACSVGDPVFNIERSTWWESDAVTYVRFS YRPGHRLTSRY" gene 211503..212531 /locus_tag="RTM1035_01025" CDS 211503..212531 /locus_tag="RTM1035_01025" /note="COG2855 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01025" /db_xref="CDD:43525" /translation="MITTISPRQQALGFGHFITRNAFGVVIAVGITGLAALLHHLGLA TTIGLPILSILIAMVIGNAIPAPKASLPGLQIASRPLLRFGIILLGLQVTLGDMLALG LLPLAALVALVMGTMGFTVWVGRLLGVEKSLTVLIASGTSICGASAVLATASTISAKD EDVAYGVAMVTLFGSVAMTLLPMTSAYLNFGPMVHGFWTGGTIHEVAQAVAAAFQHDE DAGTVGTMVKLARVLMLVPVLLLVGALFNKGHQDASSKRAPFPMFVLGFMAMVGVNSV LDIPADLRAHFATLTACILATSLAAIGFQTRFPALLARGPRPLVLAAVSCCFVSGAGL LLALALFP" gene 212541..213428 /locus_tag="RTM1035_01030" CDS 212541..213428 /locus_tag="RTM1035_01030" /note="COG0583 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family protein" /protein_id="jcventer:1101493006645_RTM1035_01030" /db_xref="CDD:30928" /translation="MTLEQLRIFVAVATELNMTRAAEVLRLSQSAVSAAISALERRHD VQLFDRVGRGIALTPAGAVFLTEAKDILNRSQQAERVLEDLSTLRRGSIQLVASQTVG NYWLPRQLMSFHSSNPDIDLSVEITNSDRVMDWITSGKAELGFIESPVTMDGLEATHV GTDQMVLIGSREIGLQIDRAMLMSLPWVIREEGSGTRAMLLEFLSHYRLTLSDIRIAL VLPSNEAIASAVSDGLGVALMSRLAAGFLGQSSEIAIRPSPQPDRALTMVLSTQRHRS SAVQAFVRQIKAGSNPALI" gene 213536..214330 /locus_tag="RTM1035_01035" CDS 213536..214330 /locus_tag="RTM1035_01035" /note="COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="ABC-type phosphate/phosphonate transport system periplasmic component-like protein" /protein_id="jcventer:1101493006645_RTM1035_01035" /db_xref="CDD:33034" /translation="MYNLNPALSSHWRSLFEHTAAIAGVPLDVIDYAAPAPLDLLWAR TDLACVFMCGWPFQRATRAFQVVAAPIPEYHATLHPLTGPQYCTNLVVSDAAPYNRLQ DTFGGRIAWTDRGSHSGFNAPRKLLLDHLNGQERLYSESIGPVVTPRASLNSILEGRA DVAPLDSYFHSLLARHEPDTARRIRVIAQTPASPIPLLVAAPEIAPEIVAKLGEAFAQ AADSPQLAPYLKDLCLSGFAIPSRKDYAVTDQWHAEAMAAGYHEPC" gene complement(214392..215396) /locus_tag="RTM1035_01040" CDS complement(214392..215396) /locus_tag="RTM1035_01040" /note="COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog" /codon_start=1 /transl_table=11 /product="ornithine cyclodeaminase/mu-crystallin" /protein_id="jcventer:1101493006645_RTM1035_01040" /db_xref="CDD:32552" /translation="MTEIWVDYLNALDIAELALTDDEILAAVESALIAQGNKQTVIEP RVHLVPESSDKGHFNVLRGYVKSLGVAGVKVVGDFVDNYKVGLPSELAILNLFSPETG VPLAIIDATAITDMRTGAVTALGAKHLARKDSKILGHVGSRGTSYWNVRLLNHLYDFD EIRIHSRRPESRNAFGERLEKDLGKKIIVTDNWQDCLEGADILIEATRLPEPTPMFKT EWIKKGALVIPYGTMSAVEFDLTDIMDKMLVDDWGQCGPGRPYGSLRAHVDAGKLSEE TLHAELGEVAAGLKPGRENDDETILFWHRGLSSTDVALGAALVAKAKANNIGQKIRFR " gene complement(215434..216381) /locus_tag="RTM1035_01045" CDS complement(215434..216381) /locus_tag="RTM1035_01045" /note="COG1125 ABC-type proline/glycine betaine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC transporter related protein" /protein_id="jcventer:1101493006645_RTM1035_01045" /db_xref="CDD:31322" /translation="MMIELRNVTKTYNSGGRPAVDDVSLQIETGTTVALIGPSGCGKT TTMRMINCLQVPTSGQILVNGQDVTKVDPQVLRRSIGYVIQQVGLFPHMTISENVATV PRLLKHDPAKIRKRVNEMLELVGLDPDEMGPRLPNALSGGQRQRVGFARALAADPEVM LMDEPFGAIDPITRSKVQTEFKEILKKTNKTVVMVTHDLDEALKMGDRVAIMRDGKLL QYDAPIDILARPNSLFVADFLGTDRALKQLNLISVRDRMTPATSTDFPTIAPSASLHF ALSEILAQKVEGLIVREDGGPVLGFINRAAVLGPVALAS" gene complement(216378..217034) /locus_tag="RTM1035_01050" CDS complement(216378..217034) /locus_tag="RTM1035_01050" /note="COG1174 ABC-type proline/glycine betaine transport systems, permease component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="jcventer:1101493006645_RTM1035_01050" /db_xref="CDD:31367" /translation="MNLLDAFTWFLAHKSTFMIALNQHLWMSAVAMSIGAAIAIPLGF LVAHSRRASFVAINIVGAIRSIPSLAILSAALPLLGIGFLPSVVALIVLAVPPMLLNT VVGVAEVDLTVTDAATGMGMSRLQIALHIELPLALGPIISGVKIASIQVIGGAALASF VGGGGLGDFISTGIAIMDMPRLLVGAVPIALLAIAAEVGFSFLERRVSYRNVNLSGEP " gene complement(217034..217609) /locus_tag="RTM1035_01055" CDS complement(217034..217609) /locus_tag="RTM1035_01055" /note="COG1174 ABC-type proline/glycine betaine transport systems, permease component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="jcventer:1101493006645_RTM1035_01055" /db_xref="CDD:31367" /translation="MYLLIVPITIAFVISLAVGIYSAKKPRLYSFIMIVTGILFAIPS LALFALFIPIFGIGTIPAIIGLAAYSLMIMIRNIATGFQNLPPEVIDAAHGMGYGRWR RIYEIELPLALPFIIAGLRIASVTVIGIATIAAYINAGGLGTIIFEGLDQRYPEKILV GGALTSALALSVDFSLSTIERKLRKTTGGAM" gene complement(217660..219153) /locus_tag="RTM1035_01060" CDS complement(217660..219153) /locus_tag="RTM1035_01060" /note="COG2986 Histidine ammonia-lyase" /codon_start=1 /transl_table=11 /product="Histidine ammonia-lyase" /protein_id="jcventer:1101493006645_RTM1035_01060" /db_xref="CDD:28771" /translation="MSARTIFKIAHDFTPVSISPDTAKTIAASYSCLQEHAASGQAIY GVSTGLGAAVDTVMKVRTGDDQHLIPRARAVGVGRIATEVETRAMIATRLSRVCVGHS GMSYAVAAALAGMLNHRIVPRVPMLGSVGEADLAPMAHIAEVLTGRGTVIRADGSLTD GRTAFLEAGLELPKFGVKDGLALVSSNSAALGLAALAIADVQRVFAAQVAAVALSYEG FRASIAPLAPAATALRPAPYQGTIAESLLSLLEGGNLMQPKAQRRLQDPLSLRCVSSV FGAVQSTICHARDAVALELATSDDNPAVNTALDLVLPNGNFDPTHVALSFDTMALALA RLAAMTGERIMKMMSAEMSDLPRFMAPDVGGSNGFATVQKTVSALVATIGQQAMPMPF AAIPVADRVEDYASLLMPGVEKFSAIVENLRYLVGIELMVAAQAVDLRTGITLGQGTA AIQQAVRALVAPLTQDRAASPDIVALAEAIQQQRLGPILTELEEQLS" gene complement(219239..220117) /locus_tag="RTM1035_01065" CDS complement(219239..220117) /locus_tag="RTM1035_01065" /note="COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)" /codon_start=1 /transl_table=11 /product="Substrate-binding region of ABC-type glycine betaine transport system" /protein_id="jcventer:1101493006645_RTM1035_01065" /db_xref="CDD:31918" /translation="MKNLVTTLATSAALFIGQGAQADNFVVGTKNFTEQFILGEIYAA ALESIDIPVERKINLGGTLIAHAALTGGDIDMYPEYTGTALSAVVKGEMSSDAQVVYD TVKSYYDTELDLKWLEPAHINNGYAMLVRRETAEKYNLKTLSDLGVAAPELSIGGGPE FPDRADGLVGLRNVYGAEFREFRMFAKLGLRYDALAAGQIDVNNGFATDWQIAAEDYV VMEDDKGLFPPYFVAPVVRKDALEEFPGAEEMLNRVSDQLDNDIMRTLNKRVEVGREE ARDVAQDFLKSVGIID" gene 220448..220963 /locus_tag="RTM1035_01070" CDS 220448..220963 /locus_tag="RTM1035_01070" /note="COG1846 Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family protein" /protein_id="jcventer:1101493006645_RTM1035_01070" /db_xref="CDD:41115" /translation="MDRLANLLNAAATAISDAQAMSMARHADLKPSTTGAILTLGQHS ALTLSELARIIGLSHSATVRLIDGLADKGLGRRGDGQDRREVAVSLTIEGLRLYADLR KAQSEILIPLTEGLTPMERATLEVALSRILAALTKSRQSADHICRFCDEGVCGQDDCP VEIQAVALSRA" gene 220960..221871 /locus_tag="RTM1035_01075" CDS 220960..221871 /locus_tag="RTM1035_01075" /note="COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01075" /translation="MTDAISHPVPSRSVAVAAMLCSAACWGGATVMTKGALDAFDPFI LLVIQLVASVAALWTAVLLSSTSLLAFRPMVRAGSTGVLEPGLAYAVGVPGLALTTAG NASVIAALEPVFIFLGAWLLFRTRPTLRAIVAIVTAVIGVTLVSLTDPAGLGGGSVLG DGLVLFGTALAAAYVLASSKLAVTMPAVLLTALQQTAGLGLVVILSAFALFAGWQSLP ASVTLPALGLAILSGLIQYALAFWLYIVGLKGIAPGLAGMFLTTTPIFGVFGGIVFLG ERLVLSQLLGMTLVIVSLVALLRSRGG" gene 222622..223779 /locus_tag="RTM1035_01080" CDS 222622..223779 /locus_tag="RTM1035_01080" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01080" /translation="MPDAGTGSMSQKMMQRLTARRAVCAMLVLPAMMLTTMGPERVAA QSFCGPTITACDLQQDQLCLERVLACGEYDTIIATLFAEDVAPTLDQKFALGAAYFGN HVRARATGLQCRAVVKGREWLRDYLGTVDTEFRQSASFGTLAQMRQIYQATQMLGELD QVGGCPESALTRARVQAIAAAEATQFARAIFLTPPDAVADVMGTLNIALRTFVSQASD LETGIALRRIEIEAAGRVLGSVRGLFDEVFGGVSGEGAALRVDSVVLDQLLADGRARL RRVENREDAFRVALGGFGPADYAEVRTETVRKAQGFLKESAFHINMIGVLMPTDPARP FLQLEGVLGADSPANAAREALSDIRLDWRSLGDANGNCALPNAAERVWYCR" gene 223776..225080 /locus_tag="RTM1035_01085" CDS 223776..225080 /locus_tag="RTM1035_01085" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01085" /translation="MRQLLWITLVICLSGPAEAQNAVLDRAYGISKLDGFWRATLGSE APDLAAFEMFESVAAVPEPVREPAVDFGVPIIGEVVGETAPGTDGQGARLAFPVIPLT EEEAGPLMRRLAWAELYLTRVGYYAEDQEDPSEMVAALAARQKAAALEAYLITARLYF AAPDLTEKCTRLTRMAALEDSALETSVEITPAEGWAALQPLKAAAAERLGGSALSDLV CAFEPVRGRAETVRLIEVRVRERIALEARAKVEDSLTLLNAAAEEFQSLVTAMDVEIL TAEILELERVFGNAAANIRLVQNDQLKAEKTIAELEAVDLSALNQPGEMSEYQAAQGQ MVAMVALMDGVLTELAALAELLPDDGLAECRGLGSVYDGLDMNRDSFVLSSEIEGPYV ACLARAWALVEAGTSPSLETELMAELARHVGQISANLLEELQ" gene 225077..228910 /locus_tag="RTM1035_01090" CDS 225077..228910 /locus_tag="RTM1035_01090" /note="COG1196 Chromosome segregation ATPases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01090" /db_xref="CDD:48311" /translation="MIRHFSLILVLALAAALPGRVAEAQQCLDVSAEEAQLHAAELVT LLQIATFRGDLKYMSDVAPELESYLDSCGSDPGGRLAQVCGFDCHLQLARYRLFLASD LPFLSTAGVLSRDSTLLSPQSAQQHAEDGIAVAERGLKLLARQQGSAEADNAFRTYTR QLVGLSSVKIRLRMTVGDTWYQTMSEARVKSLGFAVSEALEVIPGAALEDQPNLHKAH TQYEFALWTLIETKTDIPAEQTYDDLRADLTILEGELQARMESLRRGMIFLNIDPVAF TTIPFEELQQALDRTKRDLEAVEARMEAIVREWSAASEGQATRAIDERRVVRGQKINL LAHQIGKLETEAQILTGEVQQEISALDAELDTFSRRQQIRNLEIALSTKIAEFENRRQ QLQERQALDLIAITKEAEIERRAELRWLLSFEMTRMNLDLQVSSLESQIGEYDRQLAR NRTQLETLVRQRAILETRIVDAQSSIEGAKQRIDRIDVTQVDVHALRRNVIREDICGV ENQLALIGETLDTPFAPALPGEEPCDVVSPSFTRVEYQDTMCGTDSEPGLRAKLNDAR IFGRAFILKCVIGDPVELAELEPMAEASTLIDSGLSLEDELGAVSCNGFSQTEVDFAK GIYDAEKALLEKQRVGLEQQRDKVNEQLDFVTGWASDFQNTILGLQTGLAVVQGAYAA LAGVPETTVAAAGMASGVYTTIKVDKPAYAVMEAARVALNTALAFGKINIQTESQVRA FATQLANIREANERIDFEKAVKALALHRAHFQLAGKRAEGLQAIKELELQGSMAAVDC DNAQLGIDEQVARLKAQHTRMLATMELQAEENALLDFDRLQQEGLIERYFNEIAILQL ELEKLALNEAQLTEDNAQLGALVGAAQGRIERIEMTRATVEGLAEESQQVTTVIDELR QRQADQQLAISNSELAFVEARIRGEEGNTEQLVNALEGSIELVGQRAELKTQIEQVQA DMLVQVAAQREEMVNLASEIDDPDERRQLFIASQETLSELLRGIPDYISAKRTSLTTA NRLLHLMRQRYSLVLGITGRREDYPLTYVKDAAQLTALVSEIEGQRFFDETEIPIEVA RVVVPSQSGFIKKLALDEEVTFEISPFAGSDDAMREAGFFVIWDEKFRERKTMTLIDV LIGAQYTCTGAQWNTYTLSHLGSGTVFRPLAEGSPVTVPERIIGPSRGGQHTFYNMAA NEADLNRVLSYWQFNRFAARKFPRMPGPPNDQDAILPFLGAPVYGTYKLAVNPSDCPF EGAVFTLLFLFASTP" gene 228907..230247 /locus_tag="RTM1035_01095" CDS 228907..230247 /locus_tag="RTM1035_01095" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01095" /translation="MSRFVSLTALAVLIAAPGAEARDTARNSIEGYVIERAVIRAPNC EGPAFDDVRIEAFEKGVCQFHQPARSAEQLDRVLKLLNRAQVQGLPVVHQQLAGFLTG LGHCATAERHLETFRGSGNADLTARDNFCAARMQSQAELNAIRWDFALFDYAEDLGVP NTLDTRLGEMASCYSGVLAPGFDAECGLITNITATELNVFVDEATDAVVQTYFTGVES PITAMFQRKRERAEGVLAMAGASIQGLKDGAAAVNAEYTAYHSAYETERDAKMTPIYE NYRESILRATAILDEFNRWKEGLFMTSDNVNLLPKIVERGVELTEELARVETDDYAAR AGKLVDDVRAVVQSEAEHRALIGQLCRVYFCELASRRRMIATQHVCRQPALTNNPICL NAQGQMKGGDLQVNFDGEQRIGVADFCRAAGIDDVFLTVGLSPATALTCMGQMP" gene 230256..232283 /locus_tag="RTM1035_01100" CDS 230256..232283 /locus_tag="RTM1035_01100" /note="COG3210 Large exoproteins involved in heme utilization or adhesion" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01100" /translation="MLLSLICLAAGAARAEEPALARYVTDDNVDVYVALFGGQAVELA GCASEGAVRALIEMPNDRPISDRTQVDLTDSAALGAHPSIPCNPPPLAEAAWPGSVPI WADLTANGRYLLAAPNGAGFYAVDAKCEAIKTALSIRERAQGAGFQGFGQPDPLELRL TINCGPGAEAQGPVVPDADSGAEGWTLHSAELFMSEAGLPDTLLVASAPMGEGRGYLP IRRLDGVEIAPLFLEGGARLEAAKAALRMLFAVPEEDVVSPLGFEELEAVQSALFADI CTRNCDGYDHSHGFFALPGIDVALSFEGVEQTPAALDILGRDLSGLRFADGRALWLQG CAAVASALGIVPGEGDWKSMARAAHLGAGQAAAMRCNAARAATCIRVIGPGLPLVPEV FHASGSCAGKARLIVHLPEAVTATAPLMIDAERGFAEVEIAPMPGLERAILTVPAGAS GAASPCLLSSPRVMIHSRGDLRLMLRDVTLRRRLEEVPQEAIGLHSDGGTLVTDGVIM VADGDAGLPPERGISLCSGAYYARATRVQAGTIAVQGSNSRLAISGAPGAPTTLGSAR YAISASAGAEMILSNVTLTGRVGASLFNATLDATNLRLVSTDAQSGSSTALQFRGASE AQLMQSTAQGFACVGTFWTAGSAAIFTLPGNNLTADNTRPSCGAGTVQILE" gene 232302..235097 /locus_tag="RTM1035_01105" CDS 232302..235097 /locus_tag="RTM1035_01105" /note="COG4886 Leucine-rich repeat (LRR) protein" /codon_start=1 /transl_table=11 /product="Rab family protein" /protein_id="jcventer:1101493006645_RTM1035_01105" /db_xref="CDD:34495" /translation="MTLRFLAPLFLVLALALPAKAQEVSVVLVTDILGDRLHYPVVIS EGRGYRVRCESQSDEETMIAALGFLIPSSQIIDPTDQSIVDAAPAENPLLCPSSENYP ITVFAANTSQGLIHYLQFKADIGSEAAHDRIYIPGCAALVEALNLDLANATPGDPTLF FAGRIHEIACRPGAAPIETAPQTFAAWCTKGDLTPEEEATMRAILNGTPGGPGALGNT VACRQAQDFLTAVTSRNLDNSGAQSLAPLATLSHLNSLSLAGNQISDVSPLAGLTALQ FLDLSDNRIANVAALATLVNLTSLDLGGNTISDLRPISSLPLLQQLSLPGNVPDTIAP LQFLTQLTELDLARNELTSDDIGVLVGLSQLTLLDLSNNEIDDFSELANFGSEVEFKL AGNPASTGGPTDFITFCVQLRDEPTQTGATIRAMIEVTGQSTCSGAATVLNSSNALTI TGKTLSELGPLATLSHLTSLNLADNTITDVSALAALTQIITLDLSNNAIIDVRPLAAL ERLTTLRMAGNPVTFGDYLSACILRNEPETLSEAHRTEVGALLSISQTQTCRSSESRL KTMSTINLRDRGLTTLDYIRVAESATNVLLDNNPVGEVSNLRFLQRLQFVDASNTGLE DDDSLINLRALRNLDISSNPIAELWALRNMPELQSVNFRDTQIRDIRVLDELPSLQTA TMWNAPVVMNSMLTYCLVHRFQIGMLGDARRTVDAIMAVAEGAGQSSQNCRGVNEWAR SVTSLNLNAKQISNVAPIAGMPELTSLLLYDNNIRDVQPMRQLRKLKTLNLSKNQLGT IPIVFSQDLEHLYVTENQIANPSAVSRYSKLKSLNLRKNRLTVTSGISGLPQLSFLDL RDNKIAQLNQITPLLSKNPYIKGNPVCGLQNTVPILVICQREPQFILNSNLVDPNVVI RRDFLQPVPIIITPSNP" gene 235170..241574 /locus_tag="RTM1035_01110" CDS 235170..241574 /locus_tag="RTM1035_01110" /note="COG3209 Rhs family protein" /codon_start=1 /transl_table=11 /product="integrins alpha chain" /protein_id="jcventer:1101493006645_RTM1035_01110" /db_xref="CDD:33022" /translation="MLAVLPVGGFAADDKSASSVIQLPSAGGTVSQEEGAFQLNANTG SANFSLPLPELPQRGKFGPGLFLSYNQFAGDSGSGLGVGWSFTASSVIVNQDFGTAIP GRKPDGDFFHRLSFQGARLVYLGEIDGLPSYRPEVAEEQMVFVRHDMPFEVVVLDRTG EQEVMTIPAGFELRMADGSRMYFSGAEGVAEGNFATAEPTITRWPLVMSVNTNRDAVR YEYEKHGERSYLTGVAFAGGQSRYDFDLIDTRASLVSHIAGVRQQNPKLYGKVTASFA GDVYDQWCMAFIGRSLNDNTEFTVRTHPDCQAMAESDLAGEIDPNSVNVLDQLRAVYR FGNTGGSALGDDTLRYPDLRFDYSSWTAAELAERELVFPAPNLAFAGDISPQNLELAD LNMDALLDVVQTSDTEVTRVHLGEGALESAFETSIPLKLTRTTASGLTREITPRLVEN RFHFADITGDTYADILEVEDGLLHVFNGNAVGDFPYIGRAIPLDGISPSLFSDGNGRF VDVNLDGLSDIVATRLDANGRTEALIYLNLTRRQPDGGHAINFARVSKVLPMDSQDGG LLSRQSTRLTDVNGDRLPDLVTINVADQGFCIYENQGNIFSREAGALLWGDMRLNDPK CGAGRFTAIRGMSPSDNVQSMWYVDANGDGVRDFASMGSRTDEIQIWLGFGDGSFADE SLRLSLNARVQVGNAPNSFRSRVADLDADGQAEIIVFQQASGPEIAPVVVIDFNRTTE IQLVKANLLTVVSFESGRRHDIRYATSTDEMLRDRAAGRETATLHFPVVVAKQMVTSE GVANAARRDVQVEEYFYHKPFYDVINRRFIGFSEVERVIYGDEFVGGADTQKSSIAFE QYYAFADVTADLHLAGKLRIRQTYAVDADPVLLAAAAGSASLDPNAAGLHSLSTATRA QKLPTPGAMLSCESNTWQTAPTGIANVSWLRKTEERLTAAAGPQHVQEPSDTECVNPV KTRIFAEFDEFNYAGRETETVVELTGPEGQVMPGYARVTETDYSEARATLAPLGIVNA ASARRTVAGTRLLSRERFAYLPENGGRLGMRAIDVFSSLADVPPEIADWHSATHTLLK NMAYDRFGNVVEMSDNLSKIESVTFDETGTLPTAHTKFHGSDDSRNQVTTMAYDDGIA GRLSGQTTPLGMEINYDYDALGRKLRELSADGSEKRYAYRFGLNGAPSMILTSLRRYP SAADTPEGESEFVRSLAAFNARGNQLAEMEDVAEGGVRMFKYSEFNRNELLTFRWTPY MTETVPDVEAAFASGQVPEPERRHGNAYRYDGLGRMIEETHPSGKFSTQSYAPWGMTT ITTYEYQHGGSMSVEEHRLVNDVGVHAVMIGDASGTSLVTRFDRDGFGYLTAIRLAGE EVPRQFRFNSVGDMEFQQIPGLGTHYYFYDERGRQWSKARIAEDGTTDVIAFEYDLLN RKLLETVNGEDRIRYAYDVTETLQVAAAFETPIPLPLGKHTRIEVIDPNGRHDSIQRF GWDANGRMVQNEIEIAGEVFAESFHQTLDGRINRATGPGGLGYDFALGPDRNLRRVAI THPDFSGPETVIEDITYNPESRIDQIAYRAGAVTELTYNRETLFLEEIVTRTGDGTAL QDISMTFNGNGSITEIVDRLAAGPAPAHGHVDRSGTFHYDFRNQLVRYLRYGEDAAFE YTDAGAFSRNDEMAAGETLVPPSDADTDLIPVGASAAPYSFDGFGQLAASPKVTATVF DAYGRLIRAQTLEHDVFFGYDQTGRRTYKDVVPLDDAGAAELYLFPTETFHRGPKGGE SFVNIGSTRLVRMEHGTGRWFYYLKDHLDSSDYVMTSAGVPVEQMLYRAYGTEHQPQI LSSDWASHEEAVADEKPREKTHHRFTGKYLDDATGLYYYGARYYDPALGRFISPDPLY LSDPERCVGNTIACTLFAYANNNPMSFIDPTGLEGIVQGDEAYRRQVEESLQRVDPTA RVDMETGEISQSWLHGLWLDIKSFFTGETNFDTGRELVSRIVEDPQTTTISFQANAAG GARADGQPFTSSTPGDINLVYDPSYLPALPEYDASTGTLSYETPDPGVVLGHELIHAT HGMRGDVGSAIVNYTGLDGSPQSAWHEEIRTTGVGGVNSPDDITENDLREMLGINPRN HY" gene 241636..242292 /locus_tag="RTM1035_01115" CDS 241636..242292 /locus_tag="RTM1035_01115" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006645_RTM1035_01115" /translation="MSRTSTKGRNWAAAALIGAAALGPSTGEMAMATPLAEPLDIPAE FLSEIDGAPDWLRGAMAGLGAPEGWSMTRDAIVVSEVEALRALNRIRAFRQAVRGGTG AIWLSLPVANEIGEIRDCVTPWATQLIPDLDANDFGQSFALSMLRTDEPEACLIDVGT DDPWAGSDRTALRGYFDDAGDLMVEHISLNEDAVFVRALIEAGYLVTKGSVSGRLRVE " gene complement(242446..243102) /locus_tag="RTM1035_01120" CDS complement(242446..243102) /locus_tag="RTM1035_01120" /note="COG4126 Hydantoin racemase" /codon_start=1 /transl_table=11 /product="HyuE hydantoin racemase" /protein_id="jcventer:1101493006645_RTM1035_01120" /db_xref="CDD:33883" /translation="MKLAYINPNATVGMTTGVVTAARKALPETDIFGLTNTSGPVAIQ GKADGDAAVPGLLSLLPVARAQGAQAIVIACFDDTGLNEARARAGCPVLGIGQASYVM AQLLGLRFSVITSMAISVPVIEENIREQGFAGICASVRASGLPVLTIDEGAPETIDRI AAEIETARLEDAATCAVLGCAGMAPLQGALAARTSLRLIDGVSASALLAKAVVSGFGP " gene complement(243099..>243873) /locus_tag="RTM1035_01125" CDS complement(243099..>243873) /locus_tag="RTM1035_01125" /note="COG1177 ABC-type spermidine/putrescine transport system, permease component II" /codon_start=2 /transl_table=11 /product="ABC spermidine/putrescine transporter, inner membrane subunit" /protein_id="jcventer:1101493006645_RTM1035_01125" /db_xref="CDD:31370" /translation="LYGPILTISILSFQGPQGGLTFPMNGASLHWFRDLFEQQAVGDI WGAFRRSLVLGLVVMVTTVVVSVMAGLAFRKRFVGSGLLFYATVTALVIPSILISLGV GLIFTQLGLKIHWATSGFGAQLTWTLPFGLLIMFAVFNRFDKSYEEAARDQGATAWQT LRYVVLPIIGPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIFGMTTNVTTPVIY ALGTLTTVFSFAIIAAFLMGAWIMGKRRARLGSDAGLGL" gene complement(244858..246129) /locus_tag="RTM1035_01140" CDS complement(244858..246129) /locus_tag="RTM1035_01140" /note="COG0687 Spermidine/putrescine-binding periplasmic protein" /codon_start=1 /transl_table=11 /product="ABC spermidine/putrescine transporter, periplasmic binding protein" /protein_id="jcventer:1101493006646_RTM1035_01140" /db_xref="CDD:31031" /translation="MAKPKVGYSRRALLKAGGAAFAASALPAPMLWAQDTKDIVLRQF GTGVSNLNDVANKVKEDLGFTLEMTALDSDSVTQRAATQPDSFDIADIEYWICKKVWP TGNLQAMDTARIANYDKIVGIFRSGKLTPTSTIAQGTAPHSVGFVDGPGSTSFASEET GWMTLIPTIYNADTLGIRPDLIGRPIESWTELLNPEFKGKASILDISSIGIMDMAMVC EAMGAVEYGDKGNMTRDEIDKTMAIFTEAKKNGQFRAFWKSFDESVNLMASGEVVIQS MWSPAITAVKSRGIPCVYQPLKEGYRSWGGGIGLSASLSGMELDAAYDYINWYLSGWV GGYLMRQGYYSAVPETSKNFMSENEWGYWFEGKPATDVITSPTGDTLAQAGEVRDGGS FNERMGAVACWNAVMDENQYMVRKWNEFIAA" gene complement(246179..247165) /locus_tag="RTM1035_01145" CDS complement(246179..247165) /locus_tag="RTM1035_01145" /note="COG3842 ABC-type spermidine/putrescine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC spermidine/putrescine transporter, ATPase subunit" /protein_id="jcventer:1101493006646_RTM1035_01145" /db_xref="CDD:33633" /translation="MGALMRTGYDLELVHLTKRYGDTVAVRDLNHVFVKGSYVCLLGP SGCGKSSTLRMIAGHEDVSEGAILLDGHDVSPLPPAQRGTAMMFQNYALFPHLSVREN VAFSLRMKGVNKATRHARANELLELVDMLNLADRLPAQLSGGQQQRVALARALITDPK VLLLDEPLSALDPFLRVRMRSELKKLQRALGITFLHVTHGQDEALALADEIVVMNDAV IEQAGPAREVWARPRTEFVARFIGGHNVLARPGGKVTVRADAVSLGKDGLPATVIAVE YQGASVSVTAATESGEEMLALLPEAQFFQSPKSPGEAVRLSWDEGRLHRLEA" gene 247406..248092 /locus_tag="RTM1035_01150" CDS 247406..248092 /locus_tag="RTM1035_01150" /note="COG1802 Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family protein" /protein_id="jcventer:1101493006646_RTM1035_01150" /db_xref="CDD:31987" /translation="MTKIEITTWTSDAVILDLERAIHEHRLPPGTKLGEDELGDAYGI SRTIVRAALLALSHRHLVELKRNRGAFVAQPSIREAREVFEARALLEPRTAHSAATRM TEMDLALLRTNICNEHAALDAGENGRALFLSGQFHIEIARIADQSTIETFISELISRS SLIIALYWRRRAALCETQAHHALLDAFANRDAALAEQLMKSHLLDLVASLDLRNVTQP PTSLREALQR" gene 248089..248922 /locus_tag="RTM1035_01155" CDS 248089..248922 /locus_tag="RTM1035_01155" /note="COG0454 Histone acetyltransferase HPA2 and related acetyltransferases" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="jcventer:1101493006646_RTM1035_01155" /db_xref="CDD:40669" /translation="MSDLSCRIATLPEVVQLLDWAAEEGWNPGIDDAAAFYAADPEGF FVAKVDGQPVAAISVVNHSDAHAFLGLYLCRPAFRHQGIGFALWQHAIAHAGTRPLGL DGVPAQEANYAKSGFALVDRTRRLTGTLPLQALTLPLSRPEDFPALARLDWAATGVCR QRFLRVWVDNIATRKTVLLREAAEITGFATARRCREGVKIGPIVAPDAMAALHLAGQA AAALAEPLTIIDVPDGSAAFGAVLRRNGFVEGFGTARMYRGTAPENGDALHAVATLEL G" gene complement(248919..249068) /locus_tag="RTM1035_01160" CDS complement(248919..249068) /locus_tag="RTM1035_01160" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01160" /translation="MILASPKKILYSHIYTKNTLSVQMQALVGLAVDTAALVVSFKST GFGAP" gene 249067..249525 /locus_tag="RTM1035_01165" CDS 249067..249525 /locus_tag="RTM1035_01165" /note="COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes" /codon_start=1 /transl_table=11 /product="hydrolase, NUDIX family protein" /protein_id="jcventer:1101493006646_RTM1035_01165" /db_xref="CDD:40389" /translation="MARAIYGTWIDLVCAFFKRPRRLQVAAVCYRETHGRKEVLLITS RGTGRWVIPKGWPIDGKDAPGAALQEAWEEAGVRSGCVSKEAVGLYCYEKELSTGLPV SVETLVFTIEVDQMDEDYPEAAERRLTWVSPGAAASMVQEPELQDILRKM" gene 249717..251099 /locus_tag="RTM1035_01170" CDS 249717..251099 /locus_tag="RTM1035_01170" /note="COG0306 Phosphate/sulphate permeases" /codon_start=1 /transl_table=11 /product="phosphate transporter family protein" /protein_id="jcventer:1101493006646_RTM1035_01170" /db_xref="CDD:41434" /translation="MVAPGIALAFIVVTALAAAVFFGEFPINFVVIAATVFGAYMALN IGANDVANNMGPAVGANALTLGGAITIAAIFETLGALLAGGDVVSTISSGIIDPVTVA DTQVFIWAMMAALISAALWINLATWIGAPVSTTHSVVGGVMGAGIAAAGLAAVNWSTM SAIAASWVISPVLGGVIAALFLALIKSRIIYREDKIAAARRWVPILIGIMVGAFATYL AMKGLKRVVKIDLGTAVTIGLMMGVISWLVTIPLIKRQSQGLENRNKSLKVLFGAPLV ISAALLSFAHGANDVANAVGPLAAIVHAAEFGSVTEQVSIPLWVMIVGAFGISFGLFL FGPKLIRMVGSQITKLNPMRAYCVALSAAFTVIVASWLGLPVSSTHIAVGGVFGVGFF REWDAERRLRNNKVAKPQELRIAPEERRRRKLVRRSHFMTIIAAWVITVPAASLVSAL VFLALNSLPA" gene 251122..251223 /locus_tag="RTM1035_01175" CDS 251122..251223 /locus_tag="RTM1035_01175" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01175" /translation="MLFTNRGFRNVEKDRALFLAAMIKDALADEPGH" gene complement(251238..252062) /locus_tag="RTM1035_01180" CDS complement(251238..252062) /locus_tag="RTM1035_01180" /note="COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="iron ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01180" /db_xref="CDD:31317" /translation="MLEAQDLSIGYGKSPIGTGLNLQVREGEILCLLGPNGCGKTTLF RTLLGLLPALSGSVLLGGRPITAQTRAEIARAIAYVPQAHAPPFPFEALEVVLMGRTA RLGAFAQPGKTDRAVAEDAMRHLGIHDLAHRDYSQLSGGQRQLVLIARALAQEATLIV MDEPTASLDFGNQAQVLARIGALAQIKGTASHGVILSTHDPDQAFALNARVLLMHRGG VLAEGPAAEVLTEANLTTVYGLPITVESTLSGRKVCLPRLAARTSATMMPDAMTSP" gene complement(252062..253015) /locus_tag="RTM1035_01185" CDS complement(252062..253015) /locus_tag="RTM1035_01185" /note="COG0609 ABC-type Fe3+-siderophore transport system, permease component" /codon_start=1 /transl_table=11 /product="transport system permease protein" /protein_id="jcventer:1101493006646_RTM1035_01185" /db_xref="CDD:41102" /translation="MVLVLLAFGAVMIGPYGLTTGQVLSALLGQGDQQAQIVVWNIRL PRVGAALLVGAALAAAGASYQALFRNPLVSPDILGVSAGAGLGAVAGIFLSLPVVMIQ ASAFVGGMVAVGLVTLVGSLVRGTDRTLTLVLLGVVVGALAGAATSLLKVMADPYDQL PAITFWLLGSLASITTRDIVPALPVVLIGLVPLALLRWRINVLSLGDEEARALGIEAG RTRLVVIASATLITASVTALAGVVGWVGLVIPHIARMLVGPGFGRLLPASAMIGAGYL LVVDTLARTIAAVEVPLGVLTAVIGAPFFVWLLARGRRGWL" gene complement(253069..254097) /locus_tag="RTM1035_01190" CDS complement(253069..254097) /locus_tag="RTM1035_01190" /note="COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="periplasmic binding protein" /protein_id="jcventer:1101493006646_RTM1035_01190" /db_xref="CDD:29750" /translation="MRYLLVILAVLALPAHARSVTDSAGRVVEVPDTVTSVFASGPPA SVLVYVLKPEALTGWPRALRPEERAYIAAPYRDIPETGRLTGRGGEANLERVLQIQPD LIVDFGSVRDTYIDLADRVQEQTGIPYLLIDGRFDNTPEALRILGHALGVPERGEMLA LDVEATFARIDAMLANVPEEDRPRVYLARGPEGLETGMKGSINTEIIERAGGRNVADD GGATRGLVNASMEQLIVANPDTIVTWDPNFYASVFDDPLWQGIDAVQRGRVYLSPTAP FGWIDRPPSLNRMMGLLWMAGLLYPDLWQGDLREDTRAFYALYYNVDLSDEDLERLLE WAEGRPPM" gene complement(254099..254386) /locus_tag="RTM1035_01195" CDS complement(254099..254386) /locus_tag="RTM1035_01195" /note="COG3039 Transposase and inactivated derivatives, IS5 family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01195" /translation="MRFIGRIPTLRFARKNGPRYRRHNLEPEWHVAREGREAYANIET LYGLDQSAGADHRLITLNDAPRGARRPAEDLLSPQGLAMLADSGFATANGG" gene 255021..256283 /locus_tag="RTM1035_01200" CDS 255021..256283 /locus_tag="RTM1035_01200" /note="COG3487 Uncharacterized iron-regulated protein" /codon_start=1 /transl_table=11 /product="lipoprotein, putative" /protein_id="jcventer:1101493006646_RTM1035_01200" /db_xref="CDD:33290" /translation="MIRNLLTTTAVIAALGGTALAQTPGDVLDTYADIAAANYTDSLT AAQALQTAVAALIQSPSAATLQAARAAWLAARVPYQQSEVFRFGNAIVDDWEGRVNAW PLDEGLIDYVDGAYGGATDQNQLAALNVIANPVFTLSGQEIDATEITPALLQETLHEA DGVEANVATGYHAIEFLLWGQDLNGHGDGAGDRPWTDYAQGADCTGGNCDRRAEYLAA ATKLLVGDLDWMTTQWADGGAARAALMADERAGLAAILTGMGSLSYGETAGERMRLGL MLNDPEEEHSCFADNTHNDHFYNGVGIRNVYLGSYTRTDGTSVSGPSLSGLVAEIAPT LDVEMRARLADAVLALGRIKTSAEAGFAYDEMLERGNAGGEALIMGGVEGLIAQTRSI ERVIAALDLGGIEIEGSDSLDDPSAVFQ" gene 256403..257428 /locus_tag="RTM1035_01205" CDS 256403..257428 /locus_tag="RTM1035_01205" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01205" /translation="MKTLSVTLAACAALGATAAQSQDANSPFSAEFSVELQTDFTVDS SAPGGEINNTFATIEGALSFAFTSRTSINSTLVLEQITAPTSDSFLEDHGLYAEELYF AHDFGAAQVVLGKFNPAFGLAWDAAPGIYGVDFAEDYQLTEKLGAGLVIPFAAGQGEH ALSLSFFNADRSILSESLGENRGRTNRSDGGVSNTSAPESVAISLTGAFGATGYNLGL QSQARGVGDAEDQTGIVGGLSHEFATGSFPVKLLAELAYFDHFDGTADSATFATFGAE ALVGPVTLSAVYAMRDVETLPKDHLATLSGEIEILEGLSGALAYRYGDEGGDETHTIG ALLAYEF" gene 257519..258994 /locus_tag="RTM1035_01210" CDS 257519..258994 /locus_tag="RTM1035_01210" /note="COG3488 Predicted thiol oxidoreductase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01210" /db_xref="CDD:33291" /translation="MTAAQSLEDIHLNVVPRTETERARVDAATALPTDFSKAWPFEQN GGGAQTVRSRDTADAFSQPAANLTFEQELEFRIGNGMFRRVWVSPPASTLASDGLGPL YNARSCQRCHLKDGRGHPPEGPGDSAVSMFLRISIPAPEASEIAAYIDGIHPTAPDPT YGTQLQDFSLPGHKPEYRLDVSYEEIELPLAGGEVAHLRAPTYRAADLGYGPLHANAM LSPRVAPQMIGMGLLEAIPSEDILALADPEDVDGDGISGRPQIVWSDVYDQPMLGRFG HKAGNPTLLEQTASAFAGDIGISNPIHPAGSGDCTDAQTDCRAAMHGGDAEQSGFEID QVGLDIVTFYSQTLAVPARRNLSDPEVLRGREVFYTTGCASCHRPNYVTHRLEGDNPA SFQLIWPYTDLLLHDMGPDLADNRPEGCANGQEWRTAPLWGIGMTKLVSGHTYFLHDG RARSLLEAVLWHGGEAQHARDTVVDMPPEERAALIKYLESL" gene 258991..259989 /locus_tag="RTM1035_01215" CDS 258991..259989 /locus_tag="RTM1035_01215" /note="COG3489 Predicted periplasmic lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01215" /db_xref="CDD:33292" /translation="MRLITTPVLSLSLVLCLAAPSLADVKSALDAHILPAFARFAESA DALAETASADCRPEAMAEAYHTAFDAWIAVSDLRIGPSETGALSVAFWPDGRGSTPRA LAQLIAEEDPVAFDPKAYAEVSIAARGLFALDMLMFDPEFSDYAPQSYGCTLAATIAA DLALQAHALEAAWSGPFADTLQSAGADGNAAFLTPDEALRAIYTQILTSLEFTADTRL GLPMGTFDQPRPLRAEARRSGRSLRNVVLAAEAAHGLASALADWPLPETQAALARLHV AAARITDPAFQDVTDPQARLRAEVLQQAVRGLRAAIEEEIGAQLGIAPGFNAQDGD" gene 259994..261064 /locus_tag="RTM1035_01220" CDS 259994..261064 /locus_tag="RTM1035_01220" /note="COG3490 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01220" /db_xref="CDD:47317" /translation="MATRRGFLIGLAAAGAAPRIGWAAVGSPAYLAAAREADGTFTLY GLSTDGIAKFRVPLPARGHAGAAHPIRAEAVAFARRPGQFALVIDCATGAVLHSLTPP ERRQFNGHGVFAAGGDLLFTSEQARDTSEGIIGIWDAAAGYARIGEFPSGGIGPHDLR LMPDGQTLVVANGGIATDPSDRTKLNISTMRPNLGYLTLSGTLVDRVEPSPDLQQNSI RHLAVRGDGLVAFAMQWEGQPGMAPPLVALHRRGQAPMLAEAPLADEIAMQGYAGSIA FCGDGSEVAITSPRGGRVHRFGIDGVFLGAVGRADVCGLAPRAGGYLASDGLGGLVAV APSGLIALARHDCAWDNHIIPL" gene 261114..261329 /locus_tag="RTM1035_01225" CDS 261114..261329 /locus_tag="RTM1035_01225" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01225" /translation="MLHFGWLKGTDAGKHPAGRRPFDVGATIRFISQSPDLFVFGRCA RSIYAPCAYDIFWMLGLKPECGLTFAF" gene complement(261367..263220) /locus_tag="RTM1035_01230" CDS complement(261367..263220) /locus_tag="RTM1035_01230" /note="COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains" /codon_start=1 /transl_table=11 /product="transcriptional regulatory protein" /protein_id="jcventer:1101493006646_RTM1035_01230" /db_xref="CDD:33622" /translation="MYEIPTTPDSLLDALAEAALVIDLVADRIVAANPRARALLDLED STGAPFSPLVGASLPGFIVLVDEIAHRGEAWSRDITLASITGRPLRVELRGRLVANAP SLLALTLLDLAEMERHDRIAQAAELHRSGLLEWRRAQEFFSELERQNQLILNAAGEGI YGVNADGKTTFLNRAAQEMLGWTAEDLLGHDIHSVIHHHHLNGDIYHAHDCPIYQSFR FEEVNRIEDEVFWRKDGKPIRVEYVSTPIYDQNVLAGAVVIFRDITERKESERKLREA MAEVAALRDRLEQENAYLQEAITTERAHHNIIGASSAVRQTVQRIDLVARTDATVFIS GETGTGKSLVATAIHKASPRARRPLIHFKCGSVAPEEVEAELWGQVRGAPNGATRDKP GKLELAHSGTLFLDDVEELPFEIQGKLLAALQNSAVTRLGDTREKPLDIRVIASTTLS DKQARRSHRIREDLYLFLNVFPITCQPLRDRQEDIPLLAAHLLKIACRRLNRPEPVLT EGVVQQLQSYDWPGNVRELHNVMERAAIVSQDRKLVVELGGVGPLAETGRSFRTEAQM QDLVRVNLIAALRETRGRIAGPSGAAALLGVKPTTLYSRIGSLNIVEADWT" gene 263429..264805 /locus_tag="RTM1035_01235" CDS 263429..264805 /locus_tag="RTM1035_01235" /note="COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="putative nitrate transporter component, nrtA" /protein_id="jcventer:1101493006646_RTM1035_01235" /db_xref="CDD:31059" /translation="MTMKSLGDPFSEKNDLRHGASCGCDTCNGAQHDVTARAMSSEAM LERAVESAVVRSVFGHSDIGRRSFMGMMGGGTVAAALASVFPLDAAKAAILDNLGAPE KTDLNIGFVPITCATPIIMAQPLGFYERYGLNASVIKTAGWAVARDKSLSGEYDASHM LTPMPLAMTLGAGSTAVPYIMPAVENINGQAIVLSNEHLDKRDPKQWKGFTFGVPFEY SMHNFLLRYYVAEHGLDPDVDIQIRVVPPPEMVANLRAGNLDGYLSPDPFNQRAVWEG IGFIHLLTKEIWEGHPCCAFAAPLSFATELPNTYGALLKSIFDATQYASNPENRIEIS EAIAPTNYLNQPVEVIQQVLTGTFADGLGAVQQVPDRIDFDPFPWHSMGVWILTQMKR WGYIENDIDYKAVAEQVYLAADAKKVMNDLGYDAPDITYKSHTIMGKTFDPAEPEAYV KSFAIGKG" gene 264809..265642 /locus_tag="RTM1035_01240" CDS 264809..265642 /locus_tag="RTM1035_01240" /note="COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="possible nitrate transport system permease protein" /protein_id="jcventer:1101493006646_RTM1035_01240" /db_xref="CDD:30945" /translation="MSTMSLNQRALLLSVVMLFVGLFLWEMSIPAQKAVGELTEYERL TGGGAQKAGVPPPSQVMAKAWEELSNPFYDAGPNDKGIGIQIGYSIYRVLSGYLMAAV VAIPLGFLIGMSPVAYKALNPFIQVLRPISPLAWMPLALFVIQDSEASAIFVIFICSI WPMLINTAFGVAGVRQDWVNVARTHELGHFKTAFTVILPAAAPTIVTGMRISIGIAWL VIVAAEMLVGGTGIGYYVWNEWNNLDLTSVIFSILMIGIVGMMLDAAFATLQRAVAYA E" gene 265654..266556 /locus_tag="RTM1035_01245" CDS 265654..266556 /locus_tag="RTM1035_01245" /note="COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="nitrate transport ATP-binding subunits C and D" /protein_id="jcventer:1101493006646_RTM1035_01245" /db_xref="CDD:31313" /translation="MNKPFLSIENLTQCYPDGQGGTTTVFENATFGVEKGEFVCILGH SGCGKSTIMNILAGLAEPTSGVVKMDGFEVSGPSLDRGVVFQNYSLLPWLSTLKNVSF GVAARHPDWSKAKVLDHSREYLAMVGLEGDVIHRKPSQLSGGMRQRVSIARAFANHPK LLLLDEPFGALDALTRGTIQDELLKIWGGTGQTVFMITHDIDEAILLADRILLMTNGP FARVAESVEITIPRPRNRTEIVEHPNYYPIRNHLVQFLGKRSKELAGQVSDGAAQTPE TVRIDHAPPEDETGEALRLRAVNL" gene 266584..267066 /locus_tag="RTM1035_01250" CDS 266584..267066 /locus_tag="RTM1035_01250" /note="COG1513 Cyanate lyase" /codon_start=1 /transl_table=11 /product="cyanate lyase" /protein_id="jcventer:1101493006646_RTM1035_01250" /db_xref="CDD:31702" /translation="MEDTMKDTVTMPALMTKEDVTTLILIAKKKTGMKWEEIAEGIGM SPVWTHSACMGMNTMPKAKAEALVALLDLPEEAVSVLEEYPTKIWEQAVPTDPCIYRL YEIVGVYGPTMKALIQEEFGDGIMSAIDFDMKITRVANPKGDRVKVEMSGKFLGYNSW " gene complement(267140..267505) /locus_tag="RTM1035_01255" CDS complement(267140..267505) /locus_tag="RTM1035_01255" /note="COG3450 Predicted enzyme of the cupin superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01255" /db_xref="CDD:45792" /translation="MIDLKTYQSLATQPIGAFAPKPTSLTPGQEEASVQLWASADGHT KIGVWECTPGHFTADRTAMGEYCHIISGRASVTNADGQGTRDIGPGDLLVLPQGWTGE WVIHEHMRKLYILSTSPTI" gene complement(267555..268376) /locus_tag="RTM1035_01260" CDS complement(267555..268376) /locus_tag="RTM1035_01260" /note="COG1177 ABC-type spermidine/putrescine transport system, permease component II" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_01260" /db_xref="CDD:31370" /translation="MRNWLNSPATDTQVTHGQRLWLYVFAVIVMILLVTPTLIVIPMS FSDSQYLEFPPEVWSTRWYDNFFGSSEWMQAARTSFQTAFLTMIVATPIGVLAAYGLH SSRFAFVRVAFVLMITPMMVPLVLVAIGAFYAYVKLNLLYTITGLVLAHTVLALPLVV IVTGSALKGYDMSQEQAARSLGAPRWKAFLTVTLPQIRFAVVTSALLAFLTSFDEVVV AMFISGGDNPTLTRNMFNALRDQIDPTIAAISTIMILVTTVMMVLVQVFGQDKKH" gene complement(268376..269266) /locus_tag="RTM1035_01265" CDS complement(268376..269266) /locus_tag="RTM1035_01265" /note="COG1176 ABC-type spermidine/putrescine transport system, permease component I" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_01265" /db_xref="CDD:31369" /translation="MSMQTAPLNAAGLRRDERLERLTLFGLSSPAILLILVVLVIPVG WLFYVSFIGANGQFSLENYERMISRRSYLRIFITTFQVSLLTTGLCILIGYPFAYFMS QLPSRLANLCLITVLLPFWTSLLVRTYAWLVLLQKQGLINNWAISLGLWDEPLKIVHN MTGTLIGMVHIMLPFLILPVYGAMKAIDRDYLKAAANLGASPRVAFWTVFFPLTAPGL FAGALMVFILCLGFFVTPAVLGGGKVIMVSMQIVSNIELFVNWGAASALGVVLLILTV AILWVASRFLNLDRMTGGGH" gene complement(269263..270351) /locus_tag="RTM1035_01270" CDS complement(269263..270351) /locus_tag="RTM1035_01270" /note="COG3842 ABC-type spermidine/putrescine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01270" /db_xref="CDD:33633" /translation="MTNTATEALPISVQNVTKTYGAVHALNDVSLEVKSGEFLTLLGP SGSGKTTLLMVLAGFTRPDCGSLKFGDREVIRTPPHLREVGMTFQSYALFPHMTVAGN VGYPLRLRKRPKAEIAERVERALETVQLGGYGNRRVDQLSGGQKQRVAVARAIVFEPR ILLMDEPLSALDKKLRDQMQIELRHLHEKLGMTTVYVTHDQREALTMSDRIAVVNHGR IMQLSTPRDLYEHPANRFVADFIGDSTFLTVNRLGADVTFGGVPLIHAGPLPDTPELQ LMIRPERIVLSSGGPREGANNFAATATDVVYQGDSYLLHARLDTGEMVALRGAVRGSN ATSLPQLGDRVTLTLAPEDTVLIDGSQT" gene complement(270426..271523) /locus_tag="RTM1035_01275" CDS complement(270426..271523) /locus_tag="RTM1035_01275" /note="COG0687 Spermidine/putrescine-binding periplasmic protein" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter, periplasmic substrate-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01275" /db_xref="CDD:31031" /translation="MIKIGTYCHFAAFQQEKNKMRKTFSLTVAATLLASGAVAQGTEI TIASWGGSYQDAQSKALFEPASAATGVTVKQETYGGMADVRLQVSTGQVTFDIVASGS GSAARAGAEGLLEPLDYNVIDVSNFYPNLYSEYCVGGDVFSTVYAWNTDTYGDNGPQS WADFFDAEKFPGSRAYRGSVAGALEPALMADGVPMDQVYEVLSSEEGIERALNKIREL RPNISVFWSSGAQHAQLMKDGEVDMTTGWNGRFDTAAADGAKVDYSFNQALLDYDCFA IPKGAPNKDAAMQFLAEISKPEYQDDLPKYITYGPTNKSAYDTGEISAEVAAGLPSSP ENAAMQLPISLEWYAKWETVAAEMYQEMLTE" gene complement(271562..272806) /locus_tag="RTM1035_01280" CDS complement(271562..272806) /locus_tag="RTM1035_01280" /note="COG0665 Glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01280" /db_xref="CDD:31009" /translation="MDPPRDADVLIVGSGYTGLSAAIATARGGRKTVVIDAEAAGFGC STRNGGQISTSVKPSLEKLTAKFGAQKARALRGEGERALKWIGEFIDQEGIACDFKRV GRFHAAHTPAHYEMLVRDAEQMHKGEGIESFAVPRAEQHREMGTDFYHGGVVFTKHCA LHPAKYHRGLLMAALNAGVEVVAHCPVGKIENTGSGFRVQTAKGEVRARDVIVATNGY TGALTPWMQRRVIPIGSYIIATEELPESLIDELFPTDRIASDTCKVLYYYRASPDRRR VLFGGRVSAAETDTSVSAPLLFESMTRIFPQLKDCAISHSWHGTVAYSFDELAHTGVH DGVHYAMGYCGSGVSMAGYLGMRTGQKVLGLAEGKTAFDDVPHPTRPLYTGKPWFLPA TVAWYRWMDKRQTRRAMVADPS" gene complement(273001..274479) /locus_tag="RTM1035_01285" CDS complement(273001..274479) /locus_tag="RTM1035_01285" /note="COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /codon_start=1 /transl_table=11 /product="transcriptional regulator, GntR family protein" /protein_id="jcventer:1101493006646_RTM1035_01285" /db_xref="CDD:31361" /translation="MKQAAGALLSAIHLDRSSRKGMSVQLYMALRDIILSGGLRAGDR LPATRTLARETGVSRTTVIDAVDRLVAEGMLVSQVGSGTFVSDTLEHQPSVPVLTTAS DTTAQQPRVSYAINHAEKSYAQRTWLPHEARAFVTALPALDAFPLAHWSRLSARHLRG ARGAVMGYGQPKGYEPLRRAITTHLSVLKGIQCHHEQIFITSGAQHAFALIGRLLLNP GDRVWMENPGASGARNALLSEGAELVPVDVDQDGLIVADGLAKAPHFRMAFVTPSHQQ PLGHVMSLARRFELLQAADAAQAVIVEDDYDGEFYYGNAPQPALRSTDTSGRVIYVGT FSKSLFPSLRLGFVLVPERMTEAFDRMFRFWASGPPTATQATVADFMDEGHFATHIRL MRRLYKARYEALMEESRILPDCITLQETASGFHTPAYLAPGIDAQAVVAQAAERGVVL APLSKYCLSPIDRSGLVFGFGSAAPEDIRRGMETLRTLPVLR" gene complement(274561..275661) /locus_tag="RTM1035_01290" CDS complement(274561..275661) /locus_tag="RTM1035_01290" /note="COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily" /codon_start=1 /transl_table=11 /product="mandelate racemase/muconate lactonizing enzyme family protein" /protein_id="jcventer:1101493006646_RTM1035_01290" /db_xref="CDD:48191" /translation="MRIARLETFCNEFVGFVRVTTDSGAQGWGQVSTYNADITCTIFH RQIAPHALGTDALDFADTLDLIYERELKYPGSYLRRAMTGLDTALWDMRGKLEGKPVA TLLGGSPGPVRAYASSMRRDITPEDEAERFCRLRDDKGFTAFKWRVGAEAGRDHDEWP GRTEAVVPTVSRALGDGIEKLVDGNSCYSPARAIEVGKLLQDNGIGHFEEPCPYWEYD QTAAVRAALLLDVAGGEQDCEYSSWQLMLDRGAVDIVQPDVMYMGGMHRTLQVCQMAA RAGLPVTPHAANLSLVTMCTMHLLRAIPNAGKYLEFSIEGPEYYPWQEGLFLGDPYRI EGGQAIVTDAPGWGVEISPTWLDSATYQVSER" gene complement(275771..276556) /locus_tag="RTM1035_01295" CDS complement(275771..276556) /locus_tag="RTM1035_01295" /note="COG2771 DNA-binding HTH domain-containing proteins" /codon_start=1 /transl_table=11 /product="DMSO reductase regulatory protein DorX" /protein_id="jcventer:1101493006646_RTM1035_01295" /db_xref="CDD:32632" /translation="MSDWFETSARAVSALGTPGFASALTTALRSIVPYEFTVIFAYYR DHKPLDLYDDFPAAKRKVMVDDYQEGPYLLDPFYLNAAAPTLPRLARLRDLAPDRFYQ AEYFRNYYIQTGLAEEIGFILNIGDEVGVVISAMREHKVFSAREFRDLEAAFPFVAAI AQKQWGGLITQFSARPETDGPRLPQLIEDAFQSLGRNLLTPREAEVVEYVLKGHSADA TGRALGISPGTVRIHRRNIYAKLRVSSQGELFSSFIAALSELA" gene 276673..277857 /locus_tag="RTM1035_01300" CDS 276673..277857 /locus_tag="RTM1035_01300" /note="COG3842 ABC-type spermidine/putrescine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC permidine/putrescine transporter, ATPase subunit" /protein_id="jcventer:1101493006646_RTM1035_01300" /db_xref="CDD:33633" /translation="MLDANAEAGIRMGASREQGTHSTQGHPSDEDCVAEFVGATKRFG AVLAADRINLRIRRGEFLSFLGPSGCGKTTALRMLAGFESPSDGTVRIDGQDVSRVPA YARPVNMVFQHYALFPHMTVAQNIGYGLRQVRPKLAKSEIAARVDAALAKVRLDAFGA RRTWELSGGQQQRVALARAIINEPKLLLLDEPMAALDAKLRGEMQRELLDLQRSLGIT FVLVTHDQEEALSMSDRICIMGAGRIAQVGTPQDLYDRPRNRYVADFVGKANILKGEV LSREAGLARIALAGGAQVLVPNTAGDTRRHVEIAVRPEALRLAVPGEAPGEDAMLRAR ITHRTFLGDHTEYLMQADDIGPLQVNVPRQAERALGGQGVGDPVHILWTAGTGLVLAA DE" gene 277854..279053 /locus_tag="RTM1035_01305" CDS 277854..279053 /locus_tag="RTM1035_01305" /note="COG0687 Spermidine/putrescine-binding periplasmic protein" /codon_start=1 /transl_table=11 /product="ABC permidine/putrescine transporter, periplasmic substrate-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01305" /db_xref="CDD:31031" /translation="MTDNNCTTFNKGNETMTQDNTPISRKKFIEELRRYEKGSISRRQ FLGTTGLGTAMAVLGGALPGLLPGRAMAQDLGDRVVLATWPNYHDAANFDLFATETGV FSQVNVFGSNEEMLAKIQAGGSGWDVFVPTNYAISTYVEAGLIEPLDLSKLPNYDPAA FDARFADAGTIDGKVYAVPKNWGTTGIASNTAKTGGVVDSWKTFFDGAKDQFDGRVMV HDYQLTTIGNALAYFGYSFNSVDPAELAEAEKLLIEVKPHLFAISSDYQPAMRNGDAW LTMCWTGDGKQLNTDLPEIAFALGKEGGEIWSDYYAIPVGAPHREAAYALIDYLLAPE VNAREALAHGYPVADARTNALLPEELLNDPILYPAAEALNALEFGAAVTLTDPNRAEL MARFKSA" gene 279071..279928 /locus_tag="RTM1035_01310" CDS 279071..279928 /locus_tag="RTM1035_01310" /note="COG1176 ABC-type spermidine/putrescine transport system, permease component I" /codon_start=1 /transl_table=11 /product="ABC permidine/putrescine transporter, inner membrane subunit" /protein_id="jcventer:1101493006646_RTM1035_01310" /db_xref="CDD:31369" /translation="MAMTRTRARALLLMPAGIWYGVLLLFPLAVVLVFSFGERNPIGG YAPGFTLEQYANLPARFAAFRNTLTLAPLGTLAALFIAYPLAYYLALKVSARWKTTLL ILVIVPFWTSILIRSYAWIYLLGGNGIPALLEAVGLGDIRLINTPFAVLVGIVYGYLP LMVFPIYVALEKLDRSLLEAAADLGTPPWRSFLQITLPLSMPGVLTGSMLVFILLTGE FLIPAILGGGKVFFVGNALVDLFLQSRNWAFGSAVAVALIVIMLIVVALYSRAVRRFG AGRDDIGLM" gene 279936..280742 /locus_tag="RTM1035_01315" CDS 279936..280742 /locus_tag="RTM1035_01315" /note="COG1177 ABC-type spermidine/putrescine transport system, permease component II" /codon_start=1 /transl_table=11 /product="ABC permidine/putrescine transporter, inner membrane subunit" /protein_id="jcventer:1101493006646_RTM1035_01315" /db_xref="CDD:31370" /translation="MRAYAIAVFAFLYLPIGIIALFSFSAGLSASSMQGFSTEWYGRA LSNPFVMEALWTSIKVAFLSAVLATVMGTMAALALTGMRGRLRVFFDTLVQVAVMIPG IVIGIATLIALVTVFDLINPWLEAMSGRRLSLGMGSLIGLHGMFTMSLVILLVRGRLE SFDRAQIEASGDLGAGPVATFVQVTLPQIAPAILAGFLLAFTFSFDDFIMAFFVAGSE TTLPIYIFSSIRRGVTPEINAIGTMVMVASLTLLIIAQVLLRPGAPRAGR" gene 280747..281517 /locus_tag="RTM1035_01320" CDS 280747..281517 /locus_tag="RTM1035_01320" /note="COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="Putative short-chain dehydrogenase/reductase" /protein_id="jcventer:1101493006646_RTM1035_01320" /db_xref="CDD:40206" /translation="MQEARMLKDRIALVTAAGSGIGRAGAVAMAREGAVVIVTDLDGG LAQETLAQIEAAGGRGAAFALDVTEDAACAAMVAQVVADWGRIDVLHSHAGIQIPGRA EDVTPAQMDAAWALNVRAHFVLSRAVIAPMRAQGGGSVIVTASNSGCQYDRGMVSYAT TKHAAVAMVKQMAVDYAAENIRFNALCPGFVDTPFNAGFETQMGGRKALESYVAGSIP MGRWASVEEIAHGIVYLASDRSSFVTGLALVIDGGEML" gene 281605..281907 /locus_tag="RTM1035_01325" CDS 281605..281907 /locus_tag="RTM1035_01325" /note="COG4991 Uncharacterized protein with a bacterial SH3 domain homologue" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01325" /db_xref="CDD:34596" /translation="MRRALIIVLVSLLSGSLLGAAPATAASLGRFEVHGVEGDDMLKM RAGPGIGYDVIVGLPNGTVLRVHSCQQTGGTRWCEVSLERARGLRGHVSWAYLRKL" gene 281904..282485 /locus_tag="RTM1035_01330" CDS 281904..282485 /locus_tag="RTM1035_01330" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01330" /translation="MRSALPIVLALLLCLGFAVSGARAADVAPPPAGLLWNKTGLPAV FPLQVKTLPGRDHVVTLIDAETGEEALAAYIRGGAFFRVLVPPGVYRLRFASGKHWQG EALFFGEGPDTEVFELRRVLRFETRGLGTKAGHIVDLRGRGTEAQITEQRICQSFRPD FPRPIIRPREDRRAVGPDYEVPQRRDVRSRYCG" gene complement(282711..283796) /locus_tag="RTM1035_01335" CDS complement(282711..283796) /locus_tag="RTM1035_01335" /note="COG3448 CBS-domain-containing membrane protein" /codon_start=1 /transl_table=11 /product="CBS-domain-containing membrane protein" /protein_id="jcventer:1101493006646_RTM1035_01335" /db_xref="CDD:33251" /translation="MRAGVGALISLGLTGLFLLSPQIDLDLGLFLVAPFGASAVLLFA VPNSPLAQPWSAIVGNTVGALVGVAVCLVVGDIALRIALAVGLAITATILCRALHPPA GAVAMTAAMSPEAIEHLGFWFALAPIAIGTTALVVLATGYARLTGRHYPFRQFDDPSN HRTEDRNPTERLGLSEGELTSILERFSQSFNLGVEDLARLIGAAELQAAAHSAGPLTA QDIMSRNLVTANPDTTLGEIADIFRKHRFTSLPVVGPDTKFLGVIFQMHLISQAREDA LRLHRGFLPSFKRLLDRDRAGPMTASDIMSVAVPRVTTNTPIGALLPIMADGDTDAVP VIEYGKIVGIVTRTDLIAALARRAARS" gene 284004..284957 /locus_tag="RTM1035_01340" CDS 284004..284957 /locus_tag="RTM1035_01340" /note="COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="possible transporter, RarD family, DMT superfamily protein" /protein_id="jcventer:1101493006646_RTM1035_01340" /db_xref="CDD:32782" /translation="MAMTNTSSASPSTDRILAGVALMLGFCVTAPLLDVAAKLASTSV PVGQITAARFIVQCALMTPFVLIMGLSLRVPRAHWLALLFRAVLLFVSTFCFIAAIRV MPLADALAIVFVAPFIVLLVGKFYLGEDVGPRRVGAAMVGFVGVLLVIQPSFAAFGAV ALFPLGTAVGFAFYILVTRGLSRRMHPVTLQFHTGLIASLLCLPVVILAEGTGIEMLD PVWPEGIAWLWLLGVGFFATLSHMMMTYALSLAPSATLAPLQYLELPVATLLGYLVFR DFPNALTLTGIAIIIGSGLYMIHRERVTARQLMTERAAPPI" gene 285286..285357 /locus_tag="RTM1035_01345" CDS 285286..285357 /locus_tag="RTM1035_01345" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01345" /translation="MFRLKSERTSILKLAVFLINLHL" gene 285661..286854 /locus_tag="RTM1035_01350" CDS 285661..286854 /locus_tag="RTM1035_01350" /note="COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component" /codon_start=1 /transl_table=11 /product="ABC transporter, substrate binding protein" /protein_id="jcventer:1101493006646_RTM1035_01350" /db_xref="CDD:31027" /translation="MGSALSAPALLSTLSRAAAQGSDIPVGLLFSLTGAVAVVESTLH DAALMAIEEINAAGGVHGMQLRPIIEDPASDPATYADRARRLMIRDKCVSVFGSYTSA SRQAVLPVTEQRNNLYWYPTLYEGRECSRNVMYGGAVPNQQQDDLIPWAIENFGPRFY MIGNNYVYPKEENNYCKTLLAKHGGEVVHEEYVPLGHSDFSSVINRIRAEEPDVIFAT VVGDSDVAFARQYHAAELDPAKMPVISLTRSEVEVKAIGGEAAAGHFSSAPYFMGTQT PENERFVEAYKSRYGGDQVTHFVSEAAYFQVYQFKAALEKLDPSNITPEAIRDAAVGL ALTAPQGEVLIDENLHTHLWPKIGQWQANGQAEVVVQSQSRVAPLPYAAYEGQRCTGQ GLVEG" gene 286940..287809 /locus_tag="RTM1035_01355" CDS 286940..287809 /locus_tag="RTM1035_01355" /note="COG0559 Branched-chain amino acid ABC-type transport system, permease components" /codon_start=1 /transl_table=11 /product="Branched-chain amino acid ABC-type transport system, permease component" /protein_id="jcventer:1101493006646_RTM1035_01355" /db_xref="CDD:30905" /translation="MDVILNQLFAGLSMASILLMIALGLAIIYGAMGVINLAHGEFVM LGAYAAWALQSYAGFSIIVALPFVFIAVAAVGWIIEKVIVQRLYHRPLDTILATWGIG IILQQLVRLSVGAESRFVKGPEILSGNTQIGGLIMSNYRLFVIVFSLSVLAASWALMT KTEFGMKLRAVIQNRKISECYGIEAKNIYSFTFAYGAGLAGIAGALITPLFSTIPTMG TGLVVDAFLVVIVGGLGSLLGAATASVLIGEATALFSMLFNDTLGRIAVLAGIIVLIR FRPRGLFPSNTRR" gene 287820..288932 /locus_tag="RTM1035_01360" CDS 287820..288932 /locus_tag="RTM1035_01360" /note="COG4177 ABC-type branched-chain amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter, membrane spanning protein" /protein_id="jcventer:1101493006646_RTM1035_01360" /db_xref="CDD:33917" /translation="MTTRLYYDLAALVLFALVIVLGVPALMGFDGFELNTFARYLALA IVSLALALSWGSAGLLNLGQAATFGMGSYAMAMHLKLKASGEALPDFMGWNNVPELPL LWAPFHSLGFTLLAGLLVPAFVGGLIAIFMFRARIAGVFVAIITLAFLVAFQLVVIEQ QGITGGQNGLTGLAPLSLMGWTVDTYGVGFYYLVAGCLMAAVTFGLYLTHSKFGLILR AIREDADRTRFFGYNVANYQTVIFCISAALAGWSGMLYTLVLEFASPTYMSVSFSLAI VIWCAVGGRDSVIAAAIGAIIVNLLEGRLSDVFVEGWNLMLGVIFVLVVMFMPRGLHG VISDLWQGLCQGMRKDRTPSSTPNRGAQPVKSGQER" gene 288965..289663 /locus_tag="RTM1035_01365" CDS 288965..289663 /locus_tag="RTM1035_01365" /note="COG4674 Uncharacterized ABC-type transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter, nucleotide binding/ATPase protein" /protein_id="jcventer:1101493006646_RTM1035_01365" /db_xref="CDD:34291" /translation="MDFGGLRAVDGLSFDVAQGEILCLLGPNGAGKSTTLDLICGKTQ PTGGSIRFEGTEISQMLEFRRARLGIGRKFQVPSVYKELTVAENLSVARSRRPGIWHA LTRFALSDGHAAAPILERVGLEAKANDLAGNLSHGETQWLEIAMLIAQDSRLILMDEP TAGMTIQETERTAEIFRVLSDSHTLIVVEHDMSFVRTVADRIVVMNRGAMLAQGTIQE IETNEDVKTAYLGH" gene 289666..290367 /locus_tag="RTM1035_01370" CDS 289666..290367 /locus_tag="RTM1035_01370" /note="COG0410 ABC-type branched-chain amino acid transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter, nucleotide binding/ATPase protein" /protein_id="jcventer:1101493006646_RTM1035_01370" /db_xref="CDD:30759" /translation="METMQAKDLYSFYGKSPVIQGVSFDLEPGEFLAILGRNGVGKTT LLKSIMGLTDRCDGGLIFGEQDLLSRSTSQRAKLGIAYIPQGREIIPNFTVRENIVMG TFARPDGKREIPDYLFEMFPILDEFIGRKGGDLSGGQQQQLAIARALAMDPKILILDE PTEGIQPNIVKQIEDAIIRLNRERGLGIILVEQNVPFARRASDRFMVLDKGRVVLSGL SKDLTDSVVEKHLTF" gene 290413..291456 /locus_tag="RTM1035_01375" CDS 290413..291456 /locus_tag="RTM1035_01375" /note="COG0388 Predicted amidohydrolase" /codon_start=1 /transl_table=11 /product="aliphatic amidase" /protein_id="jcventer:1101493006646_RTM1035_01375" /db_xref="CDD:30737" /translation="MRHGDISSSDTTVGVAVVNYKMPRLHTKAEVLENAHKIADMIVG MKRGLPGMDLVIFPEYSTQGIMYDPDEMMETAATIPGEETEIFAAACRKANTWGVFSI TGERHEDHPKKTPYNTLILMNNKGEIVQKYRKVLPWNPIEGWYPGDKTYVCDGPKGLK VSLIICDDGNYPEIWRDCAMKGAELIVRCQGYMYPAKDQQVIMAKAMAWANNTYVAVA NAAGFDGVYCYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSIPEIRDARANDQSQNHL FKLLHRGYTGIHASGDGDKGVAECPFEFYRNWVNDAEKTREQVESFTRTTVGVACCPV GGLPTGAKEKEAN" gene 291531..292658 /locus_tag="RTM1035_01380" CDS 291531..292658 /locus_tag="RTM1035_01380" /note="COG0542 ATPases with chaperone activity, ATP-binding subunit" /codon_start=1 /transl_table=11 /product="probable chaperone" /protein_id="jcventer:1101493006646_RTM1035_01380" /db_xref="CDD:30888" /translation="MPFLTDRLHDTARQQKLASALADENARMTGASSTKGTTPNAGLQ TRFTFDLDQVEAELRAAIIGQDESLEQLLEILKVVRADIGDPRKPLATILFCGPTGVG KTETVRTLARALYGDADAFCRIDMNTLSQEHYAAALTGAPPGYVGSKEGTTILDQEKI EGTRNLPGLVLFDELEKASNEVVLALMNVFDNGLLTVASGERTYSFRNALVFMSSNLG ARELMALDENSGNLWQRIRNSGKSRRERAHDIVMNSLLDRFPPELVNRIDHVDTFNWI SRDKMPALVDVEMARLNRRLRKHDLSLSISTTLRDFLSVEGYDKRFGARGLRRAIRRK LEFPLAGFLLDGPAPDAPASGQAMTLVFADHKDGQVQFQYS" gene 292675..293844 /locus_tag="RTM1035_01385" CDS 292675..293844 /locus_tag="RTM1035_01385" /note="COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="jcventer:1101493006646_RTM1035_01385" /db_xref="CDD:31027" /translation="MTQKESWKIGLLFSTTGVTSIIEQSQLNGALLALDQINARGGVR GRPLEAVSYDPGSIVTQYGELAERLIVDDKVSVIFGCYMSSSRKEVLPVVERRNALFF YPTLYEGFEYSPNVIYGGACPNQNSVPLANYLMSAYGKRIFFVGSNYIYPYESNRVMR NVLRQGGGEVVGERYFDLETRAEGFRAVLDEIRDAQPDAIFSTIVGQSCIEFYRAYHA VGGDGRVCPIASLTTNEGEISAIGAEAAVGHITAAPYFRSISSLANRRFLKAYEQKFG STIDVTSCCEAAYSQVHLFAAALEETGEMDTDCLREALLGEAFDAPQGQIKVDPDNNH TYLQSRIAVVNSEGEFEIDLKVRRAIKPDPYLVYPAIHDWSFRTHKVTTSGGRHA" gene complement(293858..293953) /locus_tag="RTM1035_01390" CDS complement(293858..293953) /locus_tag="RTM1035_01390" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01390" /translation="MFETTADPVYLLQKLICATVTRMHQENVLIP" gene 293954..294436 /locus_tag="RTM1035_01395" CDS 293954..294436 /locus_tag="RTM1035_01395" /note="COG3707 Response regulator with putative antiterminator output domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="jcventer:1101493006646_RTM1035_01395" /db_xref="CDD:33502" /translation="MWPLPRTLPDKFDMVFVDVTDQSPQELKAFLDRRERPITTIAIV GYENPSTLDVILEIGAHSVLMKPVRAAGVLSSMLMARRFQSEQVRYEKDLSKLREKLE NVQKVNDAKFILMRHRGITEREAYDLIRKQAMAKRTTTTEIAQSIINAESILSNMGDT " gene complement(295145..297022) /gene="cpdB" /locus_tag="RTM1035_01400" CDS complement(295145..297022) /gene="cpdB" /locus_tag="RTM1035_01400" /EC_number="3.1.4.16" /note="COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases" /codon_start=1 /transl_table=11 /product="bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein" /protein_id="jcventer:1101493006646_RTM1035_01400" /db_xref="CDD:31080" /translation="MQTTDVHGNLLPFDYYTNQPDRPWGLARLATQIKRARSEVGAEN CLVLDNGDFLQGTPLTDLTAQPDNGWTGPHPILAAMNDIGYDAGTLGNHEFNFGLDWL MDTLAQARFPLTCCNVLTRRGGTPVDDTTLLPPYLLLNKQMQDRDGGSHSLRIGLLGL VPPQILTWDHARLSGRIDVRDMVESARAWVPTLRALGADLVLLLAHTGIDPGPDRPFM ENAARALARLPGIDALLAGHSHKSFPSTDHNGIAGANASNGTLHDTPCLMAGFRGNHL GQLDLTLTHDGNAWQVTGHDSRLLAVSSAQPCPAICIAADAAHRHTLALTAREIGQTA APLHSYLTLLRDDPILHLVNDAQRRALTLALANSPHAGLPLLSASAPFKTGGRGGPAH FTDIPKGPLLLRHIADLYSFPNTLCGLLVTGADLRDWLERAAICFNQINPGLPDQPLL DPSVPGYDFDVIDGLSYTIDLSQPARYDLSGALIHPKAARIQDLCFARKPVRPDTPFI IATNSYRAHGGGPFAPLAERGLIYSGTRTVRDLLADHVAAVGQVVPAPRPTWRFAPQP GTRVTIETGPGLRAHPADIAALDAVDLGLTDAGFLRLGMPLPFAQPTLAHPAAAAYIT R" gene 297323..298294 /locus_tag="RTM1035_01405" CDS 297323..298294 /locus_tag="RTM1035_01405" /note="COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding" /codon_start=1 /transl_table=11 /product="hydrolase, NUDIX family protein" /protein_id="jcventer:1101493006646_RTM1035_01405" /db_xref="CDD:32645" /translation="MRTSEQVTFGGSGLDRADELRSDEGLLQAAMTEGRARSIVLWRG KPLLRAETLDELVILAPDHPVLTRYKVPPILLGRDDSGDLILAHDISAWVPPGLEPDQ LDSFLDASEQVHPDLPEESAFAELRRVMTRLSPRDAELAATAKAVFGWHLTHRFCARC GKESRMIRAGWQRACDHCGGQHFPRTDPVVIMLITRGNSVLMGRSPGWPEGMYSLLAG FIEPGETIEAAVRREVWEEAGIKVGRVSYLASQPWPFPASLMFGCRGEALSEDITIDP QEIEDALWMSREEILSAFAGEHPFLMPARKGAIAQFLLENWLADCLD" gene 298349..298816 /locus_tag="RTM1035_01410" CDS 298349..298816 /locus_tag="RTM1035_01410" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01410" /translation="MQFTGKEDIEAPIERVFEEITDFQGFERSALRRGADVRRTDKLK VPGVGMSWHAVFKLRGKQRKVDVTVAEYDPPNGIKLGVISPAIEGQMVVELVALSRGR TRMTVTLVLQPRTLAARLMMQSLRLARNNLTKRFKVRLAEYAAEVEDRYTRSL" gene complement(298832..299674) /locus_tag="RTM1035_01415" CDS complement(298832..299674) /locus_tag="RTM1035_01415" /EC_number="4.2.5.1" /note="COG0077 Prephenate dehydratase" /codon_start=1 /transl_table=11 /product="prephenate dehydratase" /protein_id="jcventer:1101493006646_RTM1035_01415" /db_xref="CDD:30426" /translation="MTDRIAFQGELGAYSHQACRETYPEMEALPCRTFEDAISAVREG QAELAMLPVENSTFGRVADIHHLLPESGLHIVGEAFVRVHINLLALPGIRLDEIESAM SHTMLLGQCRAFLERHGIHRVTGADTAGSARHVAEAGQPEMAALASELAGEIYGLDVI ARHIEDQGNNTTRFLVMAREPDFAARGENGMMTTFVFQVRNIPAALYKAMGGFATNGV NMTKLESYMVGGSFTATQFYADIEGHPDDPAVARALDELDYFTSNVTILGVYPADPRR HDTD" gene 299794..300972 /locus_tag="RTM1035_01420" CDS 299794..300972 /locus_tag="RTM1035_01420" /note="COG3474 Cytochrome c2" /codon_start=1 /transl_table=11 /product="Cytochrome cy" /protein_id="jcventer:1101493006646_RTM1035_01420" /db_xref="CDD:33277" /translation="MFDTMTMTKTAGALCGALLVFLLGNWAAESIYSVGGGHGEDHAQ GYVIDTGADEAEEVVDEGPSIAELMASADPANGEGLFRNCAACHAVVDGENKVGPHLY GVVGREVGGVADYGSYSGALTAVAQVWTPVELDAFLENPKGYAPGTSMGYAGMRKAED RADLIAYLDQTDGTTFEMPVEESAAEPAAEDAAAEPAAEEAAAEPAAEESAAEPAAEE AAAEPAAEEAAEPAAEEAAAEPAAEEAAAEPAAEEAAVEPAAEEAAAEPAAEEAAAEP AADAGASDFAALVAAADIAEGEKLYRRCGACHKLEDGKNGAGPHLFGIVGRDIANVEG FAYSDALKGLEGTWTPEKLSDWIENPRAFAPGNRMGFPGLKDEADRANLIGYLQSAAN " gene 301110..303065 /locus_tag="RTM1035_01425" CDS 301110..303065 /locus_tag="RTM1035_01425" /note="COG4166 ABC-type oligopeptide transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="extracellular solute-binding protein, family 5" /protein_id="jcventer:1101493006646_RTM1035_01425" /db_xref="CDD:33908" /translation="MRQEEDGMTVRNTLTKTRTFASLVPWRLRVTMIGFSIATLMAQA VLAQDEVISSHGYSFYGDLKYPADYAHFDYVNPEAPKGGEISLFAPGTFDSMNPYARQ GRAGRLSWMVYESLLGASEASGEPLPGDSYNEGYGLLAERLEYDAGKTWVIFHMRPEA KFADGTPVTAHDVVFSHNLFLEQGLKSYADAVKRRVLSAEALDDHTVKFTFAEGISRR SLIDQVGGTPVFPRKWYEDTGARLDEPRLEAAPGSGPYQVKSYDVNRNIVYERNPEYW GWHLPINKGRHNFDRIRIEYFADDNAAFEAFKAGIYTFRPEGNSKTWATGYDFPAANA GYVVKAELPDGLPPTPSGFVFNLGREKLQDKRVRQAIALGFNFEWTNSSLQYDLFKQR HSFVQDTPLEAKGAPEGAELALLQSLGDIVPEEMLTATAVMAHTSDGERLNDRRNLRA AMKLLDEAGWAVGGDGKRRNAAGEVLKIEIPISASGSATMSAVVESFVSNLQLMGIEA KFDKIDAAQYTARERDRDYDLIFDSYVAFLEAGTGLHQRYGSKEAAFSLFNPAGLASP MIDAIIDRALESASKEEQDVALTALDRALRYEFFMIPTWYLDKSWVAYWDMYAYPDPL PPYATGVLDFWWYDADKAQALKDAGAL" gene 303084..304178 /locus_tag="RTM1035_01430" CDS 303084..304178 /locus_tag="RTM1035_01430" /note="COG4174 ABC-type uncharacterized transport system, permease component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="jcventer:1101493006646_RTM1035_01430" /db_xref="CDD:33914" /translation="MGAYILRRLLLIVPTLFGIMVINFALVQFVPGGPVEQMIANMQG QGNVFESFSGSGSDTGQEMVGAAGGNDQYLGARGLPPELIKELEEQFGLDKPPLERFF NMMWNYMRFDFGESYFRKIEVLDLVLEKMPVSITLGLWSTLIAYIVSIPLGVAKAVRD GTKFDTWTSGVIIVAYAIPAFLFAIMLLVLFAGGSYFQIFPLRGLTSDNFEQLSLLGK IGDYLWHIALPVLASTISAFATLTLLTKNSFLDEIKKHYVMTARAKGLSERKVLYGHV FRNAMLIVIAGFPAVFIGVFFGGSVLIETIFSLDGLGRLGFEAAVGRDYPVMFGTLFL FGLIGLVVGILSDLMYVLVDPRIDFEKREG" gene 304183..305292 /locus_tag="RTM1035_01435" CDS 304183..305292 /locus_tag="RTM1035_01435" /note="COG4239 ABC-type uncharacterized transport system, permease component" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide uptake family ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_01435" /db_xref="CDD:33962" /translation="MIRLSPLNQRRWRNFRRNNRAYWSLILFSVIFTITLFAEFVAND KPILVQYRGELYMPIFRFYPETEFGGDFETEAIYRDPEVRCLIASGGLDICFDDPEGV IADAEDGVVEGEEIAKGWAIWPPIPYSYNTTVDRPGAAPLPPNGQNLLGTDDTKRDVL ARVIYGFRLSVLFTLIVTALSSVIGIAAGAVQGYFGGRTDLIFQRIIEIWASTPQLYV IIILFAILPRSFWLLVVITVLFGWMALVGVVRAEFLRARNLEYVRAAKALGVSNLTIM FRHMLPNAMVATLTMLPFVITGTISLLAGLDFLGFGLPSSAPSLGELTLQAKQNLQAP WLAFTAFFAFAIMLSLLVFIFEGVRDAFDPRKTFE" gene 305295..306884 /locus_tag="RTM1035_01440" CDS 305295..306884 /locus_tag="RTM1035_01440" /note="COG4172 ABC-type uncharacterized transport system, duplicated ATPase component" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01440" /db_xref="CDD:33913" /translation="MLEVKDLRISFRQDGQVIPAVKGVSFSVDRGETVALVGESGSGK SVTALSTVSLLGSSAQVTGSVTYAGQEMVGADERRLRQVRGNDISFIFQEPMTSLNPL HTLEKQLRESLELHQGLTGDAARGRIVELLERVGIRDAASRLGAYPHQLSGGQRQRVM IAMALANKPDILIADEPTTALDVTIQAQILELLAELKREEGMGLLFITHDLGIVQRIA DRVCVMKDGEIVEAGPVADVFAAPQHAYTRKLLSARAVGLPSPVTEGAPVVAETHDLR VWFPIQKGFLKRTVGHVKAVNAATLSVRAGETLGIVGESGSGKTTLALAIMRLIASEG GIRFAGEDVNGWSTRELRRRRAEMQIVFQDPFGSLSPRMTAAQIIAEGLGVHGNPDGR PERDLVAEVMDEVGLNPAMMDRYPHEFSGGQRQRIAIARAMILRPKLVVLDEPTSALD MTVQVQIVDLLRELQRKYALAYLFISHDLHVVRAMSHRVMVMKDGDVVEAGDAETLFT APQTDYARKLLAAALEGRTEV" gene complement(306890..308245) /locus_tag="RTM1035_01445" CDS complement(306890..308245) /locus_tag="RTM1035_01445" /note="COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase" /protein_id="jcventer:1101493006646_RTM1035_01445" /db_xref="CDD:30980" /translation="MDTKTQLGKLGLFDAKVPRYTSYPTAPHFNRDVGQDQFTSWINA IPEGAEISLYVHVPFCRRLCWFCACRTQGTQTDAPVAAYLETLKTEIAMLGRQLPRGV RLSRLHWGGGTPTLLSPGMMSELAGAIRDIAPFTDTTEFSVEIDPNEIDAARLDALAG AGMNRASIGVQDFDEQIQKSIGRIQGYDITRHAVDEIRARGVKSLNADILYGLPHQNR ARITESVQKLLSLNPDRVALYGYAHVPWMAKRQQMIPSDALPTPQERLALFETARRLF LWDNYDEIGIDHFATASDGLSVAQKSGLLRRNFQGYTDDTAEVLIGLGASSISRFPQG YAQNAPATGAHTGAIRDGRFSTTRGHIFSPEDKLRSRMIEMLMCDFRIDSTEIFREFA IPAAELQAMLSAVERRFDGHLKLDATGLSIPLEARPLTRMIARQFDTYEMNADGHSSA I" gene 308329..309075 /locus_tag="RTM1035_01450" CDS 308329..309075 /locus_tag="RTM1035_01450" /note="COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases" /codon_start=1 /transl_table=11 /product="transcriptional activator protein FnrL" /protein_id="jcventer:1101493006646_RTM1035_01450" /db_xref="CDD:31008" /translation="MLKEKASIIPHECGDCPIRHRAVCARCESDELALLDQIKYYRSY ESGQTLIWSGDPMDFVGSVVSGIATLTQTMEDGRTQMVGLLLPSDFVGRPGRSSAAYD VVAVTDMVMCCFRKKPFEEMMVRTPHIAQRLLEMTLDELDAAREWMLVLGRKTAREKI ASLMAIIARRDATLNMNGTRGPLVFDLPLTREAMADYLGLTLETVSRQVSALKKDGVI ELEGKRRVTVPDFNRLLEEAGDDSDGGMLI" gene complement(309167..310006) /locus_tag="RTM1035_01455" CDS complement(309167..310006) /locus_tag="RTM1035_01455" /note="COG0589 Universal stress protein UspA and related nucleotide-binding proteins" /codon_start=1 /transl_table=11 /product="universal stress protein family protein" /protein_id="jcventer:1101493006646_RTM1035_01455" /db_xref="CDD:30165" /translation="MTYNSLFSVLTDESLVEETLAHATSMAARYDAHLDVLCLGVDRS QSGYYYSGASAIVLQETIARAQQEATAIETKARALLKNSSLRWAVEAGVSQLADLGRH VAARARFSDLVILAQPYGKGRGAELEPATESALFEARTPVIIAPAGGEPVPNPGRIMI GWNESNEALGAVRAALPLLKEADVVHVVVIDPPTHGPNRSDPGGLLSQYLARYGVKVE IDVLSKTLPRVSDVLLRHARDMDADMVVMGAYGHSRFREAIFGGATRYMLEQATMPVF MAH" gene 310209..311813 /locus_tag="RTM1035_01460" CDS 310209..311813 /locus_tag="RTM1035_01460" /note="COG3278 Cbb3-type cytochrome oxidase, subunit 1" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, cbb3-type, subunit I" /protein_id="jcventer:1101493006646_RTM1035_01460" /db_xref="CDD:33089" /translation="MTNYIKLIVLGLVTLLALIAANYARDLAYLVNALTVALVAGGLF LWTLRHTDEPKSQVDLSGEYMDGVVRAGVIATAIWGVVGFLAGTFIAFQLAFPGLNFD WAQGYANFGRLRPLHTSAVIFAFGGNALIATSFYVVQRTSAARLWGGNLAWFVFWGYQ LVIVLAATGYLLGATQSKEYAEPEWYVDLWLTVVWLAYLAVFLGTIVKRKEPHIYVAN WFYLSFIITVAMLHVVNNLSIPVSIFGSKSVQVFSGVQDAMTQWWYGHNAVGFFLTAG FLGMMYYFVPKQAERPVYSYKLSIIHFWALIFIYIWAGPHHLHYTALPDWASTLGMVF SIVLWMPSWGGMINGLMTLSGAWDKLRTDPVIRMMVISIGFYGMSTFEGPMMSIRAVN SLSHYTDWTIGHVHSGALGWNGMITFGALYFLVPKLWNRERLYSLSLVSWHFWLATIG IILYAAAMWVTGIMEGLMWREVDANGFLVNSFADTVAAKFPMYVVRGLGGVLFLSGAL IMCYNLWMTVTRSPAVAPVNSAVPAE" gene 311828..312553 /locus_tag="RTM1035_01465" CDS 311828..312553 /locus_tag="RTM1035_01465" /note="COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, cbb3-type, subunit II" /protein_id="jcventer:1101493006646_RTM1035_01465" /db_xref="CDD:42410" /translation="MAILDKHAILEKNVTLLAIFAFLVVTVGGIVQIAPLFWLENTIE DVEGMRPYSPLELTGRDIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESKYDHPFQ WGSKRTGPDLARVGGRYSDDWHVDHLRDPQSVVPESVMPKYGFLENRMIEPAHIEDLL KTHRLVGVPYSDEMIENAKADFMVQIDPDGDTEGLLARYPKAQVRNFDGQPGISEADA LIAYLQMLGTLVDFSTFTPDASR" gene 312566..312760 /locus_tag="RTM1035_01470" CDS 312566..312760 /locus_tag="RTM1035_01470" /codon_start=1 /transl_table=11 /product="Cbb3-type cytochrome oxidase component" /protein_id="jcventer:1101493006646_RTM1035_01470" /db_xref="CDD:45442" /translation="METYSLLREFADSWMLLALFTFFVGVVFWVFRPGATKSYENPST IPFRHEDKPAPTNGARHEEA" gene 312764..313636 /locus_tag="RTM1035_01475" CDS 312764..313636 /locus_tag="RTM1035_01475" /note="COG2010 Cytochrome c, mono- and diheme variants" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, cbb3-type, subunit III" /protein_id="jcventer:1101493006646_RTM1035_01475" /db_xref="CDD:32193" /translation="MAKQPNKKNQEVETTGHQWDGIEEYNNPLPRWWLWTFYACIVWA LWYVVAYPAWPLVQGATAGYKGWSTRANVAVELAEAEAANAEINARLASVELTEIAGD PELQGYATSAGNAVFKTWCAQCHGSGAAGVQAGGYPNLLDNDWLWGGTIEDIHATIAH GIRNEEDPDARYSQMPAFGDILESAQIDQVVNYVMSLSGEPQDATLVSDGQAVFMDNC AACHGEAAEGDIYQGAPNLADAIWLYGGSFDTIKETVIYSRFGVMPAMGGADLSEAEI RAVAIYVHQLGGGE" gene complement(313800..313994) /locus_tag="RTM1035_01480" CDS complement(313800..313994) /locus_tag="RTM1035_01480" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01480" /translation="MMNTEMPDRKDETMLGILANTFMNATRMDQAPPRQTPLHWPPAD RFGTRTGAEIEAHLIGRRRY" gene 314054..314944 /locus_tag="RTM1035_01485" CDS 314054..314944 /locus_tag="RTM1035_01485" /note="COG0583 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family protein" /protein_id="jcventer:1101493006646_RTM1035_01485" /db_xref="CDD:30928" /translation="MMDWLSLPPLTALRAFAALAETGGTVAAGDRLNVSHAAVSQQIK QLEAHIGLALVDRSGRQLRLTAEGQYLADALSLGFGAIARAVESLSQRNSERPLQIST TPSFAAHWLMPCLGDFRHRHPDIDLMIDPTPRLVALEPGGIDIAIRYGPGKWPGLEAE LLFSSPIVAVAAPRLIEGRRIEEPSDLADLPWLQEFGTNEASDWLRRRGVTRERAAGL MQVPGNLLLDGLRDGQGVAVTVLDWVRQDIAAGRLRLLFQDHEDSGYHVVARPGVLRP AARTFVVWLRRMARQHSVAQ" gene complement(314958..315026) /locus_tag="RTM1035_01490" CDS complement(314958..315026) /locus_tag="RTM1035_01490" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01490" /translation="MIILLIVFCQDAGATALTCIKF" gene 315035..316477 /locus_tag="RTM1035_01495" CDS 315035..316477 /locus_tag="RTM1035_01495" /note="COG0348 Polyferredoxin" /codon_start=1 /transl_table=11 /product="iron-sulfur-binding protein, RdxA/RdxB/FixG family" /protein_id="jcventer:1101493006646_RTM1035_01495" /db_xref="CDD:30696" /translation="MSVADSHPTEPQSLYAAREPVFPKKVYGKFRNLKWVIMIVTLGI YYVTPWIRWDRGAALPDQAVLLDLANRRFFFFWIEIWPHEFYFVAGLLVMAGLGLFLF TSALGRVWCGYACPQTVWTDLFILVERWIEGDRNARLRLHRQKKWDVRKARLRLTKWI TWLLIAVATGGAWVFYFTDAPTLLVDLFTLDAHPIAYTTIVVLTGTTFFFGGFAREQI CIYACPWPRIQAAMMDEDTLTVGYREWRGEPRKNSEAVKEGAPQGDCIDCMACVNVCP VGIDIRDGQQLECITCALCIDACDDIMAKIGKPRGLIDYMAFTDEEAERAGGKPKPIF KHILRPRTILYTALWSLVGIGLVFALFIRSDIDLTVAPVRNPTYVTLSDGSIRNTYEV RIRNMQHETREFEVTVKGSPAIAVELEGAEAGRISVAADEMYLQRVYLVAPPGSEPAT AERSDVRIWIEDLTNGERAYKDTVFNGKGE" gene 316474..316932 /locus_tag="RTM1035_01500" CDS 316474..316932 /locus_tag="RTM1035_01500" /codon_start=1 /transl_table=11 /product="fixH protein, putative" /protein_id="jcventer:1101493006646_RTM1035_01500" /db_xref="CDD:45646" /translation="MMAERQITGRHVLIGFVGAFSVIIGVNLVLAYSAVRTFPGLEVK NSYVASQEFNERKAAQEGLGWTVVADHAGGLLMLHITDVAGNPVEVAQLEATVGRATH VQDDQTPDFSYDGQAYVAPMDLGDGNWNIRMKAWDRDGTLFQQRVVLHKE" gene 316936..319119 /locus_tag="RTM1035_01505" CDS 316936..319119 /locus_tag="RTM1035_01505" /note="COG2217 Cation transport ATPase" /codon_start=1 /transl_table=11 /product="copper-translocating P-type ATPase" /protein_id="jcventer:1101493006646_RTM1035_01505" /db_xref="CDD:32399" /translation="MTATMRPSSSACPACAAAPAAEALAASALPRAQIALSLPTIHCS ACISKIERALAADSRVNSARVNLTLKRASIDAAPGVTAEEMRTLVEGLGYEAYELDQG TLNATANDRAGRDLLMRLAVAGFASMNVMLLSVSVWSGAEDATRDMFHWISAAITLPA IAFSGVPFFRNAWAALRNGRLNMDVPIVLAIVLAIITSLWETMLSGHHAYFDAAMALT FFLLAGRYLDHRTRAIARSAAEELTALEVPRATRLLDGVEDVVNVAQLAVGDLILVRP GGRMPVDGEIVSGTSEIDRSLLTGETLPVFAGLGQVVSAGEVNLTGPLTIRATAVGRE TSLHRMADLVAIAESGRSRYTSLADSAAKLYAPGVHILAGLSFLGWYLYTWDVRTALN IAAAVLIITCPCALGLAVPAVTTAASGRLFRRGMLIKHETALERLAQVDTVVFDKTGT LTTGAPQVTNLDDLPREALELALGLAQGSSHPLAQSITRAARAAGIVAADLTDLTEVP GYGTKASYMGQEIRLGRASWTGAQGRAETATFLKVADQAPLAFTFADALRPGAAEAVQ GLMDQGKRVILISGDTTPAVEALATRLGIPQWMAEALPADKAARVAALTAEGAHVLMV GDGLNDTAALAGAHVSISPATALDAARVASDIVLLGNDLAPISAACVTAKSATRRIRE NFQIATVYNVIAVPLAVVGLCSPLIAALAMSLSSITVSLNALRLR" gene 319123..319281 /locus_tag="RTM1035_01510" CDS 319123..319281 /locus_tag="RTM1035_01510" /note="COG3197 Uncharacterized protein, possibly involved in nitrogen fixation" /codon_start=1 /transl_table=11 /product="cytochrome oxidase maturation protein, cbb3-type" /protein_id="jcventer:1101493006646_RTM1035_01510" /db_xref="CDD:43521" /translation="MNILTYLIPISLILGGVGLVAFVYTVRSNQYDDPEGDSRRILSD DWDDRPKP" gene complement(319347..320744) /locus_tag="RTM1035_01515" CDS complement(319347..320744) /locus_tag="RTM1035_01515" /note="COG1686 D-alanyl-D-alanine carboxypeptidase" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase family protein" /protein_id="jcventer:1101493006646_RTM1035_01515" /db_xref="CDD:31872" /translation="MLVIVPLSAVAAPYAALVMDARNGEVLYSNNADTRLHPASLTKM MTLYVVFEAIENGEIGLDDKVVISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSAN DAATALGEAIEGSEAQFARRMNRTAEALGMTRTTFKNAHGLTENGHLSTARDMTILGR HLFYDFPQYYNLFSRITTDAGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASA ERNGERIIATVFGGQSTASRNAKVAELLDLGFNKAPTQVAVHRPARPPYLGKLGTAPV MIAAGEDRPSVAAKTVRLTTAAAVVKSLRPQSRPLPAAPIPAIAARDDIERALLAAQQ VATATTEPAPLPQGSAAVTPEIRPEQRPTEIVLASAPAPEPEPEVVTRVSTSGGRHWG INVGRYSSEYKARQMLLQTALNEMATLDGSLRKVVQRPAGFDANFMGMTRESADLACR RLQAKKVTCFMIGPS" gene complement(321030..321968) /locus_tag="RTM1035_01520" CDS complement(321030..321968) /locus_tag="RTM1035_01520" /note="COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="ABC transporter, periplasmic substrate-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01520" /db_xref="CDD:31059" /translation="MAQAADDLTLQLKWVTQAQFAGYYVALDKGFYEEEDLDVTIKPG GPDIAPTQVIAGGGADVTVEWMPAALSAREKGLPLVNIAQPFKSSGMMLTCLKETGVT GPADFPGRTLGVWFFGNEFPFLSWMSQLGIPTEGGADGVTVLKQGFNVDPLLQKQADC ISTMTYNEYWQVIDAGITEDQLITFKYEDQGVATLEDGLYVLEEKLSDPAEVDKLTRF VRASMKGWKWAEENPEEAAMIVLDNDATGAQTEEHQIRMMTEVAKLTAGSNGALDPED YERTVQSLLSGGSDPVISAHPGDGAWTHVISDAALN" gene complement(322054..322899) /locus_tag="RTM1035_01525" CDS complement(322054..322899) /locus_tag="RTM1035_01525" /note="COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="binding-protein-dependent transport systems inner membrane component" /protein_id="jcventer:1101493006646_RTM1035_01525" /db_xref="CDD:30945" /translation="MGWLALGVLTWALGWAVNSRLSHGPKTRATRLLVPVIFGLTIVV IWECLVRGLSISPVLLPAPTAIAATFAKSTHILWADFVQTALKGALTGYVMGCGAAFL TAIAIDRFPFLQRGLLPVGNFVAALPIIGMAPILVMWFGFDWQSKAAVVVVMVFFPML VNTVQGLTDTDAMQRDLMRTYAAGYWQTLFKLRLPAAMPFIFNGLKIATTLALIGAIV AEFFGSPIKGMGFRISTSVGQLALDLVWAEIVVAAIAGSGFYGAVALVEKAVTFWHPS QRSRA" gene complement(322899..323774) /locus_tag="RTM1035_01530" CDS complement(322899..323774) /locus_tag="RTM1035_01530" /note="COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit" /protein_id="jcventer:1101493006646_RTM1035_01530" /db_xref="CDD:30945" /translation="MMRNLLPVLTIVATLLALWYAAAVALNAQWARDQAARAEVTLTL PDLIADTWSQDKPKLPAPHQVAVEIWNTTGAMVLEGRGFSKRSLFYHSWITFSATALG FVLGTALGVALAIGIVYNRTMDMSVMPWVIASQTIPILAIAPMIIVVLNAVGISGLLP KAMISMYLSFFPVVVGMVKGLRSPTPMQLDQMRTWNASASQTFWRLRLPSSMPYLFTS LKVGMAASLVGAIVGELPTGAVAGLGARLLAGSYYGQTIQIWSALIMAATLAAVLVGL IGLIQRITLKRMGMT" gene complement(323823..324608) /locus_tag="RTM1035_01535" CDS complement(323823..324608) /locus_tag="RTM1035_01535" /note="COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01535" /db_xref="CDD:31313" /translation="MSSNTVISARDLSLTFQTGDGPVHALKDVSLEVEKGDFVSFIGP SGCGKTTFLRCMADLEHPTGGSLTVNGASAEEARKSRAYGYVFQAAGLYPWRTIGGNI RLPLEIMGYARDDQEARVKRVLELVDLAGFERKYPWQLSGGMQQRASIARALAFDADL LLMDEPFGALDEIVRDHLNEQLLHLWDRTNKTICFVTHSIPEAVYLSTKIVVMSPRPG RITDVIESTLPRVRPLDIRETPEFLDIAHRVREGLRAGHSDDL" gene complement(324704..326167) /locus_tag="RTM1035_01540" CDS complement(324704..326167) /locus_tag="RTM1035_01540" /EC_number="3.5.2.2" /note="COG0044 Dihydroorotase and related cyclic amidohydrolases" /codon_start=1 /transl_table=11 /product="dihydropyrimidinase" /protein_id="jcventer:1101493006646_RTM1035_01540" /db_xref="CDD:30057" /translation="MTTKVIKNGTVVTADRTWKADVLIEGETIKQIGTDLKGDSTIDA TDAYVIPGGIDPHTHLEMPFMGTTAAETFETGTWAAACGGTTMIVDFCLPGADGSIKN AINDWHRKSAPQICSDIGYHMAITDWNENVFTEMKDAVDMGVNSFKHFMAYKGALMIE DDEMFASFKRCAELGALPMVHAENGDLVAEMQQKYFDQGITGPEGHAYSRPPEFEGEA ANRAICIADAAGVPLYIVHVSCEQAHEAIRRARQKGMRVYGEPLVQFLTLDESEYFNK DWDHAARRVMSPPFRSKDHQDSLWAGLQAGSLQVVATDHAAFSTAQKRAGRSDFRIIP NGSNGLEERLAVLWTHGVETGRLTLNEFVAVTSSNVAKILNIYPKKGAIVEGADADLV VWDPKITKTISASNHHSILDYNVFEGFEVKAQPRYTISRGEVIWAWGQNSQPQPGRGR FVPRPAFPSAHQALSKWKALTAPKMIQRDPLNIPAGI" gene complement(326247..327497) /locus_tag="RTM1035_01545" CDS complement(326247..327497) /locus_tag="RTM1035_01545" /note="COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases" /codon_start=1 /transl_table=11 /product="N-carbamoyl-L-amino acid amidohydrolase" /protein_id="jcventer:1101493006646_RTM1035_01545" /db_xref="CDD:30969" /translation="MSAPGENLKINSTRLWDSLMEMAKIGPGIAGGNNRQTLTDEDAE GRALFQTWCTAAGLTMGVDEMGNMFARREGTDPQALPVYVGSHLDTQPTGGKYDGVLG VLAGLELIRTLNDLDIKTKHPIVLTNWTNEEGTRFAPAMLASGVFAGVMDRDWAYDRV DAKGKRFGDELERIGWKGPEKVGARQMHAFFELHIEQGPILEAEGKQIGVVTHGQGLR WIECTVTGKGQHTGSTPMYMRRNAGRGLARVTELVHEIALQYQPNAVGAIGHIDVYPN SRNVIPEKVVFTVDFRSHVLETLEAMAEELMSTAPGICADVGVKFSAEVVGAFDPPAF DETLTARVRDAADRLGYSHMDIVSGAGHDACWINKVYPTTMVMCPCKDGLSHNEAEEI TPDWARAGTDVLLHAVLETAEVVE" gene 327644..328291 /locus_tag="RTM1035_01550" CDS 327644..328291 /locus_tag="RTM1035_01550" /note="COG1309 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, TetR family protein" /protein_id="jcventer:1101493006646_RTM1035_01550" /db_xref="CDD:31500" /translation="MLQSPAAQAGRKSSRIQVRNRKRILEAALEVFSTHGYRGATLDQ IAAEAGLSKPNILYYFEGKEEIHVTLLNQLLDAWLAPLRAIDPQGEPLDELMGYVHRK LEMSRDLPRESRLFANEILQGAPRMVPHLDSVLKPLVDQTAAVIEGWCVQGKLAPVDP RHLLFSIWATTQHYADFEAQVGVLMGEVDVHTGAAAHLEALFRRLLTPGSIVENS" gene 328408..328977 /locus_tag="RTM1035_01555" CDS 328408..328977 /locus_tag="RTM1035_01555" /note="COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose 3,5-epimerase" /protein_id="jcventer:1101493006646_RTM1035_01555" /db_xref="CDD:40985" /translation="MQIEQTNLPGVVILTPARHGDTRGFFSESWNRRRMQEAGITIDF VQDNHSLSEQVGTVRGLHFQSPPHAQAKLVRCGRGALYDVAVDIRRGSPTYGQWVGVD LSFENGRQLLIPEGFLHGFVTRAPMTEIIYKCSDYYAPECDGAVRFDDPEIGIDWGID PAAAVLSGKDAKAPLLREFVSPFVYEATV" gene 328974..330023 /locus_tag="RTM1035_01560" CDS 328974..330023 /locus_tag="RTM1035_01560" /note="COG1088 dTDP-D-glucose 4,6-dehydratase" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6-dehydratase" /protein_id="jcventer:1101493006646_RTM1035_01560" /db_xref="CDD:31285" /translation="MRLLITGGAGFIGSAVVRLAVARGHVVINLDALTYAACLENVAS VAQSPLYSFVHADIRDRAALDRVFATHAPDAVLHLAAESHVDRSIDGPGTFVETNITG TYNLLEAARGYWQARNKPEGFRFQHISTDEVYGSLPSDPRIKFTEDTPYDPRSPYSAS KAASDHLVRAWHETYGLPILITNCSNNYGPFHFPEKLIPVIILNALAGKPLPIYGDGS NVRDWLYVEDHAEALLTVLERGVPGRSYNIGGENELSNLDLVRKLCAVLDELAPRDDG LSYAAQISFVTDRPGHDARYAIDPTRIRGELGWRPSVTVDEGVRRTVRWYLENEAWWR ALLARDGVGKRLGAG" gene 330048..330893 /locus_tag="RTM1035_01565" CDS 330048..330893 /locus_tag="RTM1035_01565" /note="COG1091 dTDP-4-dehydrorhamnose reductase" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose reductase" /protein_id="jcventer:1101493006646_RTM1035_01565" /db_xref="CDD:31288" /translation="MRILVFGRTGQVATEMQRQAEVTALGREVADLSDPMACAEAIRD HAPDLVINAAAYTAVDRAESEEDLATVINGVAPGAMARACANLGIPFCHVSTDYVFDG SGAAPRAPSDPVAPCNAYGRSKLAGEEAVRAAGGQAAILRTSWVFSAHGGNFVKTMLR LSETRDALSVVDDQIGGPTPAADIAAALLSMGRAMVAGHAGGLYHFSGAPDASWADFA REIFAQAGRVTVVTGIPTRDYPTPAARPQNSRLDCGSLAAEFGIGRPDWRAGLARVLK ELEQA" gene 330890..331783 /locus_tag="RTM1035_01570" CDS 330890..331783 /locus_tag="RTM1035_01570" /note="COG1209 dTDP-glucose pyrophosphorylase" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="jcventer:1101493006646_RTM1035_01570" /db_xref="CDD:31402" /translation="MTTARKGIVLAGGSGTRLYPITMGLSKQLLPVYDKPMIYYPLTA LMLAGIREIAIITTPQDQAQFQRLLGDGSQWGLTFEYIEQPSPDGLAQAYLLAEGFLG GQASALVLGDNIFYGHGLPQQLERAAQQEKGGTVFGYRVADPERYGVVEFDGAGRAVS IVEKPQEPKSDFAVTGLYFLDGEASERAKAVQPSERGELEITALLEMYLRDGLLSVEM MGRGYAWLDTGTHASLLDAGNFVRTLEQRQGQQVGCPEEIAYDKGWIDAAALEARVAL FKKTDYGAYLGRLLQGGRVKG" gene 331787..332725 /locus_tag="RTM1035_01575" CDS 331787..332725 /locus_tag="RTM1035_01575" /note="COG0463 Glycosyltransferases involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="glycosyl transferase, group 2 family protein" /protein_id="jcventer:1101493006646_RTM1035_01575" /db_xref="CDD:40622" /translation="MDGPQAPHVVILLAVYNGGDFLSDQLQSIARQTHDDWQVLASDD GSKDSSRKILEGFAATHPVTCLSGPGAGAATNFLSLIRQTPGHAPAGHWMAFCDQDDV WLPDKLSRGITALSTSDDPRPALYCSRTWITDTALGERRLSAARPRPPSFRNALVQNV ASGNTILLNPAAARLVEEAAQKIERVVVHDWWVYQLITGAGGRVVHDDTPTLYYRQHD VNQIGSNDTRLARLRRIRQLLQGHFRAWNEVNIAALSRLDGYLTPENRAILAEFAAMR RGPMPARLARLWRLGLYRQSRISTFALWVSLVLNRI" gene 332806..333414 /locus_tag="RTM1035_01580" CDS 332806..333414 /locus_tag="RTM1035_01580" /EC_number="2.5.1.17" /note="COG2109 ATP:corrinoid adenosyltransferase" /codon_start=1 /transl_table=11 /product="cob(I)yrinic acid a,c-diamide adenosyltransferase" /protein_id="jcventer:1101493006646_RTM1035_01580" /db_xref="CDD:32292" /translation="MTDDPDRHAMKMAKKKAARDKIMATKTDQKGLIIVHTGKGKGKS SAAFGMIFRCIAHGMPCAVVQFIKGGMSTGERDLILSKFSDACAFHTMGEGFTWETQD RTRDTEMAQAAWAKAKELIRDETNKMVLLDEINIALRYDYLDINEVVQFLAEEKPHMT HVVLTGRNAKDELIEIADLVTEMELIKHPFRSGIKAQIGVEF" gene 333418..333765 /locus_tag="RTM1035_01585" CDS 333418..333765 /locus_tag="RTM1035_01585" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01585" /translation="MARTRLLTEFGMGTSLRRQDYTEAAARAVRDALWHNSINLAELF GFEKADMLIDLDIAVQAPEEVDVEVLRAIFPYGQVRVQVARGGLDIPRAVGKPTVIAN ACISVSFDMEAKA" gene 333762..334127 /locus_tag="RTM1035_01590" CDS 333762..334127 /locus_tag="RTM1035_01590" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01590" /translation="MSAQRFIIEMGMGNDLHGMDYQKAAVRAIEDAIRHSTIPMFLNT PLDHQDMAVKVTVGVQEPERVDPEVLKAGLPRGRATVQVVFGGQNVTDPGSGETLVIA TAAVEAFFPSQVGKWVLGA" gene 334230..334997 /locus_tag="RTM1035_01595" CDS 334230..334997 /locus_tag="RTM1035_01595" /note="COG2186 Transcriptional regulators" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase complex repressor" /protein_id="jcventer:1101493006646_RTM1035_01595" /db_xref="CDD:32369" /translation="MPFQKVTPEKLSTAVTRQIEKLVLQGILRPGERLPAERDLAEKL GVSRPSLREAVAELQDKGLLSARAGAGIYVADVLGSAFSDALIRLFAEHDEAVFDYIG FRRDLEGLAACRAARLASDTDLQVIQTLMDKMEAAHRKTNPADEARLDAEFHMAIIEA SHNVIMLHMMRSMFQLLREGVFYNRQVMFKQRTTRGALLDQHRAINAAIQARDPEAAR AAVNDHLNYVEKALADQQKADRNEAIAKQRYEHEQSR" gene complement(335007..336098) /locus_tag="RTM1035_01600" CDS complement(335007..336098) /locus_tag="RTM1035_01600" /note="COG0535 Predicted Fe-S oxidoreductases" /codon_start=1 /transl_table=11 /product="pyrroloquinoline quinone biosynthesis protein PqqE" /protein_id="jcventer:1101493006646_RTM1035_01600" /db_xref="CDD:30881" /translation="MANPPIAMLAELTHRCPLSCPYCSNPVELTARETELSTADWVSV FQQAADLGVLQLHLSGGEPASRRDLEELIKAARDAGLYTNLITSGIGLTEKRLAALDD AGLDHIQLSLQGTDAEMADRIGGYMGGFDRKMQVAKWIAAIGFPLTLNFVMHRGNMHQ LPRAIEMAQDMGARRIEVATVQFHGWAMLNRGALMPDRAQAREASRIVAEARAALKGR LVIDYVPADYHADYPKTCMGGWATTGLNVAPDGLVLPCHAAQTIKTLTFDNVRDRPLA DIWHNGAAFNAFRGTDWMQEPCRSCERKTIDFGGCRCQAMAIAGDPAATDPVCIKSPH HAQMRSLAEDFSGQSDADLTWRVMEKTPL" gene complement(336100..336372) /locus_tag="RTM1035_01605" CDS complement(336100..336372) /locus_tag="RTM1035_01605" /codon_start=1 /transl_table=11 /product="coenzyme PQQ synthesis protein D" /protein_id="jcventer:1101493006646_RTM1035_01605" /db_xref="CDD:45302" /translation="MTPDSIPHLPRGVRLHYDRVREDWVLLAPERAVRLDPIGHAILS RVDGVQSFGALTADLAATYNAPLDDVTRDSAEFLQGLAERRFLEMR" gene complement(336369..337118) /locus_tag="RTM1035_01610" CDS complement(336369..337118) /locus_tag="RTM1035_01610" /note="COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C" /codon_start=1 /transl_table=11 /product="pyrroloquinoline quinone biosynthesis protein PqqC" /protein_id="jcventer:1101493006646_RTM1035_01610" /db_xref="CDD:45213" /translation="MTPTRDAFEARLRQIGAERYHDRHPFHHMLHGGHCTPDQVRAWV INRYYYQSRIPMKDAAFLSRVDDPDLRRIWRSRIEDHDGTAENEGGIRRWLRLAQAVG LDPDYVASAQGVLPATRFAVDAYVAFVREKPLLEAVAASLTELFAPKIHAQRIEGLLA NYAFADDSSLAYFRNRLKEAPKDVAFGLKWVLDRADTTEKQDAAAAALTFKTDVLWSQ LDALSSAYVDPARIPPGAWHPGEGLLAKGAA" gene complement(337115..337882) /locus_tag="RTM1035_01615" CDS complement(337115..337882) /locus_tag="RTM1035_01615" /note="COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I" /codon_start=1 /transl_table=11 /product="pyrroloquinoline quinone biosynthesis protein PqqB" /protein_id="jcventer:1101493006646_RTM1035_01615" /db_xref="CDD:31428" /translation="MTTDGVRWVVLNASPDIRAQLAANPALHPRSLRDTPIAGVLLTN GDIDHVAGLLSLREQQPFTLYATGEIHGVLADNPLMQAVDPARVPRVPIALNQPVPLL PGLTATLFAVPGKVPLYLEGETVQTDLEGEQTTGVHLEAEGRNIFYIPGCAAVTDRLA ERLRGADMVFFDGTLWRDDEMITMGLSQKTGRRMGHISMSGPDGSIAALRDLGIGRKI YVHMNNSNPVLRPDASERAEAESAGWTIGQDGMEITA" gene 338338..338541 /locus_tag="RTM1035_01620" CDS 338338..338541 /locus_tag="RTM1035_01620" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01620" /translation="MIELLFVACLARQPEICEERAFQYTDRTARGCMAEAIPELSKWA ATHPRWRIARWSCQPLGGARTRA" gene 338574..339191 /locus_tag="RTM1035_01625" CDS 338574..339191 /locus_tag="RTM1035_01625" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01625" /translation="MLAVGPVLAGTAHEGYDLIFRTGTLEDFAPGDALHYQSETENAA APPEAQGAQGYDLRIEEGGTARLMRVLDTGQQPVAGFDATVGNPMAMFFLERLVRDLA QATGGSTFYIRNRIKESLLAPVGISPVQVTWQGKDHAGQEVLLAPFVGDANAARLGPF AELQVVFEVSETVPGWYHSMRAETPERDSGGRYFSSTLALSETEE" gene 339188..339535 /locus_tag="RTM1035_01630" CDS 339188..339535 /locus_tag="RTM1035_01630" /note="COG0402 Cytosine deaminase and related metal-dependent hydrolases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01630" /translation="MRCLAILLCLFPTMGLAQSVADQLNDYPTEARADYVFGCMAANG NTREMLRRCSCSIDEIAAILPYKDYVSAETVLALRQGNGERMSMFKAGPVSEGIVADL RRAQAEAEIICFK" gene complement(339542..340375) /locus_tag="RTM1035_01635" CDS complement(339542..340375) /locus_tag="RTM1035_01635" /note="COG5501 Predicted secreted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01635" /db_xref="CDD:35060" /translation="MPDPEAQMTRFPMTALCLSLTLGTAALAEEPRNPLQDGETWDYL RADILDANKALSPGAVFAVDAPYRAHDAATVPVVVTQTDQSVGPITTLKIVVDENPAP LAAEIKFGPAMAPLSFEARVRVNAYSNLRVIAETASASYLDGRFVKAAGGCAAPATRD PEVALAHMGEMRLRHFDSAPVQIGSRRDAQLMIRHPNYSGLQRDQITQLFVPAHFIQD LTVWQGDEMLFSLTGGISISEDPVFRFSYTDNGTPDLRIRAEDTEGNVFEEVLPKASA S" gene 340454..341485 /locus_tag="RTM1035_01640" CDS 340454..341485 /locus_tag="RTM1035_01640" /note="COG0491 Zn-dependent hydrolases, including glyoxylases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01640" /db_xref="CDD:40833" /translation="MFEIVLSLCLLANPETCETRLLPVGAQDCAQAVERAEEIAPDWG DAVIAGPFDCVARPNSGMAFAQIAPGVFVHRGQVADVTPDNLGDVANIGFIIGEDSVA VIDAGGSRAVGEAVYLAVRQITEKPISHLILTHMHPDHVMGAEVLIEAGAQVVGHRKL GQALAARAETYETSFARLMGAGFIGSRVPTVGEGIADRAEIDLGGRMLDLVAWETAHS ESDVTVFDRQTATLFTGDLVFDAHSPALDGSVLGWLRVLEAMGAPAPARIVPGHGGPV LEWPEGVVDLRRYLEVLRDETRAAVSQGLRLGEAIETVGQSEAARWALFDLFHPRNVT AAFTELEWE" gene complement(341492..341986) /locus_tag="RTM1035_01645" CDS complement(341492..341986) /locus_tag="RTM1035_01645" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01645" /translation="MDTLSAAVMWPHPPENQAATPVLSPEAARLAERLALRRLTLEEA ESAVDAAPNLTKDDYTAIFSDVFDRLNQRRGEIMGGITRYARNQARMAEEIEALRGEI ATLTKAESPDFDRIDQLEEDLDWRARVFDDRRRSLTYACETPVLLEKRLYALAQILAA HVPD" gene 342237..343349 /locus_tag="RTM1035_01650" CDS 342237..343349 /locus_tag="RTM1035_01650" /note="COG1062 Zn-dependent alcohol dehydrogenases, class III" /codon_start=1 /transl_table=11 /product="Alcohol dehydrogenase GroES-like protein" /protein_id="jcventer:1101493006646_RTM1035_01650" /db_xref="CDD:31262" /translation="MRTRAAVAVEAGRPMEIMEVNLEGPKAGEVLVEIKATGLCHTDD FTLSGADPEGAFPAILGHEGAGVVLEVGPGVTSLQPGDHVIPLYTPECRECEYCLNPK TNLCQKIRSTQGQGVMPDGTSRFSMLDGTPILHYMGCSTFANHTVLPEIALAKVRKDA PFDKICYIGCGVTTGVGAVINTAKVEIGSRAIVFGLGGIGLNVLQGLRLAGADQIVGV DINPGRIEMATRFGMTDFVNPKEVSGDLVAHLVALTGGGADYTFDATGNVGVMRTALE AAHKGWGESIIIGVAPAGAEISTRPFQLVTGRSWRGTAFGGARGRTDVPKIVDWYMQG KIEIDPMITHTMPLEDINKGFELMHAGESIRSVVIY" gene 343465..345267 /locus_tag="RTM1035_01655" CDS 343465..345267 /locus_tag="RTM1035_01655" /note="COG4993 Glucose dehydrogenase" /codon_start=1 /transl_table=11 /product="putative methanol dehydrogenase protein, large subunit" /protein_id="jcventer:1101493006646_RTM1035_01655" /db_xref="CDD:34598" /translation="MKKSLLMSAAFFVGASGMATANSDLQALIDDPTQWAIQTGDYAN TRYSELEQINKDNVGKLQVAWTFSTGVLRGHEGSPLVIGDIMYVHTPFPNIVYALDLS NNGKIIWKYEPKQDPNVIPVMCCDTVNRGVAYADGKIFLHQADTTVVALDAKSGEVKW TAVNGDPSIGETNTATVLPVKDKVIVGISGGEFGVRGHTTAYDMNTGELVWRAYSMGP DSDTLIDPENTTHLGKPVGPDSGTNTWEGDQWKIGGGSTWGWYSYDAELDLFYYGTGN PSTWNPAQRPGDNRWSMTIMARDPDDGKAKWLYQMTPHDEWDYDGVNEMILTDQEVDG QMRKLLTHPDRNGLAYTLDRETGELLVAEKFDPVVNWTTGVDMDPASPTYGRPAVVAE YSTEQNGEDVNSTGICPAALGTKDQQPSAYSPKTGLFYIPTNHVCMDYEPFRVSYTAG QPYVGATLAMYPAPGSHGGMGNFIAWDNIEGKIKWSIPEQFSVWSGALATAGDVVFYG TLEGYLKAIDASSGDELYSFKTPSGIIGNVMTYEHGGKQYVGILSGIGGWAGIGLAAG LTDPNAGLGAVGGYAALSDYTALGGQLTVFKLPD" gene 345350..345886 /locus_tag="RTM1035_01660" CDS 345350..345886 /locus_tag="RTM1035_01660" /note="COG2010 Cytochrome c, mono- and diheme variants" /codon_start=1 /transl_table=11 /product="putative cytochrome c protein" /protein_id="jcventer:1101493006646_RTM1035_01660" /db_xref="CDD:32193" /translation="MLTPRRLLSAGLTACLALVALPVLGEEAPSPDDPKFAASYEQDG LYFTADDIPTFNVAEDGTVDWQTFSGFRRYHAECHVCHGPDGEGSTYAPALKESAVAM DYYDFYGVVAEGRQKVNASENSVMPSFGTNPNVMCYLDDIYVYLKARGLGVVERGRPA KKEAKSEGIQAAEDACMG" gene 345936..346697 /locus_tag="RTM1035_01665" CDS 345936..346697 /locus_tag="RTM1035_01665" /note="COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="putative methanol oxidation protein" /protein_id="jcventer:1101493006646_RTM1035_01665" /db_xref="CDD:47410" /translation="MAELVSQSAFRVCADPANDPMSTEAGTGFENRIADLLAAELERP VEYSWFPMATGFVRRTLGEKRCDVIIGFAQGHELVQNTNHYMTSVYTLILPKTGELSD VVTLADPRLKGKVLGIVAGSPPGTHMARNGLMAKARAYPLFVDRRVQSPASDMLRDLE AGEIAAAVLWGPIGGPLVKREHPDLQVVPLLHEVGAPKMFYRITMGVRLGEDQWKREL NSLIRRNQAEIDAILNDAGVPLLNDMGTEAKVLSQ" gene 346694..347242 /locus_tag="RTM1035_01670" CDS 346694..347242 /locus_tag="RTM1035_01670" /note="COG0607 Rhodanese-related sulfurtransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01670" /db_xref="CDD:29073" /translation="MIRAGLAVLMLLAGPLAAQGVAEPEEYRGEPYRAPVPETLAGAV VVDATAAHVLWQRGEVAFVDVLPRAPKPVNLPAGTIWRDKPRLSIPGSVWLPNTGYER IAPETEAYLRDGLAEVTAGDSGHPVLFFCLEDCWMSWNVAKRALEMGYTKVYWFPEGT DGWAFEDYPLEKIDARPGEPGT" gene complement(347312..348127) /locus_tag="RTM1035_01675" CDS complement(347312..348127) /locus_tag="RTM1035_01675" /note="COG5501 Predicted secreted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01675" /db_xref="CDD:35060" /translation="MTRLALALAAAMLSGPALAQSAWPDIQSALYGDAPLVVQSAHVS LDAPYRATDDARTVLGGHIVAPPGQKITTVTLVIDENPAPVAAEFHLAAPQAEFAFSL TTRLNGQTPLHLVALTDAGERHMAEAFLKTSGQGACAAPPGTDPVAALANLGEMELAF LPDLTAPSKSVNTRLAALSGKVHALDVDISHPSHSGLAMDQISLLFTPLRVVDELEIN LDNAPYLTMTGSISLSENPRLRVSIPTGTTTANVTLRDTDGTTTSARTSLAAY" gene complement(348129..348647) /locus_tag="RTM1035_01680" CDS complement(348129..348647) /locus_tag="RTM1035_01680" /note="COG1001 Adenine deaminase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01680" /translation="MTRALFLWLLAGFLSASTATAQGLVPLRDGASVAFLGITFIDTS TEGAYNPVRADETARLALVQDYVKTRFAETGFAMLDLDPITTDLATVTNPADCYGCET RLAARLDADYVLVGEVQKVSNLILSMNLVLRAVPSGEVVRARAVDIRSNTDDSWLRGM RYIFKTHMFVEG" gene complement(348759..349943) /locus_tag="RTM1035_01685" CDS complement(348759..349943) /locus_tag="RTM1035_01685" /EC_number="2.6.1.1" /note="COG1448 Aspartate/tyrosine/aromatic aminotransferase" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase" /protein_id="jcventer:1101493006646_RTM1035_01685" /db_xref="CDD:31637" /translation="MFDALKEKPADKILALGQAFREDPRETKIDLGVGVYKTPEGVTP VMRAVKAAEKQLWEAETTKAYTALAGDPAFADAMIALVLGDAVARDQVSAIATPGGTG AVRQAFDLVKMANPGGRVFVSDPTWPNHLSILAHMGIEVVMYRYFDPETVGVDFTGMM ADLDGLRAGDVVLLHGCCHNPTGANLNMTEWRAVVDLLNARGALPMIDIAYQGFGDGL EADAAAVRFVAENCPEMLIAASCSKNFGIYRERTGILMAVAQDKSLQKVTQGNLAYLN RQNYSFPPDHGARLVTMVLTDPALRADWQSELEDVRLGMLKLRETLAAELQRLSGSDR FGFVAQHRGMFSRLGATPEQVERLRAEHAIYMIGDSRINIAGLNARTVPILAKAMIEV GV" gene complement(349943..350794) /locus_tag="RTM1035_01690" CDS complement(349943..350794) /locus_tag="RTM1035_01690" /note="COG2897 Rhodanese-related sulfurtransferase" /codon_start=1 /transl_table=11 /product="3-mercaptopyruvate sulfurtransferase" /protein_id="jcventer:1101493006646_RTM1035_01690" /db_xref="CDD:32722" /translation="MDDPKTLVSTDWLAAHLKDPDLRILDGTMFMAAEGRSGRAEYEA AHIPGARFFDIDDISDARSELPHMAPPVEKFMSKLRAMGVGDGHQVVVYDAKGLFSAA RVWWLFRLMGQDNIAVLDGGFPKWQAEGRAIEDMPPIIRDRHMTVRRQNQMVKDVTQV AAAAKLGDYEILDARSAARFRGEAPEPRAGLRAGHIPGSKNVPYTDLLNADMTMKDAD ALRAVFAATGMDMTKPVITSCGSGVTAAIINLALERIGKTDHALYDGSWTEWGAFPTL PVATGEV" gene complement(350875..351135) /gene="smpB" /locus_tag="RTM1035_01695" CDS complement(350875..351135) /gene="smpB" /locus_tag="RTM1035_01695" /codon_start=1 /transl_table=11 /product="SsrA-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01695" /translation="MELLIALLAGATAAMIAAGLGLSPRLGWLLQAGMGAIGGAAGAY ILSHAPATGSDTAYLIRLVAVTATGGIVTLWALRAIARLLRR" gene complement(351152..351628) /locus_tag="RTM1035_01700" CDS complement(351152..351628) /locus_tag="RTM1035_01700" /note="COG0691 tmRNA-binding protein" /codon_start=1 /transl_table=11 /product="SsrA-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01700" /db_xref="CDD:31035" /translation="MAKAKENPNYKVIAENRRARYDYAIEDDLECGIILGGSEVKSLR VNSANIAESYAMVENGELWLVNSYIAPYEQAKTFGHDEKRRRKLLVSKKELSRLWSET QRKGMTLVPLVLYFNHRGMAKLKIGIAKGKKNHDKRETEAKRDWARQKQRLLKDHG" gene complement(351676..352332) /locus_tag="RTM1035_01705" CDS complement(351676..352332) /locus_tag="RTM1035_01705" /note="COG1802 Transcriptional regulators" /codon_start=1 /transl_table=11 /product="regulatory protein GntR, HTH:GntR, C-terminal" /protein_id="jcventer:1101493006646_RTM1035_01705" /db_xref="CDD:31987" /translation="MEIRRADMIADTLEELVFTGDFSDGDRLDEIRLARQFNVSRTPI REALQRLVASGLAVQIPRRGVFIRQPGLVELMEMFETMAEIEGVCGRLAAHRISESAL ADLDTANARCTEAIAADDADSYYRENERFHHMIYRHAGNGFLEQEALRLHRRLKPFRR MQLRLRGRMAQSMAEHEAVVTALRAGEAERAATVLRGHVAIQGEKFHLLMASLRRAAE " gene 352470..353522 /locus_tag="RTM1035_01710" CDS 352470..353522 /locus_tag="RTM1035_01710" /note="COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01710" /db_xref="CDD:31825" /translation="MNKMTFTAAAAAGMMLLSSAAFATELRLSHQWSNNDVRHKVAQI VADEVAAAGVDLDIKIFGSESLFKAREQYTPLSRGQLDMTVLPLSYAGGQQPAYNLTL MPGLVKNHDHAARLSDSPFMEAVEAKMAEDDVMVLVHGYLAGGFASTGKCITKPEDVA GMQTRAAGKAFEQMLAGAGASIASMASSEIYNAMQTGVLDAVNTSSSSFVSFRIYEQV KCYTPAGDVALWFMYQPLLMNKSTFDGLSAEQQAALMAAAEKAEAFYLEEAKKEDAAS VQVFKDAGVEIASMTEEDFAAWRALAAERPIRNSLPAWPMGRRCLIWRSRSSDPLRLP RLICAAANFLLPPDMR" gene 353526..354074 /locus_tag="RTM1035_01715" CDS 353526..354074 /locus_tag="RTM1035_01715" /note="COG3090 TRAP-type C4-dicarboxylate transport system, small permease component" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01715" /db_xref="CDD:32904" /translation="MAGHASGAIARTGQNPFLRAVAALSTLAGWISAAMIVASVFITC QMIWVRFVLNGTTVWQTEAVIYLMIAATLLGLSYVQRLRGHVNVDLIPLAVPRRARKG LAVVTLSLSIVIVAVMLWYGYEFWHVAWARGWTSDTVWGIDLWIPYLAIPVGLGLFLL QLVADLVALLLNIDAPFGLEDV" gene 354074..355390 /locus_tag="RTM1035_01720" CDS 354074..355390 /locus_tag="RTM1035_01720" /note="COG1593 TRAP-type C4-dicarboxylate transport system, large permease component" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01720" /db_xref="CDD:31781" /translation="MDPLLLGLIVAIATIVVLFSGVSVALGLLIVSGGFLIVFDGMRS LELLPEIFFGKLNNFALLSIPMFIIMGASIASTRAGADLYEALERWLTRVPGGLVISN LGACALFSAMSGSSPATCAAIGKMGIPEMRKRGYPDAVAAGSIAAGGTLGILIPPSVT MIVYGIATETSIGRLFLAGVIPGLLLVGLFMAWSLYSTWRSGDMNLLTGRSYSWRERI EILPRVLPFLFIILGVLYAMYGGIATPSETAAVGALLCLVIAMVIYKLWSPVALWVVL RDSTRESVMILFIIGAAGVFSYMLSSLFITQSIAEWIGTLDVNRWVLMGAVNVFLLVA GFFLPPVAVILMAAPILLPIITTAGFDPIWFAVILTINMEIGLISPPVGLNLYVINSI APDIKLKTILVGSLPYVGCMVLAIVLLCLFPGLATWLPDLVMGTMR" gene 355387..356631 /locus_tag="RTM1035_01725" CDS 355387..356631 /locus_tag="RTM1035_01725" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01725" /db_xref="CDD:45193" /translation="MSVLADLLATVFERRYRGASEPDHKNRSIEDLCRDLLGSSGEVS GMALARLILDRYAGMADAEKLEFFRFLTEGMGVDPESVRNALDAFEAGPDRDSYRGFM DAAEPPRQELARRLNQVPGATAQLVAMRADLLRLARDNPALAVVDLDLKHLFSSWFNR GFLVLRPINWSSPADVLEKIIAYEAVHAIDSWDDLRRRLAPKDRRCFGFFHPAMPDEP LIFVEVALSRGIPGAIHDVLSEERAVIGAHEADTAVFYSISNCQSGLAGISFGNSLIK QVVADLSQELPGLKTFVTLSPIPGLTRWLSETRAVLPEEAETRRAVTAHYLLKAKRPD GGPYDPVARFHLGNGASVHAVHAGADLSPNGQKQSGGVMVNYLYDRAQISQNHERFAG AGVIAASAEVTALAAIAAKKTE" gene 356644..358161 /locus_tag="RTM1035_01730" CDS 356644..358161 /locus_tag="RTM1035_01730" /note="COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II" /codon_start=1 /transl_table=11 /product="malonyl-CoA synthase" /protein_id="jcventer:1101493006646_RTM1035_01730" /db_xref="CDD:30666" /translation="MANPLYDNLFGRHAGQTAPFLHLANGAVVSYDAFLRMTARYAHA LRGAGLVPGDRLAAQVEKSPEALAVYAACVQAGIVFLPLNTGYTGDELGYFVGDSGAK VLLCDGAKAGALQGVADRAGATLMTLNADGTGTLPEAAEGLNESFETAPREPDDLAAF LYTSGTTGRSKGAMLTQRNLLSNAEVLVDYWRFSSDDVLLHALPIFHTHGLFVATNII LLAGGSMIFLPKFDQDQVIAQLPRATSMMGVPTFYTRLLDDPRFTSALVAHMRLFTSG SAPLLAETHVAFEERTGHRILERYGMTETNMNTSNPYEGARRAGTVGFPLPGVELKIT DPQTGAEVPQGEIGIIEVRGPNVFAGYWNMPEKTAEELRTDGFFITGDLGMIDDQGYV QIVGRNKDLIISGGYNIYPKEIELLLDDQPGVLESAVVGVPHPDFGETVVGFLVPQKG AVVDIDAIAGAAAKSLARFKHPRKLIVLEELPRNTMGKVQKNILRAEYAGLFASA" gene 358415..359596 /locus_tag="RTM1035_01735" CDS 358415..359596 /locus_tag="RTM1035_01735" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01735" /db_xref="CDD:31027" /translation="MFRLALLVFAGLMALSPPVQAQEVRAVVLRVDYPALLPVSRLDL RPEDLGFAGGQLATEDNQTTGRFMGQTYVTDVVAATPETALAEFERLQGEGLRFFAVQ ARAGELLAMSEAAAPDTLIFNTLAPDTALRSAECRGNILHVAPSRQMQSDAVAQFLIW KKWPRWALIHGSHPEDIALAEAYRASAAKFGTKIVDEREFTDTGGARRTDTGHVQVQR QLPVFTQDLKEHDVIIAADETDVFATYLPFHTWRPSPIVGSAGLRPLAWHPALEAWGG TQFQHRFEELTGRYMRPEDYTAWLALRVLGEAVTRTQSADPAAIRAYALSENFELAAF KGQKLTFRAWNGQLRQPILLADGRITLSVSPQDGFLHQRSLLDTLGLDQPESACTAFA Q" gene 359602..360573 /locus_tag="RTM1035_01740" CDS 359602..360573 /locus_tag="RTM1035_01740" /note="COG3391 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01740" /db_xref="CDD:33198" /translation="MSMHHLALATAFAALMTSPALAGKVFVSNERGNTITVVDSETWE VITEFAAGNRPRGITASPDGKHLYVCASDDNVVRVFDTETYQELHTLPSGPDPELFVL HPSGNPLYIANEDDNLVTVTDVNTHTILAEVPVGVEPEGMGISPDGKYVVNTSETTNM AHFIDTTTFEIVQNTLVDQRPRFAQYTADGEYLFVSAEIGGTVSVINPEGGGIEHKIT FEVPGIAPELLQPVGVRVTSDGKKIFVALGPSNRVALVNGETFEVEKYLLVGQRVWQL AFDAEEKYLYTTNGNSNDISIIDVAAEEVVKSVQVGQQPWGVVVVSD" gene 360598..361038 /locus_tag="RTM1035_01745" CDS 360598..361038 /locus_tag="RTM1035_01745" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01745" /translation="MKHMLTAAALALLAMPANAAPLCDDLGFAGLLAKCNRGDEIKVT LASGQPLGEGPITLQSGAYYEMEITADGSAELALTGPEFFRAIWMDEIVINEIEIRPM AIDSFEFDDAGTAEFSFIAIKPGRYHMLIPGTSGDSQRLEFIIQ" gene 361087..361806 /locus_tag="RTM1035_01750" CDS 361087..361806 /locus_tag="RTM1035_01750" /note="COG1131 ABC-type multidrug transport system, ATPase component" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01750" /db_xref="CDD:31326" /translation="MTGLRIDGLGFSYGAKRALENVSFEVEQGAFCALLGPNGAGKST LFALLTRLFTTREGRISVAGHDIASNPRQALARIGVVFQQQTLDLDLSVRRNLRYFAA LHGLAGRAAEMRIEAALERMAMRERADELARDLNGGHRRRTEIARALVHQPAVLLLDE PTVGLDAEARRAITAHVHDLCAGDGLTALWATHLTDEVWPEDRLVILHRGCVLADGIT REIAGQDGLTERFLSLTGAPA" gene 361803..362594 /locus_tag="RTM1035_01755" CDS 361803..362594 /locus_tag="RTM1035_01755" /note="COG0842 ABC-type multidrug transport system, permease component" /codon_start=1 /transl_table=11 /product="efflux ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_01755" /db_xref="CDD:31184" /translation="MRPLLIALAAIVTREALRFARQRSRFVSALVRPLVWLVVFAAGF RAALGLSIIPPYQTYITYETYIVPGLCGMILLFNGMQSSLSLVYDREMGSMRLLLTSP LPRWWLLFAKILAGTAVSVLQCYAFLGIAAAMGIKMPVMGYFYVLPALILGGVMLGAL GVALSSFISQMENFAGVMNFVIFPTFFMSTALYPLWRMAESSMLLRDICAVNPFSHAV ELIRFALYGQFNGMALLWTALASLVFLALALWGYDPGRGLMQRRG" gene 362652..363374 /locus_tag="RTM1035_01760" CDS 362652..363374 /locus_tag="RTM1035_01760" /note="COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR family protein" /protein_id="jcventer:1101493006646_RTM1035_01760" /db_xref="CDD:32379" /translation="MTPKTAHIPGTRPAPAGPGRFTTALIVDDHPLFCDALSMTLKSV AGIGRIDTAESLDQALAMVAENGPPDIIVLDLNLPDVSGLDGLARLRAVAGETPIVVV SSMSESRMVCSVIHAGAAGFVPKHSQRPVFRAAFEAIAAGEIFLPEGVVLTKTQEQPV NDRDEAVERLAHLTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQ TRTQAVLIAQMASFSNVLREAE" gene 363420..364586 /locus_tag="RTM1035_01765" CDS 363420..364586 /locus_tag="RTM1035_01765" /note="COG3287 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01765" /db_xref="CDD:33097" /translation="MDSSLSELMLCDQAIVARAEVPHDACDPIGTLRRAMGDVRLALV LFFVTPKADFEALMVEAARVFVDSRCVGCTTAGEIGMSGYAEGSIVAVGFAADHFHAV LQVVTPLSELDSTACVSQTVRARAWLATQAGQSLPNEFAFLAVDGLSLKEDELVAAIA AGLGPMPLFGGSAADGERFAQTLISCDGVTLRNAAVVCLMRTDCPVRVFRLDHFQPTD RRMVVTDADPARRIVHQINAEVAAQEYARILGCRIDELTPSTFAENPVVVRIGGQHHV RAIQRAEANGDLQFFSAIDEGLVLTLAQSQDMAAHLEHELAGLGAETPPLAVLACDCI LRRTEVQQRQIGPEISRILAAHRVVGFSTYGEQINGLHVNQTMTGVAIYPPIGR" gene 364590..366794 /locus_tag="RTM1035_01770" CDS 364590..366794 /locus_tag="RTM1035_01770" /note="COG0642 Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase" /protein_id="jcventer:1101493006646_RTM1035_01770" /db_xref="CDD:30987" /translation="MSAALIDNSDPLDRQNGKLLKIIEVLMRRVEQVTDDGGAAYAHF ERAVILEDQISERTRDLEHALDLLNDSNAQLAQAIREAERARSDLANAIETIQEGFAL FDSDGRLVLHNSRFGMYMPDLVAELRPGLEFADYVRHASQSRFLELPDMQSRGDWAAR RMQLHQEKHVMFNLNLTGDCWVQVSEHRTRDGQTVILQTDITDIIRLERRERGKLLDD QAQLIRATLEHIDQGVCIFDRSGQLRGWNQNAGSMLSIPISRFRVGIEFDVILRRIGS DFEIEGGLSAHDIAVWVGAQDRRAPLRFYMRSGTHKTLDVFARQMPDRGFVISFSDVT AERAAARALAHANERLEQRVRDRTLELEDALAKAERANASKSRFVAAASHDLRQPLSA ARLYLASLQEELASADHRVLMDKAQRALTSVEDIIDALLDISRLESGHVEVDVTHVPL RRITDQLIDEFAPIAAIKGLDLRYVPCGAMVESDASYLRRVLQNLIANAIRYTPSGKV LVGARRQGRNLRLEVRDTGPGIAPADQDRIFQEFHRLDAHVSAAEGMGLGLAIVDRAC ALLGHPLELRSDLGCGACFSVTVPLVSVARSGPEIRGVGGARARASLEGRIVLLIEND PDLRHALTLLLRGWGADVVEAGNLLEALTQLADLGLSPDAMLVDYELDEGVRGPEVIA RIMARHGVIPARIITGHLVAEMHAHCRAAGLEVLPKPIDPAELEAFLKAAVG" gene complement(366808..367962) /locus_tag="RTM1035_01775" CDS complement(366808..367962) /locus_tag="RTM1035_01775" /note="COG3454 Metal-dependent hydrolase involved in phosphonate metabolism" /codon_start=1 /transl_table=11 /product="alkylphosphonate utilization protein PhnM, putative" /protein_id="jcventer:1101493006646_RTM1035_01775" /db_xref="CDD:30049" /translation="MTMTTLEITLRGAQVLTAEGLTACDLSLSNGRIADTPSGRAVDL DGYMILPGIVDIHGDGFERHLAPRRGAMKDLAQGMIATEAELAANGITTAVLAQFYSW EGGMRGPEFADQVFAALTAVREHVETDLHAQLRFEMSLLDDYAAVEDMVARHGIGYVV FNDHLPHKALAAGKKPQGLTGQALRIGRNPEKHLEYIQGLHARLPEVGPALDRLSTGL AARGVRLGSHDDATAEGRRQARARGMTIAEFPETLEAAEEARAGGDAVIMGAPNLVRG GSHKGNVSAVDLVAMGLVDALASDYHYPSLMRAAFLLADGGVCDLATAWGLISSGPAR LLGLSDRGTLRPGQRADLVILAADTRRVVATMAEGRISYMAGAVARRFIG" gene complement(367959..368678) /locus_tag="RTM1035_01780" CDS complement(367959..368678) /locus_tag="RTM1035_01780" /note="COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="lipase, putative" /protein_id="jcventer:1101493006646_RTM1035_01780" /db_xref="CDD:31273" /translation="MTILAGLILALWTTAARADCVVLLHGLARSDASFVILQEVLEAR GYDVFSPDYPSTEEEIERLARETLPFAVRVCGATRVHFVTHSMGGILLRLWLKDNRPD QMGRVVMLAPPNHGSELVDELGGLELFRWLNGPAGLQLETGPGGVPENLPPVDFELGV IAGTRSLNPYFSSLIDGPDDGKVSVASTRVEGMADHITLPVTHTFLMNNPLVIAQVEE FLAQGQFNHGLTLGDVLLGWR" gene complement(368727..370442) /locus_tag="RTM1035_01785" CDS complement(368727..370442) /locus_tag="RTM1035_01785" /EC_number="2.2.1.6" /note="COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]" /codon_start=1 /transl_table=11 /product="acetolactate synthase II large subunit" /protein_id="jcventer:1101493006646_RTM1035_01785" /db_xref="CDD:30378" /translation="MRATNTKEQDMGTNTRNGGQLLVDCLLALGARHSFGVPGESYLA VLDALHDTAGRLDFTLCRQEGGAAFMAAAYGKLTGRPGICWVTRGPGATNAAIGVHTA MQDSAPMILFVGQVGTDMKGREAFQELDYRAVFGTMVKWAVEIDQVGRIPEIVARAWK TAVTGRPGPVVVALPEDMLTDMTEVPPLSGPGTYPEPEPGAQAVTKARAMLAGAKRPL LLYGGCNWTDAGRAALQEFAAASDIPVVSVFRYQDQFDNHAPVFCGEAGVGMVPNVRR LLAEADVILAVNNRFGENSTDGYTVFDLPEPQQRLIHVHGSDLELGKVYQPELGIQAG PNAFAHALNAGGPVQGDWAAWRAEARAGYEAGFDLPDLPSPVDMGKVTAYLRKVLPED AIITNGAGNFAIWSGRFLKYGAAMRLLAPQSGAMGYGIPAAIAAKVVHPERRVLCFAG DGDFQMTCQELATAAQAGAQPVILILNNGIYGTIRAHQERNYPERVSGTDMVNPDFSA LARAYGFHAERVERTEDFADAFTRACASPTGAVLDLVISTEALTPRMTLSQMRAAGLA KRDGA" gene 370536..370979 /locus_tag="RTM1035_01790" CDS 370536..370979 /locus_tag="RTM1035_01790" /note="COG1051 ADP-ribose pyrophosphatase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase, MutT" /protein_id="jcventer:1101493006646_RTM1035_01790" /db_xref="CDD:31251" /translation="MPSPRLAARAVIVDQGRLLLVNAYADAASTLWCAPGGGVELGTS LPENLMREVHEETGLTIRVGTPCLINEFHAPATGFHQVEVFFRCTVTAGALSEDWRDP EQIVTRRRWVTEAEMGELRFKPDSLARVAFQRGMGYDPLEEIVGP" gene complement(370946..371824) /locus_tag="RTM1035_01795" CDS complement(370946..371824) /locus_tag="RTM1035_01795" /note="COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01795" /db_xref="CDD:34611" /translation="MRLFLLTALTMIAFAANSVLTRMAIAGGDIDAVSFGVIRLISGA VMLGLLCLVLRGGLRLLGPGRAIGVMALLIYFYGFSIAYRGLDAGLGALILFGVVQIT MFAGGLFAREAMPVRRWTGAGLAFAGLAWLLWPGGGPQVSVIHGLLMAGAGIGWGVYS LTGRKSGDALMATAANFIWAAPVGLLVGWLVPKGAEGIVIGPQGVLLAVLSGAVTSGL GYALWYSLLPRLAASVAAVAQLTVPVIAMAGGMLFLGEALSAEFVLASALVLGGVAVS VIPMRPQGPTISSKGS" gene complement(371981..372664) /locus_tag="RTM1035_01800" CDS complement(371981..372664) /locus_tag="RTM1035_01800" /note="COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)" /codon_start=1 /transl_table=11 /product="aquaporin z, Major Intrinsic Protein (MIP) Family" /protein_id="jcventer:1101493006646_RTM1035_01800" /db_xref="CDD:29423" /translation="MQKQLAEFIGTFTLVLFGCGAAVLAGGDIGLAGISFAFGFALIG MAYGIGPVSGCHINPAVSLGAVAAGRMSLTTAAGYIVAQILGAVAGAFVLMTIASGKA DYSLAQNGLGQNGWGPGYLGEYTMTAAFLFEVVASFLFMVVILGATGKGAPAHLAGLA IGIALVVIHLVGINVTGVSVNPARSIGPAVFVGGTALAQLWLFIVAPVIGTVAAGLLF RSGQLDAQS" gene complement(372834..374474) /gene="groEL" /locus_tag="RTM1035_01805" CDS complement(372834..374474) /gene="groEL" /locus_tag="RTM1035_01805" /note="COG0459 Chaperonin GroEL (HSP60 family)" /codon_start=1 /transl_table=11 /product="chaperonin GroEL" /protein_id="jcventer:1101493006646_RTM1035_01805" /db_xref="CDD:48161" /translation="MAAKDVRFNTDARNRMLKGVNILADAVKVTLGPKGRNVVLDKSF GAPRITKDGVSVAKEIELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIVKE GMKAVAAGMNPMDLKRGIDLATSKVVEAIKAASRPVNDSAEVAQVGTISANGEAEIGR QIAEAMQKVGNEGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMVADLEDC LILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAV KAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVGMDMLGRAKKVSITKDATTIVD GAGEKAEIEARVSQIRQQIEDTTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKER KDRVDDALNATRAAVQEGIVVGGGVALVQAAKKLAGLEGVNSDQNAGIAIVRRALEAP LRQIAENAGVDGSVVAGKIRESSDAKFGYNAQTDEYGDMFKFGVIDPAKVVRTALEDA SSIAGLLITTEAMVADKPQKENAGGGGMPDMGGMGGMM" gene complement(374529..374816) /locus_tag="RTM1035_01810" CDS complement(374529..374816) /locus_tag="RTM1035_01810" /note="COG0234 Co-chaperonin GroES (HSP10)" /codon_start=1 /transl_table=11 /product="chaperonin Cpn10" /protein_id="jcventer:1101493006646_RTM1035_01810" /db_xref="CDD:40266" /translation="MAFKPLHDRVLVRRVESEAKTAGGLIIPDSAKEKPSQGQVVSCG DGARKDNGELIAMAVKAGDTILFGKWSGTEVTVDGEELLIMKESDILGVIS" gene 375074..375994 /locus_tag="RTM1035_01815" CDS 375074..375994 /locus_tag="RTM1035_01815" /EC_number="3.6.1.1" /note="COG1227 Inorganic pyrophosphatase/exopolyphosphatase" /codon_start=1 /transl_table=11 /product="putative manganese-dependent inorganic pyrophosphatase" /protein_id="jcventer:1101493006646_RTM1035_01815" /db_xref="CDD:31420" /translation="MTTLVFGHKSPDTDSTGSPILWAWYLNEVKGAQAEAVLLGEPNT EAAFLLRKWDLPKPRIIADVDAGQPCVIVDTNNPAELPANINNADIQAIIDHHKLVGG LETKGPIDITVRPLACTATIMLDLMGDDAAKMPSWAKGTALTCILSDTLEFRSPTTTP HDRAVAEKLAADLGISIPDYAAEMFAAKSDVSAFSDAELLRMDSKEYEVGGKSFRVSV LETTSPAIVLDRKASLMQSMTTVAAEDGVDQVLLFVVDILNEEATLLVPNDLVKTVAE KSFGATVSGDAVVLPGIMSRKKQIIPNLAL" gene 376147..378174 /locus_tag="RTM1035_01820" CDS 376147..378174 /locus_tag="RTM1035_01820" /note="COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family" /codon_start=1 /transl_table=11 /product="2,4-dienoyl-CoA reductase" /protein_id="jcventer:1101493006646_RTM1035_01820" /db_xref="CDD:28795" /translation="MSEYPHLLSPLDLGHVTLKNRVLMGSMHTGLEETRDWNRVAEFY AARARGGVALMVTGGMAPNREGGVFPGAAGLFTPEDITNHRIVTDRVHEAGGLIAMQI LHAGRYAYGKECVSASAIKSPISPFTPKALDEEGIEKQIADIVTAAQRAREAGYDGVE IMGSEGYFLNQFLVTHTNKREDRWGGAYENRMRLPIEVVRRARAAVGDDFIIIYRLSM IDLVPGGSTHDEVVQLAQEIERAGASILNTGIGWHEARIPTIATSVPRAGFAWVTKKL MGKVSIPVITSNRINTPEVGEAVLASGAADMVSMARPFLADAEFVNKAAAGRSATIAP CIACNQACLDHTFSGKLTSCLVNPRACHETELVIAPAEMPKRIAVVGAGPAGLSAAIT AAGRGHQVTLFDRAAELGGQLNMAKVIPGKEEFRGLVDWFGTMVAESGIDLRLGQEVT ADHLDGFDAVIIATGVIPRDPGIPGQDGPNVVTYVDVLRGGAEVGHRVAVVGAGGIGF DVSEYLVHEGISPTEDITLWRTEWGVGDPAEVRGGLAPQGPQPEPAARKVTLLQRKAE APGKRLGKTTGWIHRAALKMKGVEMIGGVNYEKIDAEGLHVSFGEARERPTLIAADTV VLCSGQLSERSLADTLAARGIEAHVIGGADLAAELDAKRAIDQGTRLAATL" gene complement(378181..378624) /locus_tag="RTM1035_01825" CDS complement(378181..378624) /locus_tag="RTM1035_01825" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01825" /translation="MTRIIAITAATFLSLSFPLFAGDTPAPEGAEVYFVNLEDGATVT APVKVIFGLKGMGVAPAGTEKEATGHHHILVNRPPLGEGPDGEQELTVGLPADENHRH FGGGQTEATLDLAPGTHTLQLVMGDLNHVPHAPPVVSEVITITVE" gene 378818..379723 /locus_tag="RTM1035_01830" CDS 378818..379723 /locus_tag="RTM1035_01830" /note="COG0583 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family protein" /protein_id="jcventer:1101493006646_RTM1035_01830" /db_xref="CDD:30928" /translation="MDRLTEMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARL GARLLNRTTRRVSPTEIGLAYYDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDF GVNHLSPVLGQFLDEFPDITVNMVLNNRYVELISEGFDMAVRIGELEDSTLRARKLTE TTKRMIASPGYFQKHGRPQKIDDLNEHKLLHYSSQAGGAVWKLTAPSGEKRQVRTAGG LSVNDGQSLLNAAISGLGIAYLPSFLYSRAMADGLVEDAMPELPLELQGIYAVYPPGR FTQPKVRAFIDFLVHQFADKGPVDW" gene 379906..380445 /locus_tag="RTM1035_01835" CDS 379906..380445 /locus_tag="RTM1035_01835" /note="COG0431 Predicted flavoprotein" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="jcventer:1101493006646_RTM1035_01835" /db_xref="CDD:30780" /translation="MANPKLLLISGSLRKGSYNRMLLAEAAEAFGPAEISDGSLDLPL YDGDLEEAEGVPDAVKHLAQQIKDADAVIIGAPEYNKGITGVLKNGLDWISRVPGAAF KNKPVVVVSASAGRTGGETAQFMTLSCLTQLQARLVPGTAVLIAGAMNAFDDAGKLKD ETSRKLLAERMAALRAEVV" gene complement(380497..382140) /locus_tag="RTM1035_01840" CDS complement(380497..382140) /locus_tag="RTM1035_01840" /note="COG0747 ABC-type dipeptide transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01840" /db_xref="CDD:31090" /translation="MTKDTSHDSVRPVVAKMAEDTRAGKMSRREFVALASTFGASATA AYGLLGLAVPTAAYAEDAKKGGVLRVASRVMDITDPRKYSWTEPGNVARQFCEPLVRW ASDFSFQPMLLEGWEVSDDAMTYTLKVRQNAVWNNGDAFNADDVIHNLNRWCDKAAEG NSMASRMATLIDPDTGRALDGAIERVDDFTIRLNLPRPDITIIAGMSDYPALCVHPSF GDDGDLAKAPIGTGPFELVSMDIGVAAEVKRREDGKWWGGDVYLDGIRFVDFGEDNAS IVAAFDGDEIDINDESTADFIESYDALGLIKQSKTTANTIVARMRADTAPYDSKELRN AIQLACDNAVLLAISINGEGIPAENHHVAPFHPEYAELPAIAADPAKAIEMARAAGHG DTEIEIISIDGDWRTTTTDAIGDQLRQAGFNVKRTVIPGASFWNDWTKYPFSTTNWGP RPLGVQVLALAYKSGEAWNESGHANPEFDALLDEALGVFDADKRREYSAKLQTMLQDS GAVIQPFWRNQALHHTDKVKGVQAHQFREMHYEQVWLDA" gene 382403..383506 /locus_tag="RTM1035_01845" CDS 382403..383506 /locus_tag="RTM1035_01845" /EC_number="4.2.3.5" /note="COG0082 Chorismate synthase" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="jcventer:1101493006646_RTM1035_01845" /db_xref="CDD:41320" /translation="MSLNTFGHLFRFTTWGESHGPALGATVDGCPPGVALDETMLQHW LDKRRPGQNKNMTQRNEPDAVRILSGVYEGQSTGTPIQLMIENTDQRSRDYGEIAKTF RPGHADITYYLKYGLRDPRGGGRSSARETAARVAAGGVARAALEALVPGIEIKGYMVA MGEMELDRAQFDWDAIDGNDFWLPDAAAAPAWEDYLQALRKKHDSVGAVIEVVARGVP AGLGAPIYGKLDTDLAAAMMSINAVKGVEIGEGMAAARLTGSANADEIFMGENGPEFA SNHAGGILGGISTGQEIVVRFAVKPTSSILTPRQSITVDGNPIEVVTKGRHDPCVGIR AVPVGEAMMACVILDHLLLHRGQVGDGPRGHIG" gene complement(384577..385446) /locus_tag="RTM1035_01850" CDS complement(384577..385446) /locus_tag="RTM1035_01850" /note="COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01850" /db_xref="CDD:34611" /translation="MDIRAILMGLGFALMWSSAFTSARIIVSAAPPLTALGLRFLISG LLGITIALILGQSWRLTRAQWRATIIFGICQNALYLGLNFVAMQTIEASLAAIIASAM PLIVGLFSWIFLKERLGKVGIMGLFAGLGGVVIIMGARLQGGMDLYGVSLCLIAVFAL AFATLAVRGAASGGNFLMVVGLQMMVGAVLTGSIGLATEPLVIDWSTRLVLAFLYTTL VPGLAATLVWFLLVERIGATRAATFHFLNPFFGVAIASVLLNEALRLGDLIGVLVIMG GILAVQLSRQGRV" gene complement(385530..386186) /locus_tag="RTM1035_01855" CDS complement(385530..386186) /locus_tag="RTM1035_01855" /note="COG3719 Ribonuclease I" /codon_start=1 /transl_table=11 /product="ribonuclease T2" /protein_id="jcventer:1101493006646_RTM1035_01855" /db_xref="CDD:29474" /translation="MKDQRMRAQVALLLCLLLLPLPATAQSHRAGEFDYYVLSLSWSP TWCALEGDARSAEQCDDAANTGWILHGLWPQYHRGWPEHCQSVHAPPTRAMTRAMADV MGSTGLAWYQWKKHGSCSGLSAADYYALSRAAFDQFTRPEVFRKLTKPVKLPAKVVEE AFLKANPGLEPDMLTITCRAGRIQEARLCLSRDLAPVPCGVDVERDCALRDALFDPIR " gene 386303..387076 /locus_tag="RTM1035_01860" CDS 386303..387076 /locus_tag="RTM1035_01860" /note="COG3820 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01860" /translation="MSKPIMAKATAVWLVDNTTISFKQIADFCGMHELEVQGIADGDV AAGVKGFDPIANNQLTQDEIERAQASPLHKLKLKFNAAAQGEETRRGPRYTPLSKRQD RPASILWLVKFHPELADSQIARLVGTTKPTIQAIRERTHWNIGSIQPIDPVALGLCKQ SELDAAVQKAAAKKAKDGAALTDDERRKLLSTEQSLEADLEPRVPTAMEGLENFTLGQ DYHPEVREKKYDADSFFNLPASDDEDDEDDDQDAGRRRR" gene complement(387144..387500) /locus_tag="RTM1035_01865" CDS complement(387144..387500) /locus_tag="RTM1035_01865" /note="COG3326 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01865" /db_xref="CDD:46845" /translation="MSPLALTLLYLLALNALTLGLFWWDKRCAIERRWRVPESTLLTL CLIGGSLGAKTGQGIFRHKTRKEPFRTSLNAIAVLHIGFLGALVLPEFRAAVMVFLTH ATSYVLGLAATWIPAA" gene complement(387552..388145) /locus_tag="RTM1035_01870" CDS complement(387552..388145) /locus_tag="RTM1035_01870" /note="COG0353 Recombinational DNA repair protein (RecF pathway)" /codon_start=1 /transl_table=11 /product="recombination protein RecR" /protein_id="jcventer:1101493006646_RTM1035_01870" /db_xref="CDD:30702" /translation="MSSTRDIDALIDMMARLPGLGPRSARRAVLHLIRKRALLLSPLA KLMQTVADTARECATCGNIGTTEICDICTNAKRANGQICVVEDVADLWAMERGQAFKG RYHVLGGTLSALDQVGPEVLRIPALLARVDSEAITEVILALNATVEGQTTAHYIADQL DGRVTLTSLAQGVPIGGELDYLDDGTISAALSARKRL" gene complement(388212..388664) /locus_tag="RTM1035_01875" CDS complement(388212..388664) /locus_tag="RTM1035_01875" /note="COG0718 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01875" /db_xref="CDD:42545" /translation="MNTAPLACRLKTADMLKGGNVIQWPALRAKTTGDYSMFKGLGQM GDMAKMMKAAQEMQKKMAALQEEMHTIMVTGESGAGLVKATCSAKGELKALDIDPSIF NSDDKEVVEDLILAAIKDAQAKASARAQEEMGKITEGMGLPKDMKLPF" gene complement(388661..390427) /locus_tag="RTM1035_01880" CDS complement(388661..390427) /locus_tag="RTM1035_01880" /EC_number="2.7.7.7" /note="COG2812 DNA polymerase III, gamma/tau subunits" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunits gamma and tau" /protein_id="jcventer:1101493006646_RTM1035_01880" /db_xref="CDD:32641" /translation="MSDTPTPGYQVLARKYRPETFADLVGQDAMVRTLKNAFQADRIA QAFIMTGIRGTGKTTTARIIAKGMNCIGPDGQGGPTTEPCGQCEHCRAIMEGRHVDVM EMDAASRTGVGDIREIIESVNYRAASARYKIYIIDEVHMLSVNAFNALLKTLEEPPAH VKFIFATTEIRKVPVTVLSRCQRFDLRRIEPEVMIALLRRIADREGAQITDDALALIT RAAEGSARDATSLLDQAISHGAGETTADQVRAMLGLADRGRVLDLFDMILRGDAAGAL SELSAQYAEGADPLAVLRDLAEITHWISVVKITPDAANDPTIGPDERARGLDMATALP MRVLTRMWQMLLKALEEVAQSPNAMMAAEMAVIRLTHVADLPTPEDLVRRLQDAPPNG PGGGGGPRMQANPPQSTHAQAHTHAPTHSGPSGPVSQGAVSPMLATDPEEVLSRYPSF EHVLELIRANRDVKLLLEVEGHIRLANYRPGRIEFTPTPDAPGDLAQRLGSALQRWTG NRWAVTLVNSATAPTIVEARNAAKDAAESDARQHPLVQAVFAAFPRAKIARVKTEKDI TSHAETEALPEVDEEWDPFEED" gene 390562..391050 /locus_tag="RTM1035_01885" CDS 390562..391050 /locus_tag="RTM1035_01885" /note="COG2453 Predicted protein-tyrosine phosphatase" /codon_start=1 /transl_table=11 /product="dual specificity protein phosphatase" /protein_id="jcventer:1101493006646_RTM1035_01885" /db_xref="CDD:32569" /translation="MDDFIIYALRVGGGTLALAPLPGAGGNYAADLAHIRDWKPALVV SLTMPAEMLSAGAETFGNDVQEAGSRWVAFPIPDYGVPDTSQIEAWTKASQDIARALA GGGRVLVHCRGGCGRSGMVALRLMIAQGEDPDAALERLRHIRPCAVETEAQLRWARRA GG" gene 391089..391544 /locus_tag="RTM1035_01890" CDS 391089..391544 /locus_tag="RTM1035_01890" /note="COG0239 Integral membrane protein possibly involved in chromosome condensation" /codon_start=1 /transl_table=11 /product="Camphor resistance CrcB protein" /protein_id="jcventer:1101493006646_RTM1035_01890" /db_xref="CDD:30588" /translation="MQVWRAERQTRVPRLTIDRARATDAGMMSAFLQVAVGGAIGSCL RYGVVLLAQRLAAPGFPVGVLGVNVIGSFLMGLAVVILAQRGAGQISPLVMTGLLGGF TTFSAFSLEAFMLWERGQAMAALGYVGLSVGLSIGALILGVWLARGFFA" gene 391541..392584 /locus_tag="RTM1035_01895" CDS 391541..392584 /locus_tag="RTM1035_01895" /note="COG0564 Pseudouridylate synthases, 23S RNA-specific" /codon_start=1 /transl_table=11 /product="Pseudouridine synthase, RluD" /protein_id="jcventer:1101493006646_RTM1035_01895" /db_xref="CDD:30910" /translation="MSGVQTRIVGPDDGDQRLDRWVRRLFPHVGQVQIEKMCRKGELR VDGGRVKPATRLEVGQSVRIPPLPDTDERPTGALARISPADAKMIQSCVIYRDDHIIA LNKPPGLPVQGGSKQLRHVDGLAEALRFGAEDKPRLVHRLDKDTSGVLLLARTREAAK GLTAAFRHRNTRKIYWAAVAGVPTPRMGTIRFGLVKAPGHGAKGEGEKMLCLHPRDID ATPGAKPATTDYAVIEAAGARTAWMALIPVTGRTHQLRAHMAEIGHPIVGDGKYGGSG QENLGDGWGAQLGGDVSRKLHLHARSLKIEHPVSRAILHITAPLPEHMARTWDLFQWV PSEAPEDPLEDMA" gene 392581..393255 /locus_tag="RTM1035_01900" CDS 392581..393255 /locus_tag="RTM1035_01900" /note="COG0546 Predicted phosphatases" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase, subfamily IA, variant 1" /protein_id="jcventer:1101493006646_RTM1035_01900" /db_xref="CDD:30892" /translation="MSRPLRLVIFDVDGTLVDSQGDILAAMRSAFDRAGEPAPVREVI LGIVGLSLDVAVARLAPQLPGDVHARIVAWYKEAYMGLRAETGVQASSPLYPHALETL KALHAVPETLLGVATGKSARGLDKLLEGHDLRSYFVTRQVADHHPSKPHPSMLRAALA ETGVAPENAVMVGDTSFDMDMAQAAGIAGIGVSWGYHRPEALGAAREIVQDFRALPEA LARIWG" gene 393259..393981 /locus_tag="RTM1035_01905" CDS 393259..393981 /locus_tag="RTM1035_01905" /note="COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01905" /db_xref="CDD:34949" /translation="MSEWKAKRFWTEAGVVEEGDGFGVRLDGRSVRTPAKAVLSVPTR ALAEAIAAEWDAQEGKIDPGTMPFTRSANAAIDKVAHQKSEVAEMLAAYGDSDLICYR AVSPSELVEKQAAAWNPLLDWTESVLSAKLLAVEGVVHVPQDVQAMARLRAHVDALDI WALTAFHDLVSLSGSLVIGFAALDGFYPVKTLWDLSRVDETWQAEQWGSDEEAEEMAA RKQSDFIHAKRFYDLSRKDQSV" gene 394186..395205 /locus_tag="RTM1035_01910" CDS 394186..395205 /locus_tag="RTM1035_01910" /note="COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01910" /db_xref="CDD:47410" /translation="MKKTVFLGALTVAGLAAGASAAATLDDVKARGKLNCGVTTGLVG FAAPDANGVWEGFDVAICRAVAAAVLGDGNAVEFVPTTGKTRFTALASGEIDLLARNT TWTFSRDTDLKFDFVGVNYYDGQGFLVPKSLGVSSAKELDGATVCIQTGTTTELNLAD FFRANNISYEPVPIETNAEGQQQYLAGACDTYTTDASGLASTRAAFENPGDHVILPEI ISKEPLGPLVRHGDNDWGDIVRWTFYALVAAEEMGITSANIGELSAAAGANPEINRIL GTEGELGAMIGLDNDWAKRAISVGGNYGEIFEKNIGEKTPIGLARGLNAQWTQGGIMY APPFR" gene 395325..396539 /locus_tag="RTM1035_01915" CDS 395325..396539 /locus_tag="RTM1035_01915" /note="COG4597 ABC-type amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine" /protein_id="jcventer:1101493006646_RTM1035_01915" /db_xref="CDD:34232" /translation="MTTMTDPPKASFQLSMLIYDTRYRSYTFQFIALVLLMLLLGYLG ANLVNNLAAQGQNISFGFLSNPANYDINQRPIEYDSQSSHLRASLVGVINTLIVAFLG CATATIFGVTAGVLRLSPNWLVRKLMAFYVEIFRNIPVLIWILIIFTVMTAVLPSPNQ FRGDNADASMLFDAFAFTNRGIYTPAPVWGPGSLVVVLTFLASIFGVFAYRRYATKLL YDTGRLLPMGWPSLVILFVPTILIYFVLGQPISLNYPALKGFNFDGGLHIRGSLIALW FALAIYTGAFIAENVRAGIQAVSKGQTEAAASLGLRPNRIMNLVILPQALRVIIPPLI SQYLNLTKNSSLAIAVGYMDVTGTLGGITLNQTGRAIECVLMLMLFYLTISLAISAIM NVYNNSIKLKER" gene 396542..397831 /locus_tag="RTM1035_01920" CDS 396542..397831 /locus_tag="RTM1035_01920" /note="COG0765 ABC-type amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_01920" /db_xref="CDD:31108" /translation="MGRDQFAFVRKHMLPEAPPPATQTGAIKWLRENLFSSPGNALLT VVSAYVVFQIVISATPWFLNGVWDSPSLSACREILDGKTGACFAVLSERWNQLLFGFK YPSELYWRPGLAFVLLFIAAAPVLFGKVFPRKMLIFTGLYPFIAYWLIWGGSLMVPVF ALIGVLVGAVVYSRVVTVNAGVAVIAAFVAALIFWILSGYVTGPMENVLAIEAVASRD MGGFMINLMLGVVCVSLSLPLGILLALGRQSSMPIIKWICVVFIEFIRGVPLITLLFV ANVVLAYFLPPGTNFDLILRVIIMITMFSSAYIAEVIRGGLAALPRGQYEAADSLGLD YAQAMQLIILPQALKISIPGIVNVAVGLFKDTTLVSVISMFDIVGMIRGPILASAEWN GVYWELFGFACVLFFITCYGISQYSQWLERQLRTDHR" gene 397846..398613 /locus_tag="RTM1035_01925" CDS 397846..398613 /locus_tag="RTM1035_01925" /note="COG1126 ABC-type polar amino acid transport system, ATPase component" /codon_start=1 /transl_table=11 /product="glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01925" /db_xref="CDD:31323" /translation="MAAETQMNVSDQVAVEITKMNKWYGAFHVLRDIDLTVYQGERIV IAGPSGSGKSTLIRCINALEEHQKGKITVDGTLLSNDLKNIDKIRSEVGMVFQHFNLF PHLTILENCTLAPIWVRKTPKREAEEVAMHFLEKVKIPEQANKYPGQLSGGQQQRVAI ARSLCMRPRIMLFDEPTSALDPEMISEVLDTMIQLAEEGMTMLCVTHEMGFARKVANR VIFMDQGQIVEQNEPEEFFNNPQSDRTKLFLSQILGH" gene complement(397959..398354) /locus_tag="RTM1035_01930" CDS complement(397959..398354) /locus_tag="RTM1035_01930" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01930" /translation="MRGRMHKLRAIATRCCCPPDSWPGYLLACSGILTFSRKCIATSS ASRLGVLRTQIGASVQFSRIVRCGNRLKCWNTMPTSDRILSIFLRSFDKSVPSTVILP FWCSSSALIQRMSVDLPDPDGPAMTIRSP" gene complement(398718..399833) /locus_tag="RTM1035_01935" CDS complement(398718..399833) /locus_tag="RTM1035_01935" /note="COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein" /codon_start=1 /transl_table=11 /product="acetoin utilization protein AcuC" /protein_id="jcventer:1101493006646_RTM1035_01935" /db_xref="CDD:40927" /translation="MQTPLFIGSEIYRGSSYGARHPLSIPRVPTVIDLCRALGWLPPS QYRISPRAKPQALTAWHSPAYIAALQAAETLGQVSPEIRARHQIGTLSNPVFPEMFRR PATAAGGSLLATELLAHGGVAYNPGGGTHHGMADHAGGFCYLNDPVLAIKAFLAQGLS RIAYVDIDAHHCDGVAAAFHGDPRVLMISTHEAGRWPFTGTVDDRAGGHALNLPLPRA TNDSGFAMALHEVILPAVQAFTPHALVLQCGADAVTEDPLSRLALSNNAHWEAVALLR PLAPRLLVLGGGGYNPWTVGRLWSGVWATLNNTEIPDRLPEPARAILAALSWSRRPAF PDEPLIDTLRDAPRPGPIADDLRASIQHLRARRAAWV" gene complement(399841..400329) /locus_tag="RTM1035_01940" CDS complement(399841..400329) /locus_tag="RTM1035_01940" /note="COG2062 Phosphohistidine phosphatase SixA" /codon_start=1 /transl_table=11 /product="putative phosphohistidine phosphatase, SixA" /protein_id="jcventer:1101493006646_RTM1035_01940" /db_xref="CDD:32245" /translation="MKTLILMRHAKSDWGDPRLPDSARPLNARGCRAATALGHWLRSQ DLAPDQILCSSAVRTQETCTRLKLDTAPDLHDALYLAEADEMLTVLRRATGSLVLMLG HNPGIAEFAALLVAAPPDHERFDDYPTGATLIARFDIADWAALQPGSGTVLQFLTPRD LP" gene complement(400326..400970) /locus_tag="RTM1035_01945" CDS complement(400326..400970) /locus_tag="RTM1035_01945" /note="COG1145 Ferredoxin" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01945" /db_xref="CDD:31788" /translation="MSPLPPALYDLAAAHHLTLSGALHLASGDVPGHQTLVLLSPAEP GFWPHFTATPEYLDGARDPMNRWSIRVITAMADALGATPLFPFSGPPWLPFTDWARRS GRAWPSPVGLLVHDAAGLMISYRGALAFADRFALPPTGPRPCDRCADQPCRSACPVEA LIPEAYNVPACKADLDRPGNDCRARGCAVRRACPLSQFYGRREEQSAFHMGYFG" gene complement(400980..401885) /locus_tag="RTM1035_01950" CDS complement(400980..401885) /locus_tag="RTM1035_01950" /note="COG0548 Acetylglutamate kinase" /codon_start=1 /transl_table=11 /product="acetylglutamate kinase" /protein_id="jcventer:1101493006646_RTM1035_01950" /db_xref="CDD:30894" /translation="MKARDMNRDWIATARTLSEALPYLQRYTGAIVVIKLGGHAMGSD EAMDTFARDVVLMRQVGVNPVIVHGGGPMINQMLEKLAIKSDFVNGKRVTDAATMDVV EMVLSGQVNKRIVAAINGQGGRAVGLSGKDARLITCTPSHPDLGLVGDPSEIDPTILH TLFAAGMIPVIAPLGAGEAGETYNINGDTAAGAVAAALKADRLLLLTDIDGVRDASGQ VVTELSAEQIRQMTRDGIIAGGMIPKTETALAAIDGGVRAVVILDGRAPNATLLELFT EHGAGSLIRGTNTPRVPRSSYPGQS" gene 402014..402745 /locus_tag="RTM1035_01955" CDS 402014..402745 /locus_tag="RTM1035_01955" /note="COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="jcventer:1101493006646_RTM1035_01955" /db_xref="CDD:40206" /translation="MSETKTLLLTGASRGIGHATVRRFNAAGWRVITCSRQPFPAECP WGGGADNHIQMDLSDPNDVIAKVEVLRERLGGRLDALVNNAGISPKGPEGERLDTFST DLRTWGQVFHVNFFASVVLARSLRDELAAARGAVVNVTSIAGSRVHPFAGAAYATSKA ALVALTREMAHDFGPLGVRVNSIAPGEIRTAILSPGTDKLVESIPMRRLGEPDEVANT IFFLCSDGSSYISGTEIEINGAQHV" gene complement(402800..403279) /locus_tag="RTM1035_01960" CDS complement(402800..403279) /locus_tag="RTM1035_01960" /note="COG2335 Secreted and surface protein containing fasciclin-like repeats" /codon_start=1 /transl_table=11 /product="beta-Ig-H3/fasciclin" /protein_id="jcventer:1101493006646_RTM1035_01960" /db_xref="CDD:42446" /translation="MFRRTYLALTAAVLMAGPAFAETKGKDIVDIAAGNESFSTLVAA VQAAGLVDTLKGEGPFTVFAPTNDAFAALPAGTVEDLLKPENKDQLTAILTYHVVPGK VMSGDLSDGMTATTVQGTDVTIGTTDGVTVAGAKVVQADIEASNGVIHVIDTVILPE" gene 403551..405155 /locus_tag="RTM1035_01965" CDS 403551..405155 /locus_tag="RTM1035_01965" /note="COG0069 Glutamate synthase domain 2" /codon_start=1 /transl_table=11 /product="glutamate synthase family protein" /protein_id="jcventer:1101493006646_RTM1035_01965" /db_xref="CDD:28786" /translation="MKHWANPPFVSLFDTLEWRRLRARRVGWARAGYWSFEMGILTQF LEFLALLFVFAIGAVVLAIGVFYVLDRTQPGDAIRRNYPVIGRFRGLFTKLGEFFRQY FFAMDREEMPFNRAQRDWVSHATKGAGNTIAFGSTRNLGVPGTPIFVPAVFPPLDDQF AITAPMQIGPTAAIPYMAKSIFNISGMSYGAISRPAVEALSRGAAKAGIWLNTGEGGL SPFHLVGNCDLVYQIGTAKYGVRDALGNLSDARLREVSDNPCIKMFELKLAQGAKPGK GGILPGEKVNKEIAAIRGIELGKDSISPNRHADINDYGELLDVIGHIRQVTGRPVGFK TVIGSSEAWEPLFEMIIARGPDCAPDFIAIDGGEGGTGAAPMPLMDLVGMPIRDALPR MVDLRDRYGLKDRIRMIAAGKLINPGDVAWAICAGADFVASARGFMFSLGCIQALKCN RNTCPTGITTHDPHLQRGLVVEDKYLKVANYAKSVIKEVETIAHSVGVAEPRLMRRRH VRLVQADGTSIAFNKIRPSYNPDAVL" gene 405231..406145 /locus_tag="RTM1035_01970" CDS 405231..406145 /locus_tag="RTM1035_01970" /note="COG2041 Sulfite oxidase and related enzymes" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01970" /db_xref="CDD:29402" /translation="MAHRWTNTLSDTDVTPEAAFLNRRQMIAGVAAGVGLSLTARSAQ AETEAEALTPNSWDDITTYNNYYEFGTDKGDPARNARTLTVSPWSVTIDGLVDRPGDY AFDEIMAKMTIEERLYRFRCVEAWSMVVPWNGFELADLLDLAGVQSEAKYVAFETVLR PDEMPGVRYPVLDWPYVEGLRLDEALHPLTIMATGIYGRDIPNQNGAPLRLVVPWKYG FKSIKSVVRITLTDKEPPTSWNKANAREYGFYSNVNPEVDHPRWSQATERQIGGGLFS PRVPTLMFNGYADEVAGLYAGMDLKKNF" gene 406145..406747 /locus_tag="RTM1035_01975" CDS 406145..406747 /locus_tag="RTM1035_01975" /note="COG2717 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01975" /db_xref="CDD:45154" /translation="MLRDQINGVARRVPVWAVWLIGLMPGVWTFYLGLTGGLGAEPIK ALERELGEVALQLLILGLCITPLRRHVGVNLIRFRRAVGLLTFSYVAWHLLVWLVLDV QILAQIWADIVKRPYVTIGFAAFLLMIPLALTSNDWSVRRLGPKWRALHRLTYGVAVL GAVHFLWLSKGFQIEPLVYLAVILGLLALRWRPIGQSRRV" gene 409047..409120 /locus_tag="RTM1035_t02992" tRNA 409047..409120 /locus_tag="RTM1035_t02992" /product="tRNA-Ile" gene 409299..409371 /locus_tag="RTM1035_t02994" tRNA 409299..409371 /locus_tag="RTM1035_t02994" /product="tRNA-Ala" gene 413093..413166 /locus_tag="RTM1035_t02996" tRNA 413093..413166 /locus_tag="RTM1035_t02996" /product="tRNA-Met" gene complement(413126..413551) /locus_tag="RTM1035_01980" CDS complement(413126..413551) /locus_tag="RTM1035_01980" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01980" /translation="MLSTRLKKAIYRATGGTEAGTCVFEARYHAFNRKQLIQLSCRST LRPDGFALSPRHCAAWEHMLEAKEAIRGLIEKSVLHPDPTTGRMSVHLHVALAGILAL SLGGAGKSGQQKTSLEQEVTQSIEFLVAGVGFEPTTFRL" gene 413577..414230 /locus_tag="RTM1035_01985" CDS 413577..414230 /locus_tag="RTM1035_01985" /note="COG1309 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein, TetR family" /protein_id="jcventer:1101493006646_RTM1035_01985" /db_xref="CDD:31500" /translation="MPRPTKQFPERGDARTRLLEAARDVIRRKGFAATSVDDLCQSAG VTKGAFFHHFKTKDALGVAAANFWAETTSALFASAPYHEPDDPLDRVLAYLDFRRDII GGETFEYTCLVGTMTQEVHDSAPAIRDACAASIFGHAATLEADIEAARAQRGIEADWT AASLARHTQAVLQGGFILAKATGDSDLARESVDHLVRYVRGLFGLGPNTSEISKGER" gene 414227..414655 /locus_tag="RTM1035_01990" CDS 414227..414655 /locus_tag="RTM1035_01990" /note="COG3832 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_01990" /db_xref="CDD:45048" /translation="MIMTRQQITVETTVSVSVEEAWSAYTTPDDITQWNFANDDWCCP RVESDLRPGGKYIARMEAKDGSMGFDFQGTYEKIEPHKELSLVLGDGRKSRTTFTENS GTTKVATAFDAETQNPTDMQRDGWQAILNNFKAHVDGKEG" gene 414720..415202 /locus_tag="RTM1035_01995" CDS 414720..415202 /locus_tag="RTM1035_01995" /note="COG3865 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="putative DNA-binding protein" /protein_id="jcventer:1101493006646_RTM1035_01995" /db_xref="CDD:33655" /translation="MEHASKVRTCLWFEKGGHDAAQEYVALVPDSRIEAVRENGQPND PMIVEFTLAGAPMMILTAGPHHKLTPAVSISVLTEDQDETDRLWGALTGNGGEAGPCG WLVDRFGVSWQIVPKRMPDLLASDDPGVVVRVSEAMMRMGKIDIAALDAVAAKGPAHG " gene 415195..415731 /locus_tag="RTM1035_02000" CDS 415195..415731 /locus_tag="RTM1035_02000" /note="COG3791 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02000" /db_xref="CDD:33586" /translation="MGETTRIACKCGQTRLEVEGKPIKSVECCCTSCREAAVRMQRLE GAPRTVTDHGTTPFVMYRKDRVRFLAGADTLAGFRLSPEASSRRVIATCCNTPVYLEF KGGHWLSFYSGLWPAGTKPAPTMRTMTSDLPEGSTLPDDIPNAKKHSLGFFAKLFGAW VAMGFRSPKMSNTGEINV" gene 415724..416029 /locus_tag="RTM1035_02005" CDS 415724..416029 /locus_tag="RTM1035_02005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02005" /translation="MSDTDEKIEIESITSPNHVQRVNKAKFMAMRDALLPVLPSEGPG MTVAEAKAALLPNLSQELFPGGEKAGWWLKAVQLDLEAKGVIARDGKRPVRLVRTGK" gene complement(416567..417685) /locus_tag="RTM1035_02010" CDS complement(416567..417685) /locus_tag="RTM1035_02010" /note="COG1609 Transcriptional regulators" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator protein, LacI family" /protein_id="jcventer:1101493006646_RTM1035_02010" /db_xref="CDD:31797" /translation="MQYFEASSKAAIVAEQGSDKFMKFALINAKDIMQRPTTKDLAKA AGVSRATVDRVLNNREGVKKHTVDRVNKAIEELGFVRNIQAANLARSQRYRFVFALPR SGDLFLEEIIRHINEANETFAADLIWCDAEHINENDPHSISAFLATLDASETTGVAIM APESPQVRDAIYRLQQRGVAALPFIADQSSMEEHWVGTNHTAAGATAATLIGRFSARA HGAVLVISESMRSRDSLERRIGFDAELNRYFPNLTALPSLETYGDEARAEQVIQNALK NNPDLVGVYILSSEARIPLTILNGIGGTSSLIKIVHERTPFTETALREGKLDAVIAQD PGHLVRSAVRKLKAITDKRVAKGSQERIRVEVLMRTNI" gene 417878..419131 /locus_tag="RTM1035_02015" CDS 417878..419131 /locus_tag="RTM1035_02015" /note="COG1653 ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="probable sugar ABC transporter, substrate-binding protein" /protein_id="jcventer:1101493006646_RTM1035_02015" /db_xref="CDD:31839" /translation="MAEDLTLCWAAWDPANALIELSKDFEAQSGHTMSFEFVPWTSFA DRMLNELNSGGQLCDLMIGDSQWIGGGAENGHYVKLNDFFEANGISMDDFLPATVTGY AEWPKGTPNYYALPAYADVVGWTYRKDWFERPELQAEFMEKYGRALDVPASLEELRDI AAFFQGREIDGTTVYGAAIYTERGSEGITMGVTNVLYNYGFEYENPEKPYDLEGFVNS AGAVAGLELYKEIYDTGTPPGSSNWYMGENIDAYRSGQVAMQMNFAFIWPGVEADENV GGGKSGYFPNPAGPAGQFAQLGGQGISVVAYSQKQDAALEYIKWFAQPEIQQRWWDLG GAPALRAVVEAEDFAASQPYAQAFLDSMAIVKDFWAEPAYADLLIPMQERMHNYVIAG EGTAQEALDGLVRDWTEVFEDEGKL" gene 419260..420207 /locus_tag="RTM1035_02020" CDS 419260..420207 /locus_tag="RTM1035_02020" /note="COG1175 ABC-type sugar transport systems, permease components" /codon_start=1 /transl_table=11 /product="probable sugar ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_02020" /db_xref="CDD:31368" /translation="MTLPPMERAAAKTPDGIAKRIRGLSDRTIAWIFVAPTIFLLLAV NIFPLIWTIRLSFTDFRVNRPNNDVEWVGLRNYERILSDPDVWNTMQATAHFLIWTIA LQVLIGFTLAYLINKKFRGNDMWTTIIVFPMMLSPAVVGNFWTFLYQPQIGLFNYVVA FFTGADPASFSMIGDVNLAPWAIIIADTWMWTPFVMLICLAGLRSIPDSIYEAAECDR ASKWRQFWTITLPMALPFLMLAVLFRGIENFKMFDLVVQLTGGGPGNTTTLTSIDLKR EAFEKWRTGYSSAYAVILFVTVFGLASIYVKALNKVKER" gene 420204..421142 /locus_tag="RTM1035_02025" CDS 420204..421142 /locus_tag="RTM1035_02025" /note="COG0395 ABC-type sugar transport system, permease component" /codon_start=1 /transl_table=11 /product="probable sugar ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_02025" /db_xref="CDD:30744" /translation="MSFSVTEPTKGTKWFAGILVVTYACITLVPLLWIIATGFKSPTD SIAYPPVVVFEPTLEGYVNLFTDRTRATEDMLEAAGPAETWYDQIARDRGTVISGPSR YGERFLNSVIIGFGSTALCMILGTMAAYAFSRFKVPLKDDLLFFILSTRMMPPIAVAI PIFLMFRTLGLNDTHLGMILLYTAVNLSLSVWLLKGFIDEIPIEYEEAALIDGYTRFQ AFYKVVLPQAATGIASTAIFCLIFAWNEYAFAVLLTSGTAQTAPPFIPTIIGTSGKDW PAVAAGATIFLVPVMVFTILLRKHLLRGITFGAVRK" gene 421139..421327 /locus_tag="RTM1035_02030" CDS 421139..421327 /locus_tag="RTM1035_02030" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02030" /translation="MMNIIYRMLRFRRGPWEMLATILIALGVTMLMQPFAIGLYSYSF IVTLVGTVMFIIVSHFPE" gene 421354..422427 /locus_tag="RTM1035_02035" CDS 421354..422427 /locus_tag="RTM1035_02035" /note="COG3839 ABC-type sugar transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="probable sugar ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_02035" /db_xref="CDD:33631" /translation="MRKDFGAFNAVKSSTFTIEDGEFFMLLGPSGCGKTTTLRMMAGL ELPTSGEIYIDNEEVGMKPASQRDIAFVFQMFALYPHMNVGKNISYPLRSQGMPKVQI KKKVDEIAEILGITDILNKPVGGLSGGDRQRVALGRAIVRDPKAFFMDEPLGALDAEF REHMSKELRALHDRMSATTVYVTHDQLEAMQMGDKIVVMNHGVVEQFGVPQDIYDWPA TKFVAAFIGSPPMNFLEFNGMVGKGGTEVRLNDVALAVPASLDGANGALTFGVRPEHV RLDDAAPYRGRVKATEYLGTTQIVTLETANGEVKARVASSDRISAGDQTGLAFDARTI TLFNADTGAALRSQANQGVLFRG" gene 422468..423415 /locus_tag="RTM1035_02040" CDS 422468..423415 /locus_tag="RTM1035_02040" /note="COG3839 ABC-type sugar transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="probable sugar ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_02040" /db_xref="CDD:33631" /translation="MALDEVTMTIPDGAFVVLLGPTGAGKTTTLRMVSGLDKPDSGSV TIGGRDVTALTPAQRDVAMVFQQYSLYPHLTVRQNLEFPLKSPILKTPQAEIDRKVGA VAEVLQISHKLDNKATALSGGEMQRVSIGRALVREPSVYLMDEPLSSLDAKLRSDLRI ELKSIQADSGATMLYVTHDQTEAMTMATHVGVLDSGKLVQFGSPREIYENPVSVYAAS RLGQPRINVLPSDVFGGAPRGAAQIGLRPEQIVQGEGEDSFVQRVEHLGDQTRLHLKF KSHDLITVTDAHTTLKEGDIIQIRPNNPFFFDASGARIS" gene 423426..425045 /locus_tag="RTM1035_02045" CDS 423426..425045 /locus_tag="RTM1035_02045" /note="COG2376 Dihydroxyacetone kinase" /codon_start=1 /transl_table=11 /product="dihydroxyacetone kinase protein" /protein_id="jcventer:1101493006646_RTM1035_02045" /db_xref="CDD:42689" /translation="MKHFINEKHDMVTEAIDGTIAASGGKLTRLDGYPHIRVVVRSDW DKSKVALVSGGGSGHEPAHAGFVGEGMLTAAVCGDVFASPSVDAVLAAILAVTGTAGC LLIVKNYTGDRLNFGLAAERARAFGHKVSVVIVDDDVALPSLPQARGLAGTLFVHKIV GAMAEGGANLEACTIAAKRVIAGSRSIGLSLDTCSVPGSLKEDRIPFGMAELGLGIHG EAGVAQVASAGAADAIAKMIEALVADMPRTPHVALINNLGGASCLEMAILTNNLLGSE IGQYIRLVVGPSAMMTALDMHGFSISLCELADGDEGFLKAPAKVTGWPGCNSVTAPAV LPLPDGLTPIRAPASAHAPTREFLTDCCKVLIAAENDLNLLDAKSGDGDTGSTLAGAA RALIDAMDRLPLADHTQLYRAIGLELSQTMGGSSGVLLAIFFAAAGDASSSGMTMRDA LMAGLDRMRQIGGANPGDRTMVDALLPALDALSAGLPQAAAAARKGAKYTATLTSAKA GRASYINAEQLEGHIDPGAEAVARLFEHLAS" gene 425644..427107 /locus_tag="RTM1035_02050" CDS 425644..427107 /locus_tag="RTM1035_02050" /EC_number="1.1.1.49" /note="COG0364 Glucose-6-phosphate 1-dehydrogenase" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate 1-dehydrogenase" /protein_id="jcventer:1101493006646_RTM1035_02050" /db_xref="CDD:42737" /translation="MVSRVIPVSSFDLVIFGATGDLAQRKILPGLFRRFSVGQMPRDA RIIATARSEIDTDMFRADLRTSLAEFAPCSSGDAEMLDQFLATIVYIHLDVMSQEGWS ELVGLLRGSAVRAFYLSVSTSLFGTIASRLSSYGAVTPESRIVVEKPFGNDLAIARAL NADLRQGFEESQIYRIDHYLGKETVQNLMALRFANALWEPLWNSTHIDHVQITVAESL GVEGRGEYYNRAGAMRDMVQNHLMQLLCLTAMEPPSRFEPNAVRDEKVKVIEALAPAK PQEIVRGQYRDKEGQGSYRAHAGDPTSRTESFVAMKVAIANWRWAGTPFYLRTGKRLR ARTSEIAVVFREPPHMIFPEMENRRSNQMIIHLQPDEGITLHNTIKEPGPGGFRLAEV TLDMTFANALGGQTDSQDAYERLIMDVIRGDQTLFMRGDEVEAAWAWVDPIIARWEEA RHAPEPYDAGGSGPEEALMLMHRDGRRWREIGRVEDK" gene 427104..428912 /locus_tag="RTM1035_02055" CDS 427104..428912 /locus_tag="RTM1035_02055" /EC_number="4.2.1.12" /note="COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase" /codon_start=1 /transl_table=11 /product="phosphogluconate dehydratase" /protein_id="jcventer:1101493006646_RTM1035_02055" /db_xref="CDD:40995" /translation="MTLNSTIEAVTDRIIARSSKTRDAYLKRMRAAQSKGPARSHLAC SGQAHAYAAAESDKARLVEDVSGNLGIVTAYNDMLSAHQPFATYPDIIKHAVREIGGT AQVAGGVPAMCDGVTQGEAGMELSLFSRDVIALAASVALSHNTYDAAVFLGVCDKIVP GLLIAAQAFGHLPAVFLPAGPMTSGLPNDEKSKVRQRFAAGEVDRAALMEAEMAAYHG PGTCTFYGTANTNQMLMEFMGLHLPGASFVTPNTPLRAALTAEGAKRALSLSALGESY TPVCDILSEKAFVNGIVGLNATGGSTNLLIHLIAMARAGGIILDWEDFSDLSEATPLI ARVYPNGLADVNHFHAAGGLGYMIGELLGAGLLHPDTKTVAGEGLEHYTTEPKLADGR LSWQPGARKSLDDRILRTVADPFQLTGGLARLSGNLGTAVMKVSAVAPEHQIVQAPAR VFHDQNDVKAAFKAGELTGDLVVVMRFQGPKANGMPELHSLTPILSILQGRGQKVALV TDGRMSGASGKVPSAIHVSPEALDGGLIAKLKDGDILRVDATTGVLQCLTEGVGERPA AAPDLSSNHHGLGRELFAAFRRSVGTADKGASIFGE" gene 428916..429569 /locus_tag="RTM1035_02060" CDS 428916..429569 /locus_tag="RTM1035_02060" /note="COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase" /protein_id="jcventer:1101493006646_RTM1035_02060" /db_xref="CDD:31143" /translation="MTLSPKNASRQTRALCELAPIVPVLVINDAAAARPLAEALVAGG LPVLEVTLRTPAALDAIRAMAQVRGGHVGAGTLVTPDDVRAAKAAGATFGVAPGATEK LLAACEAEGLPLLPGAATASEAMALLERGYDMLKFFPAEAAGGVAALKAIGAPLPQIS FCPTGGINPDNAPSYLSLSNVVCAGGSWVAPEALVAMGKWDEIEELAREAAKLRAAP" gene complement(430040..430414) /locus_tag="RTM1035_02065" CDS complement(430040..430414) /locus_tag="RTM1035_02065" /note="COG2246 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02065" /translation="MSRQFLSFAGVGAVATAAHYLTLLALVEGSLAHPAPASAAGAAV GALVSYALNYRLTFAAQSPHRKALPKFLAIAVFAMILNFVLMHALITLLSLPYIAAQV AVTGVMLLLTFNANRNWTFGRE" gene complement(430411..432648) /locus_tag="RTM1035_02070" CDS complement(430411..432648) /locus_tag="RTM1035_02070" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02070" /translation="MIRPDPFPQGGYRLAAVFIATAWLVFCWPWLGGGQIIPHDAKNH FYPMVRFLALAWHSGESPFWSPYHFGGFPMVADPQSVIFTPSFWPAVLAGPAPSMRLV DAIHLLHLLVMGLAILGFARLRGWRVEAGAAAAICFMLSGALTVRLEHLLMTVSMMWL AVCLWRLEAVLTHGGIWRGIAFGVALGLMLIDRNHVAYLAAWFLGFYWLSRSWPGSGQ TVPLRHQTPVILGGITALCLAAIPILLLLQLAEISNRPSFDYEGASLQSLHPAALATL FMVDIFGPLDRAGAYWGPASHAWGGQFFVHRGMLHGYVGALALVLILWHGIGAGRLWR REALVFTLLAILFLIYALGHYTPVFEWLYDTVPGIDLFRRPADALFLFGASAALLTGA LMNDMLRAPSRLSTVGSLAALVLTISGAVFVGLLGAKQGHLADLGLPAARALAYSAIL LALLIMAVRVRGTLQRSLLAAILLISAVDLITAHSNIRLNASLPQFYDQLETPAAYDH IARLAALSKATDPSGAPWRVETIGLGASSQNIGQAAGIEALLGYNPIRLRAFDSLIAP KHQNNASANRRFGTAMTSYDSVMADQLGLRYIMTGKPVEKIDGTLPQDALQEVAVIPY LDRNFYLYENRDAKPRAVLLPATDAGATPGPQPRITRYTNVVVEVSAECTSPCRLVLH DFAYPGWTATANGVPVPLVIQDGLFRAVDLSVGQNEVTFTFSPLALENLQAALIGVLG GEGTP" gene complement(432645..433754) /locus_tag="RTM1035_02075" CDS complement(432645..433754) /locus_tag="RTM1035_02075" /note="COG0463 Glycosyltransferases involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02075" /db_xref="CDD:30811" /translation="MNDNEFVFEQDIPLIDTTPAIQNGSARSAASLSVVVPAYNEAGN IRAFLDRLLPCLERTRAACEIIFVDDGSADKTPVCVAEQCALDARIKLIRLSRNFGKE AALNAGLSHAIGDLVIQIDVDLQHPPETIDAMIKEWSLGADIVYAKRNSRQDESWMRR FLARSFYRVFGLICDVKLMEGAGDFILLDRKVVDALMQLPERGRFTKGLYAWVGFRRK AVPFDVAPRAHGQSGWPLLKLARFAMDALTAFGSLPLKVWTYIGLLLAFASTLYGAVI FVQKLAFGIDVPGYASLMVAVCFLSGVQLLGLGIMGEYVSRIFAEVKQRPMFLVQERI GFDQRPYMPQTSLQMPPSVVAPSKAQSRGLDTFVS" gene 433895..434785 /locus_tag="RTM1035_02080" CDS 433895..434785 /locus_tag="RTM1035_02080" /note="COG3394 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02080" /db_xref="CDD:44700" /translation="MDKIIETPMTWGGRIHLCADDFGLNAAVDEGILDLVHLGRLTAV SCMAGGVEITRDIPRLLAAVSDAPRPVQIGLHVTLTEYTTLGPIRGLAPECALPGIGR VMRQAYLRRLDVPAIRMEIDRQMACLSALMGRVPDFVDGHQHVHLLPGIRDAVAASWK DWNVRPGWVRYCGAPERDLAQLPSAQFKSRVLSLMSRAAAPSHDEAGMVTNPRFFGVT EFSPEVPFGPRMRRWLSLANSGESGALIMCHPGRASVPAAGDPPDPIHLHRPQELAYL ASEAFLTDLAETGVATRFGL" gene 435448..435549 /locus_tag="RTM1035_02085" CDS 435448..435549 /locus_tag="RTM1035_02085" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02085" /translation="MDDLLECDHVFVLELPFAGHVGVFIPARVAEAE" gene complement(435573..436490) /locus_tag="RTM1035_02090" CDS complement(435573..436490) /locus_tag="RTM1035_02090" /note="COG0583 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family protein" /protein_id="jcventer:1101493006646_RTM1035_02090" /db_xref="CDD:30928" /translation="MKIGLRHIRYFLVLAEDLNFRRASEHLHISQPALTRTIQHLEAE LQVTLFDRSQNFVRLTDAGRAFREGGQRVLNGVEATIDLTRRVSIGEAGALRVGYTDF AIADALPELLKQFHQRHPGITVRPHHGVTAAQLQQLRDDKLDIGFVTGPVRQPGFRSR VVQTDRPICIVPEGHRLASRSSVELADLADEDFVHGPTEAWAHFYDYLFPHCRKAGFQ PRIVQEAFNSVGILGLVSCGMGITILTESIYDFATGGLVPLPISDIDDVMVTEAVWAS ENLRLPTQHFVDFLEQSDSHRLQGAQRLK" gene 436585..437601 /locus_tag="RTM1035_02095" CDS 436585..437601 /locus_tag="RTM1035_02095" /note="COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter- DctP subunit" /protein_id="jcventer:1101493006646_RTM1035_02095" /db_xref="CDD:31825" /translation="MQPGAIMSHSPFQIFAGPLAALTVVAGTASAQDVTINLGYAASE TSTYAVLADKFEELVEEYTEGSVDVKVRCCGQLMGEDEAFKAMQLGTVDMFVITGNNI SPHFPLMDAFVLPYIFQNKEHAYRVLEGEVGRDFAAQLQAATNVHLLTYGFVGDRDFY NSRSPIASVEDMAGLKVRVPKNQVMIDTYEEFGAAPIPLPWADTPTALQTGTVEGADN GTSFIKSQKFYEIMPYFTVLEHFTYFSPLFASDRVMNKLDEAQRDAVMRAAAEAGVYH RKEMAAQTDEIRAFLTGEGGMETTNVDRSGFIEAGLRVQDRYAADKGDDFIALVNAIR AEAE" gene 437675..438157 /locus_tag="RTM1035_02100" CDS 437675..438157 /locus_tag="RTM1035_02100" /note="COG3090 TRAP-type C4-dicarboxylate transport system, small permease component" /codon_start=1 /transl_table=11 /product="Tripartite ATP-independent periplasmic transporter, DctQ component" /protein_id="jcventer:1101493006646_RTM1035_02100" /db_xref="CDD:44203" /translation="MLSKLDRYFEEVICTICLTVVVGSVLLQVILRYFFSTAAAWAEE TAVYGMIFAVYLGATMAVRERAHIRITLLVSRLPRALQVGAVVLADALWAGFVIFMIV QTTIYTQLLFNVTYMTPGLGIEQRWVQMIIPMAFGLMLFRILQVYWRWGRDGWKDLPL " gene 438154..439449 /locus_tag="RTM1035_02105" CDS 438154..439449 /locus_tag="RTM1035_02105" /note="COG1593 TRAP-type C4-dicarboxylate transport system, large permease component" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter- DctM subunit" /protein_id="jcventer:1101493006646_RTM1035_02105" /db_xref="CDD:31781" /translation="MNGPLVMAAAFVFAMAIGVPIPFAAGLATVAGLLIADIPLTLMA QAAWTAFEPFPLVTIPLFILAGQLMEQGGMSEKLVTIAKRLVGAYKGGMGLVTVVACM FFAALSGSGPATTAAIGSITIPAMQKEGYRSRFAGAIAASAGALGSMIPPSNLLIIFA LVTDVSIPRLFLAGILPGLILGLMLMVVVFVISWKNGYGGTEERFRWGPLLWALWDGK WAVFAPILILGGIYAGIFTPSEAAAVAVAYGLFVGLFVYKGLTWVKLLHAFKFTAIVI GTVLFILGSTKAFGQLVTIFDIPSDILTLFQGLIAYPWLIMLFIGIFYILVGMWLESI PQIIIFTAVFFPLVTSLGIDPVVFGIFTVMTCEIGFLTPPIGVNLFVAARIGKISIED ISVGVLPLLIPYILMILILVFFSDWVTWLPNLVYGPQLR" gene 439454..441556 /locus_tag="RTM1035_02110" CDS 439454..441556 /locus_tag="RTM1035_02110" /codon_start=1 /transl_table=11 /product="probable N,N-dimethylformamidase large subunit" /protein_id="jcventer:1101493006646_RTM1035_02110" /translation="MNEVPLTGYTDRLSARPGEEIAFKVSSTSGGRYRAWLARSTCAD PNPDGMGITEEDASAWFAPRDLPARHQPFFPGSYGLSDAAITLPAQGNVTLSATIQPT HLNGGDQAVLSCGPLTMGLNAEGCVFVAAGAARVTSPVPLPTHRWAQLEVRLTEGRAT LVQTVLGHHSCETHEASGALPRAAITAPVVLAAGWADTRATTFFNGKIEGPTITGPDG LIAVWDLATAIPSARVPALTGPALSLVNFPTRAMTGSQWDASEMCWRHKPEHYGAIHF HEDDIYDFGWQTDFTLTVPEGMPSGVYIMYIEGDHGSDALPFYICPPKGIRRADLCVL IPTFTYVVYGNHARPDYDPAWQSRMRDWGAYPHNPAEYREYGLSTYNTHSDGSGICHA SHRRPLFNLRPGFLTFGATGCSGLRHFAADSHLISWLHAKGLEYDIVTDHELHAEGAE VLAGYKAVTTTTHPEYHTAETLDALRDYRDSGGNLLYLGGNGFYWRIARHTENDSLLE IRRAEDGIRAWAAEPGEYYNAFDGTYGGLWRRSGRAPQALVGIGFAAQGEFYGAPYQR MCFDPKFDWLFEGVTEDLFGDYGFSGNGAAGFELDHVDHRIGSPLDHVLLARSAGDNQ AFMLVPEEQLTHLTNLTGGSEEDAKHADLIYFDLPKGGSVFSVGSITFCGSLPWNGFD NDVSRLLDNFLRCKLGQQ" gene complement(441757..442950) /locus_tag="RTM1035_02115" CDS complement(441757..442950) /locus_tag="RTM1035_02115" /note="COG3210 Large exoproteins involved in heme utilization or adhesion" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02115" /translation="MLEVFMAITSNVLDGGIAFNEWHSISFTTDYNGDGQANGGVEAY VELVNTSASSIDISGYQYFHINNGLVSQLAHTVPGGTTLAAGETYTIVSNNGSLTATM PSNITGQGAVADIAMNQSADVNLFLANPEGDFIVLQENGGNAFLGDDIIAAGLNPANQ VGIDVVTAAGADQSIARVTDGEDTFETQTPSPGEPNCFFAGSRIATPSGMKAIEELAV GDQIMTASGRIVPIVWLARQTLSTKFGRPDALPVRIMAGALGEGLPIADLTLTADHAV VIDGVLVNAGVLVNGTTIVTVPLTELENSYTVYHIEIDEHDVILAEGLPTESFVDYTG RDAFDNHAEYLAMYGGDRLIREMALPRITARRLMPPSLRALLGINHVTADSPETSRLN TRCAA" gene 443342..443755 /locus_tag="RTM1035_02120" CDS 443342..443755 /locus_tag="RTM1035_02120" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02120" /translation="MFQAALADGLGFEIFPLMQDGFLADKVDVDGCDVVWHHVIALAL FLSPNRRFELGEGALQTLFQAGGTPAEHALPVSGLELTRHWQLARAYDGQIVLWQSWR RRTGAKALWRSTLRSHTVMLSCLRRSPGPQRARKA" gene 443816..445693 /locus_tag="RTM1035_02125" CDS 443816..445693 /locus_tag="RTM1035_02125" /note="COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system" /codon_start=1 /transl_table=11 /product="probable two-component sensor histidine kinase protein" /protein_id="jcventer:1101493006646_RTM1035_02125" /db_xref="CDD:33926" /translation="MVQGIAQAAQMRRHSGFLVWLVLGLIVLWGGGALVHAQATRVFL NEAAGRAEGTLQLATTALDGYLERFERLPPLLARQQPILDLAEAPDDPARVDAANRFL RDVTGVLGASDIYFMDTTGLTRAASNFDLPRSFVGGNFAFRPYFSDAVASGAGSFYAL GTTSRKRGYYFGAPVRNGDTLLGVVALKIDVESVEAAWSGADYHVIVTDPKGVVFLSS NPAWRFGMTRPLTSEGQDLLETTRRYADSPLFDIPLRAQTTAQGHVLWEISLSTLPGA QGQGEYLLASAAMPEADWTLTVMQNTAPARAQALTFTAGAVLALALIGMMVAVVRQRR ARLRDLLVMQATAKVQLEARVAERTRELADVNEALGAEVAERRLVEVNLRRAQDDLVQ AAKLAALGQMSAALGHEVNQPLGALRNYAENAVALLTRDRKAETQTALERILDMADRI SAIARRLHTFGRRPGQQLGAVDVTEAIEAAQEIAGPRLRQVGATLSVDIAPGLSLVRA GPVRLQQVLVNLLTNAADAVADRAERRILLTARDEAEAVVLRVEDSGTGVPPDIALRI FDPFFSTKGVGNGLGLGLSITYNIIKDFDGAIALVPGTLGGAAFEVRLMSAPKQDLAA E" gene 445690..447066 /locus_tag="RTM1035_02130" CDS 445690..447066 /locus_tag="RTM1035_02130" /note="COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains" /codon_start=1 /transl_table=11 /product="putative two-component response regulator protein" /protein_id="jcventer:1101493006646_RTM1035_02130" /db_xref="CDD:32386" /translation="MSLPVFIPRVLIVDDDADLRASTVQALEIAGAAVQDLSSAERAL DFISFGFPGVVLSDIRMPGMDGLTLMSRIHEIDREIPVILMTGHGDVQLAVRAMREGA HDFIEKPFSASQMTELVARALSFRRLVLENRVLRAAVGQADDLEQRLIGRSNAMIDLR RRIRTIGPAETDVLIVGETGAGKEVVARALHDLSPRARRPFVVIDCAAIPAPLIESEL FGHEQGAFAGAMRARTGKFEHASGGTVLLDDIAALPPPLQGKLLRVVEDRVVTRLGSN EAYTLDIRIIATARVPLIGEVDAGRFRADLLYRLNVVTLDVPPLADRREDIALLFLRL LAEAAARHRVDTVPEVPPALLANIAAREWPGNVRELRNAADRFALGLGLQTDDEKTPA PQRLADRVAAFERREIEAVLAANGGSLKPVYEALGLSRKSLYEKIQKLGIDKTAFILD AEGRDQDG" gene 447367..448245 /locus_tag="RTM1035_02135" CDS 447367..448245 /locus_tag="RTM1035_02135" /note="COG2358 TRAP-type uncharacterized transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="TRAP transporter solute receptor, TAXI family protein" /protein_id="jcventer:1101493006646_RTM1035_02135" /db_xref="CDD:32505" /translation="MTIGTASQGGTYFVYGNGFASYIAETLGVAATGEVTGGPVQNVT LVETGDHLMGLVTMGPAYDAWNGKSELAPGLEHKSIRALFPMYQTPFQVIALKSSGIN SVSDLAGKRVSVGPAGGTPGTYWPLFMQALDVEATISNAGASDAAGQLQDGLIDAFAF AAGMPISAFAELAASQDVVMFGLSEEELPKVLAAYPAMAPLTIPAGTYAGHDYDQPTV ALWNFAIAHQDMPESLAYEITKLAMGNSDRMIQIHAAAKETLSENWDKNTFMPFHPGA VRYFEEIGITIPDTLR" gene 448309..450567 /locus_tag="RTM1035_02140" CDS 448309..450567 /locus_tag="RTM1035_02140" /note="COG4666 TRAP-type uncharacterized transport system, fused permease components" /codon_start=1 /transl_table=11 /product="TRAP transporter, 4TM/12TM fusion protein" /protein_id="jcventer:1101493006646_RTM1035_02140" /db_xref="CDD:34284" /translation="MGWTSCQRQFFMTTQTEKAQQDTAAQNQASIADGVDAEIYTSNQ RKPVGLAAKIAVILCIAYTLFHVGVMNGLHDRLTDLLGIGSVDLTEPWRYRLIHVGGG LALGFLLFSSTLFSEERSGTADPRRLLAVLPGAALVALAFGQAALFWTTGMAVDQAAA ANAYSMTFGLPLVVGTFWLIVVGWFWPDRRRATFDIADLFLALAAITVAMYLIYHAPF LRLRGGTALAKSADMYAALAGTVLILELARRLAGLALVIIASIFVLYAFVGPWLPGIL EHRGYSMTRFFSYVYTDQGILGPTTAISSTYIILFVAFAAFLQASRVGEYFVNFAFAV AGGARGGPAKVAVFSSGLMGMINGTSAGNVVATGSLTIPLMKRVGYKPQTAASVEAAA SSGGQILPPIMGAGAFIMSEITGIPYAEIVTAAIIPAMLYFASIYFNVDLAAQKFGMK GLPRSELPRFDKLARQAFLFLPIFILIGALFMGYSVIRAGTLGMASAAVVSWLTPYPM GPRQILFAFEIAAKMTLQLVAVCAAAGVIVGVIALTGIGTRFSSMLLGLADQNQAIAL FFAMIVSIILGMGMPTTAAYAVAASVIGPGLVQLGIPPLTAHFFIFYYAVMSAITPPV ALAAYAGAAIAQSDPMKTSVESFRIGLAAFVVPFMFFSSPALLMEGSWFEIIHVVISA LFGIYLLSSAVQGWFFGLLSMPLRAVLLIAALSMIAQGWFTDAIGLSVAIGVWLVQKR FVDPNKVIRGAD" gene 450674..451741 /locus_tag="RTM1035_02145" CDS 450674..451741 /locus_tag="RTM1035_02145" /note="COG2008 Threonine aldolase" /codon_start=1 /transl_table=11 /product="Threonine aldolase" /protein_id="jcventer:1101493006646_RTM1035_02145" /db_xref="CDD:32191" /translation="MYRQNLFTEMAGSMHDFYSDTQSRPTRAMREAALDTPLGDERHD ADPSTLELCARVADMLGMEAAVFLPSGTMCNEIAIAVHTSPGDEVICTRESHIIFAES GGPAALSGVMMHPIDGKRGMLTQEQLSDAIRPRSAHAPRSRLLVAEQTANLAGGAIWP LDQLNTVASAAKAAGLATHLDGARLLNAQVATGIPARDFARGFDSAWIAFTKGLGCPV GAVLAGSRGFVEEAWLLKRRWGGAMRQTGVLTAMCLYALDHHVERLAEDHLLAQSIAA RLADLPIIASVMPVETNIVIADLDPQAPDARETSRLLREKNVTVTVVGNRRIRMVTHL DVGPMDADALISALGAISRGR" gene complement(452129..452794) /locus_tag="RTM1035_02150" CDS complement(452129..452794) /locus_tag="RTM1035_02150" /note="COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, LuxR" /protein_id="jcventer:1101493006646_RTM1035_02150" /db_xref="CDD:32379" /translation="MSAEGLENREENTMNNQEEPTLSILVVDDHKLVSEAVANFLSSS SDFNVALCNSFQEAESFIKENGPIDVVLLDLVMPDMKGMDSIASIIKLNEPGAVVLFS GTANPHDLNAALELGCMGLIPKSLPLKSLESAIRLVSTGEVFVRASQNEPSAKGSTES FTERDLLVLSKIAEGKTNKEIAWMIQVSEVSVKSYVRKICMILGATNRASAAVRAKQL GII" gene 453614..453790 /locus_tag="RTM1035_02155" CDS 453614..453790 /locus_tag="RTM1035_02155" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02155" /translation="MMHRCGKRRVSMVMPRAFAPMVPNCTSFDPKVIYLKAAPCVIIR VGVTHSVLEDDCDE" gene complement(453894..453959) /locus_tag="RTM1035_02160" CDS complement(453894..453959) /locus_tag="RTM1035_02160" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02160" /translation="MLCVTFAKLAFMKEPLLKFLI" gene 453987..454403 /locus_tag="RTM1035_02165" CDS 453987..454403 /locus_tag="RTM1035_02165" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02165" /translation="MAPEGAFVTRQVLFFAQPCFNTQNVERWLEGMFDLRVMVPRNTT FYHEWLFRYATEAGLIIIDKDSFGGEQSSFQRFAKIAREMCEEVPMIVLSRDFRVNDF DLSWSDNWDVSLQSPVSQHTLGLAIEVASDIAINGR" gene 454880..455095 /locus_tag="RTM1035_02170" CDS 454880..455095 /locus_tag="RTM1035_02170" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02170" /translation="MSDHVKLSYDEYQKFSLGLENLLKTIIKIDEIVLPRSIDETALN EMDGLVIHLREEAKTLLQDFNAKRHVR" gene 455884..456525 /locus_tag="RTM1035_02175" CDS 455884..456525 /locus_tag="RTM1035_02175" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02175" /translation="MIKLELLRTGALAGLAACAPILALANGYLENRPWQFQTTTDRAN KAVVLDLIERKKGGFYDGFTTNIHNETNIGSQINCNNNANATGNIADNGQAGPNTESN GTPSISAEGIGNTDSGTAADDPSSSGSTTQTSDQTNSGEVVATIGNSSIENSFGDVAN GVTDQALNNTQDNSGSQTAGVDGSTACNMEGSSVTGTVNRLLKKSALDAVMRT" gene 456563..457741 /locus_tag="RTM1035_02180" CDS 456563..457741 /locus_tag="RTM1035_02180" /note="COG3666 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="transposase, IS4" /protein_id="jcventer:1101493006646_RTM1035_02180" /db_xref="CDD:33464" /translation="MRGTDEASGSLFSYVDLEQRVPDRHPLRLIRRVVNDALASLDAE FAALYTDFGRPSIAPERLIRASLLQLLFSIRSERQLMEQMNYNLLFRWFVGLGIDDPV WVPTVFTKNRDRLLTTDMSRKLMAAILAHPEVRPLLSDEHFSVDGTLVKAWASMKSFQ PRNSAPPPHDDDPGGPPPPADATFANTEPQPQQTETQPMPDTPRHIRNAAVNFRGQKR SNATHISVTDPDARLYKKAPGAAATLCFMGHTLMENRNGLIVQADLTHADGYGERKAA LEMINRHSPGSTRRLTLGADKGYDSANFVAALRRMVVTPHVAQKARSSAIDGRTTQHP GYALSQRRRKKIEEPFGWAKTVGGMAQTVHRGLDRVRAQFTMTMAACNLARLPKLLAP " gene complement(457750..458208) /locus_tag="RTM1035_02185" CDS complement(457750..458208) /locus_tag="RTM1035_02185" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02185" /translation="MPKNKNQTPNHSRESSNAILGWFHVAPSPLAAIFTVIVIGVMCA LGAFIIFEYRSLQVQSHGRVGSAYIDNLLAPLALSHFESLGNSGRGSDQAFSYVAEKN PNLVMRVWALDGALLYSTLNRLLKKSALKDVILPPRFEGGSLRLRTPGRV" gene 458633..467770 /locus_tag="RTM1035_02190" CDS 458633..467770 /locus_tag="RTM1035_02190" /note="COG2931 RTX toxins and related Ca2+-binding proteins" /codon_start=1 /transl_table=11 /product="Animal haem peroxidase" /protein_id="jcventer:1101493006646_RTM1035_02190" /db_xref="CDD:43031" /translation="MAVKLNIADLEFFLRQVKISEAHASGTPLTEIYVDADGNVVPEG TPGAVLAIPEALVPNGLRTVDGRYNNLIEGRETWGAADTPMPRLLSQTFLNDQDGDEM PLGAPGGPLVTNTDYGVIGTPSGTNGGHTGNVADADPRIISNLVVDQSTANPAVVEAW FANDAALAAFHERYGEDAIPIRPGEGPEALELLNTSFEDQPLLDGAPGVTSNPLGNFT TTAPSDWTITGGSGGLFAPVDSVSSTAGHPGPNVAWLTGGATLSQDSGTLTEGASYQL SLSVGDRTDQVWSGGTARLVAVGAGGVTTVISSVTLPEPADGQWADLTLNSGPISAGL AGQTLRVEIQQTGGSQVLVDNVALSTSNGNEIEIDNIDLATIPNIAPDDGISAPFNAW MTFFGQFFDHGLDLITKGDNGTVFIPLQADDPLVLGADGIAGTADDLPNHLRFMALTR STPVDGPGADGVLGTADDTQHEGQNTTTPFVDQNQTYTSHASHQVFLREYAFDTNGNP VSTGKLLDGANGGIPTWAEVKAQARDLLGIELTDGDVLNIPLLRTDDYGEFIRGPNGL PQIVVGIGADGIPNTADDDVVEGNLAAPVNTFTAGAIRIGHAFLDDIAHAANPFDSQS GMLKTADDDTAVGLSDSVSTAGTYDNELLDRHFVTGDGRGNENIGLTAVHHVFHSEHN RQVVAQKKTILESGDIDFINEWLLVDLAAGDPIPTDPTALTWDGERLFQAGRFATEMQ YQHLVFEEFGRKIHPNIDPFVFNAVTDINPSIFAEFANVVYRFGHSMLTENMPRVLVN ELTGEVTTDNMGLIAAFLNPVAYDNDGAMSADAAAAAVILGMTTEQGSQIDEFIVPAL RSNLLGLPLDLAAINIARGRDTGIPSFNDARAELFQQTNSVWLKPYENWVELAANLKT PMTIVNLLAAYGTHSTILAANTLEEKRDAAFDLVFGGGGVSDADRFDFLLGRNGWTSD TNGLNTIDLWVGGLAERIMPFGGMLGSTFTAIFEAQMEALQDGDRFYYLTRTQGQNFL NELEENSFSKMLLANTSLADPGADGIRGTEDDVVRHHIGVDSFARYDFVLEVNQANQL IDDPVGNDPVLEGLGMGKVVRDDPTTSEVETNYIRVTGGEHLAVGGTNGNDTIITSDG DDGIWGDDGDDFIESGFGVDLVNGGGGNDIILDSGDEGDFLKGEGGDDVMASANGLDV LMGGTGKDVIFLGVDSSEVFGGSGDDFIMGGAGADFLLGNEGDDWMEADGGFDTTAGD NSELFFNSKIIGHDVMFAGSDEHDFDAESGDDIMVQGESVMRNEGMFGFDWVSYKGVA IDAYADMRIKIFTTDEEDILRNRFDKVEGLSGWQMNDTLIGDDRVAPGTGEGAEAELF NDGLDQAGIDRIDGLSDLVTLLNGEEFWENGNIIMGGGGSDLITGNGGDDIIDGDRWL NVRIRITGDPTDENTAANEIATVDTLRHIFTEEDGVDPAWVGQSLFELLVSRTIVPAQ MNIVREILDGGQEDDIDIAVFSDNRDQYTITNLGNDVFQVEHTGFGTNPAILIDDGID TLHNIELLRFADGDFALPRPATGMPVINDPTPTNGQVSPVEGQLLTVDTSGIADVNGL GAFSFQWQFLDGAVWTDIPGATDATFTPNDPNFIQQLLGDISEIGRQLRVEVSFTDGV GTLETVYSEPTLAVAENTGVTLNGTTFSNNSLNGSAGNDLLTGVSPFFGVGGNDTLNG NGGDDILNGQAGNDVLNGGAGFDQLDGGGGADVLNGGADDDIIIAGGGTDTIIQASTD GRDVVDGGTGNDTFRVQGNAEAETFTVYAMSGGQNAGLAASLGTSFLASTEIVITRTV GTTTTVVAELDNIEEIAVDTLAVSANDGNGVPNGGVVGGDTVAIVGNFVPTSLNFSTI TVNGTAADDTIDISALTSAHRIVFRGEGGNDTIIGTLRPQDVIELPGIGDPVVTVNED GMVTVSRGGSSVTFDGSSGLPGIGGGTTSDDDVADGSFSLSARDLEGLKNLVNGELAF DGDDDTEEATGVRTLSGEGNNEANPAYGAAGEPFIRLTEARYGDPDENGNRQINPIFD GLDPRAISNILGPHDDTTAPNAMNASALFMAFGQYFDHGLDFIAKNPAFGTIEIGGPG AERSPTSDNPADLTRAEVAGYDEDGVPQHTNMTSPFVDQNQAYGSHELVGQFLRESDG AHGFGMRLLGGEADPSDPAFTLLPTLRDLILHHWEAETYFEDPGLPGGAARLQDVFPD LVDEITGEIDPDMVQALASDFLGSGQPLLLDANPFIDLLDHRMAGDGRANENFALTSV HTVWARNHNFHVENMLAQGFEGSDEEIFQAAKMLNESDYQRVVFQEFADKLLGGLRNA DGDREDHGWDGYNPDVDARISHEFAAAAYRFGHSLVGENLQVQGPNGELIQVPLYDAF LNPSNDPSVFNGPLPQGYVPAPGYAQYGVAAIIGGTAVQAAEEVDLKIVEAIRSDLVR INADLFSFNVARGWDVGLGTMNQVRTQLAASTDPYVSQAVDMAGDLSPYSSWADFQAR NDVSDEDMARLMEAYPDLVLETPAQIAAFVAVNPDVVLEDGANGAKIVKGIDRVDLWT GGLAEKHVNGGMVGQTFWVVLHEQLDRLQEGDRFYYIDRFDNFDFYQEFGEDTTFASI VARNTSLTDIDNNLFDANGIDDDDDNATEDDNATEDDNATEDDDDTAGGDDDNATDGD DDTAGGDEDNATDGDDDTADGDEDTASDDQDDTAGDNDTEGDEDDDEPEDNDSNVTPP LAASGNVIGTAAADALFGGAEGDNILALAGRDMIFAGDGDDNVLAGSGRDMIFGDGGN DRLFGEGGDDFIEGGAGNDFVVGGAGADLFVATMNDGDDVYYGDDVTGGSGSDTLDMS QITADTSVDLGSASGGRGYASSAQSGNDVLWSIESFIGGAGNDTITAGSAQNEMDGGV GNDVYRFLSASDADGDTISSFEPGDKIDLSQIDANGSGPGKGTFTLVSEAFSGGGQIL VTHETGANGDVTVIQGNIEGDNGPDFSISIRGRHDLTQDDFQL" gene 467860..469656 /locus_tag="RTM1035_02195" CDS 467860..469656 /locus_tag="RTM1035_02195" /note="COG4618 ABC-type protease/lipase transport system, ATPase and permease components" /codon_start=1 /transl_table=11 /product="Type I secretion system ATPase, PrtD" /protein_id="jcventer:1101493006646_RTM1035_02195" /db_xref="CDD:34241" /translation="MANQKNTSGNAAAKALGSIKGLIVFLLLLSGVINILALTGAFYM LQIYDRALVSGSIPTLVAISFLAIGLYLFQGVFDVIRTQILIRVGARLDRRLAPVAHQ LVVDMPRLGYSTSEALERGRDVDTLRGFFGSQGPIALFDLPWMPIFLAFVYFLHPMLG ALTIGGAFTLATLAIAAELRTRSWSSSTVSATIERNAIADSNARNAEVLKAMGFASRA VARFSAANDRHLELQTRTSDISGTYSAISRVLRMLLQSSILGLAAYLTIRGELSAGAI IAATIASARAMAPIDLAIGNAKNMESARTSWRRLRNTVEVLENQPKPMWLPGPKYNLK VEGMTVAAPATGRVLLSDITFEAAAGQAVGFIGPSGGGKTTLARALTGIWPPLRGSVR LDSAELTQWSDDDRGAHIGYMPQDVALLDATVEENIARLAETPDPEAIVAAARAANVH EMLVRLPDGYRTYLGPMGTSISGGQRQRLGLARALYKSPFLVVLDEPNAHLDPEGEAA LTAAIEGVKKRGGIVVLIAHRPSALQACDLIGVIQAGKLTAFGPREQILNPKPVSVAS ATKPSVASERHSTETPVECHMLDEGRKAKKGG" gene 469659..473642 /locus_tag="RTM1035_02200" CDS 469659..473642 /locus_tag="RTM1035_02200" /note="COG2931 RTX toxins and related Ca2+-binding proteins" /codon_start=1 /transl_table=11 /product="RTX toxins and related Ca2+-binding proteins-like" /protein_id="jcventer:1101493006646_RTM1035_02200" /db_xref="CDD:32755" /translation="MIDVKSFRSATTAQSDPADPLGLEHPERSQTKLLSGWFAGLLGL GLYLRSFLWSDQHVAAVAEDEPPEEDSKDITESRNTSGLALHENAPDDSVGGPGDSWV EEGPTIVSFRYPVVLGRFESMFIEPLPDLVFGTEITRVTANTILPPFNLFPGINKFPQ DNGVEPGSPPFIPDPSNETEPDDPPTVAEEENPDQNETDPEQDRNRGPRNSSAVYLGD LGSGAVLAISLAHLLSETKDHDGDLLGVSINGSTVGHMDPKGDGWLYFADTDALGEVQ IKYSITDGALSIDQTAILNVIENVFTGTDGEDLIVGTRGRDAIFGLNDDDNLAGFGGR DRIYGGAGDDNISGGDGDDSLFGNDGDDLIAGGDGDDWISGGAGDDRLFGEGGNDVIY GDAGHDEIYGGDGEDKIFGGTGDDTVKAGDGDDEVRGGADDDILHGDAGNDHLDGGRG KDQILGGTGDDTVMAGAGDDEAWGEDGDDLIHGDAGDDALDGGLGDDQIFGGTGDDTV VAGADDDAAWGEDGDDLIHGNAGDDVLDGGLGDDQILGGTGDDTVVAGAGDDEAWGED GDDLIHGDAGDDVLEGGVGDDQIFGGTGDDTVVAGAGDDEAWGEDGDDLIHGDAGDDV LDGGAGDDEILGGIGDDTVVAGAGDDEAWGEDGDDLIHGDAGDDVLDAGLGDDEILGG IGDDTVVAGAGDDEAWGEDGDDLIHGDAGDDALDGGAGDDQILGGTGDDTVVAGAGDD DVQGEDGDDLIHGDAGDDVLDGGAGDDQIFGGTGDDTVVAGAGDDEAWGEDGDDLIHG NAGDDALDGGAGDDQILGGTGDDTVVAGAGEDEAWGEDGDDLIHGNAGDDALDGGLGD DQIFGGTGDDTVVAGAGDDQAWGEDGDDLIHGDAGDDALDGGLGDDQIFGGTGDDTVV AGAGDDQAWGEDGDDLIHGDAGDDALDGGLGDDQIFGGTGDDTVVAGAGDDEAWGEDG DDLIHGNAGDDVLDGGAGDDQILGGTGDDTVVAGAGDDDVQGEDGDDLIHGNAGDDVL DGGVGDDEILGGTGDDALSGGTGDDQLAGDSGDDVIFSDEGDDISHGGAGNDVLFGGD GDDLLDGGDDDDIVSGDAGQDSLYGGDGNDILSGGADEDTVLGGAGDDIVVADDDSAS DTYSGDAGHDQLNYSGATDGVELDLITGMASGESIGDDSFSGFEDYVGSTGDDHFRAG SGQASLTGNGGSDLYNFVQGDTVDIIRSVYQINDFNSDDRIWIGSGSSHREIRKAQKS LEERIEDDLDDYADALDVDEPRLTYYHDWTDDYRRTVVEVDFNRDRIIDLELRIEGDH ILLIEHA" gene 473668..474993 /locus_tag="RTM1035_02205" CDS 473668..474993 /locus_tag="RTM1035_02205" /note="COG0845 Membrane-fusion protein" /codon_start=1 /transl_table=11 /product="Type I secretion membrane fusion protein, HlyD" /protein_id="jcventer:1101493006646_RTM1035_02205" /db_xref="CDD:40616" /translation="MTKSGSVKNAPQSPAAFDRLRGRIILGVLMMFGLLGGVGAWAFN ANLTGAVIALGTVKVDQNLKQVQHRDGGIVEKISVREGDEVEAGQVMFRLDDAQSRAE LSILSAQLDEAEVRRARLVADREGAAEVRFPKRLSMSDPQQSELMSGELRLHAGNIVN RDNQREQLELGIAQVNDEIVALVSQRSALTDELALVEESHSRVVNLFEKGLIQMPRVD EAKRELVQMRGKLGELDANIARSRSRISEIEMRILSVDEVARNEAQRELTVVEARIQE LSDRLTAVQDKLSRTEIRAPISGRINELSVFTEGGVITPAEILATIVPASAELRIEVQ LPTTAIDQVYLDQTARVRFSSFNHRTTPEILGTISHISPATTISASTGEPFYIGYVDI SPEEFARLNGLALMPGMPTEVYLSTQEQTAAAYFARPLMDQFEKAFREE" gene complement(475977..476522) /locus_tag="RTM1035_02210" CDS complement(475977..476522) /locus_tag="RTM1035_02210" /note="COG4681 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02210" /db_xref="CDD:47036" /translation="MAQNATIYKIELSVSDMDRHYYETHKLTVAKHPSETDERLMVRI VAFALNAHEHLEMTKGLSTDDEPDIWQKSLSGEINLCVALGLPSEKVMRQSCNKAAKV IVYPYGGRIAEMWWDKVKNGTTRFDNLRVVNFSEADTATLAKLANRAMKLQVNIQDGD VMVSVDESVVYVTPDTWKDVT" gene complement(476984..478132) /locus_tag="RTM1035_02215" CDS complement(476984..478132) /locus_tag="RTM1035_02215" /note="COG0477 Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="probable MFS transporter" /protein_id="jcventer:1101493006646_RTM1035_02215" /translation="MELTAQDRRLSLGAVMLHMLGIGLTLGLTFPLTSLTLEAWGSAA WVVGLAGAMAPLAILLFMPVLPSVAQKLGAVRAMILGCGIGIAGLVVMYLVQTAPVWV AMRFVIGAGLALPWLAGDIWVNSVAQEESRGRVIAAYVACLFIGFSAGPLLLDYTGIT GIAPFAMGCGALALAVLPLIAVGRLAPTIVAEQGSGVLSAARAVPVMAVGAFVAGFTE ALIFSLLTLWGLETGLDETGALRLLTTCIIGGVVLQFAVGIMADRIGRQRLLGLIGLA LIAIGALLQLSTGGLVFVAAFITGGLILALYGLSLILLGERFSPAQLAAASAAFLILY QLGSVTGPLVAGAAMDLGGAAGFVFSLSGAGLAIALVAFTTRTRTKEI" gene complement(478123..478806) /locus_tag="RTM1035_02220" CDS complement(478123..478806) /locus_tag="RTM1035_02220" /note="COG1182 Acyl carrier protein phosphodiesterase" /codon_start=1 /transl_table=11 /product="(Acyl-carrier protein) phosphodiesterase" /protein_id="jcventer:1101493006646_RTM1035_02220" /db_xref="CDD:31375" /translation="MKGAIGEGDQETKEKSMKILHIDASARTEGSYSRRLSSHFIDCL HENGLAITVDRLDLAVHALRHFGALETAAITLPEAEHSAEMRQAIAPSDALVARVLAA DGIVIGTPIYNFGMPSTLKAFFDHVSRNGKTFLADGTGMRGLLGDTRVAVLSATGGTY GPGDVFDGLDCLTPHIRAILGFLGVTDLSFVAAQSMMFAGPDAAAMSLDAAKTEAASL AKTWSTAWN" gene 478837..479181 /locus_tag="RTM1035_02225" CDS 478837..479181 /locus_tag="RTM1035_02225" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02225" /translation="MTADRLQTHQENPMSNAIIESVTFKLNEGVSHDAFLAAAKGMNA WVVACPGFVHRRLSCTEDGTWIEHIQWQDMPSAKAAAAEIGKVPGNADFLSAIDGKTV QLMHSELAVAIN" gene 479186..479890 /locus_tag="RTM1035_02230" CDS 479186..479890 /locus_tag="RTM1035_02230" /note="COG2378 Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="Helix-turn-helix, type 11" /protein_id="jcventer:1101493006646_RTM1035_02230" /db_xref="CDD:32525" /translation="MLERGRRLADIVEIVRDGRLHLARDIADALEVSVRTVYRDIGTL VAAGVPLDGERGVGYILREPVFLPPMSLSLVELEALSLGMAIVQEAADAELQVAAAGV MAKIGEHASNRRQAPKSWGFGVYAFEKAREGFRHMPLIRRAIREGLKLRIDYRSLDDQ MTSRVIRPLQTEYWGRVWTCSAWCELRDGFRAFRIDRMQVCEVTGRGFKPEVGKTIED YLTHVANQMDRDRDRS" gene 479850..480356 /locus_tag="RTM1035_02235" CDS 479850..480356 /locus_tag="RTM1035_02235" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02235" /translation="MSQTKWIEIETVHSFITNELDGVVPKDAWGETSYFYNPGHVFQR GTYFATIKQKDGANDRASQLDRSGVWRLNLGVSKEVFFELFGPPPPRPGKGGVIDGGW DFAASDQLMPHPIYGWMSWISVLNPSRLTWGKCLPLVSDAHLRAKGTFEQRRAKQNGL ARRIAAKS" gene complement(481537..482562) /locus_tag="RTM1035_02240" CDS complement(481537..482562) /locus_tag="RTM1035_02240" /note="COG0270 Site-specific DNA methylase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02240" /db_xref="CDD:30619" /translation="MEVYGRSLPVRKKIADSLATIVDYSVNQMGDTAAFDYPPEIIQH DLATEVGKTDLLIAGPPCQGHSNLNNHTRRNDPRNDLFVATAAIAVALEAKAVVIENV PGVVRSHSDVVELARRLLASEGYAVADRVLRMDDLGGWQTRARYFMIAVKDAEQEILQ ETLSQLATEDSGACFGKRDPRDVLWAIADLGDSGGNSVFDTSPVQGPENIRRIDFLFD EGIYDLPNSERPDCHKDGTTYTSVYGRMHPDRPAPTITTGIGTPGQGRFIHPTRRRLV TPHEAARIQSFPDGYGFMGGDGEPPRKALAKWIGDAVPPYLGMSAVCAALSVLTGAAP KVPWEVR" gene 482590..482724 /locus_tag="RTM1035_02245" CDS 482590..482724 /locus_tag="RTM1035_02245" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02245" /translation="MENRTAIEATGCKGCSQSEATGTAEQIDNRQWLLGGIIPKMISP " gene complement(482827..483630) /locus_tag="RTM1035_02250" CDS complement(482827..483630) /locus_tag="RTM1035_02250" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02250" /translation="MPYPIVSEESAKDWFKKWQDACEEASARVSPIEAPKVEKQPIGD EFDWEMEIQAIVDSLAALLEKEGEKAFESKGAVMLHKALPDHEALRDPEFWYWFATVP GRTLVENRYPFKENAQVDLELEDNERKAPNYLPGRNNFVGQHAKEVLFFRLWIRAEMG RLVDGADDTSKVYEYARGGSVEFWRSHLLRVLYAQHRPFLQAFVDFQFPGPDRDKPRL TIPEIRQLAKDLAKACANVSVELLDINQSKALIERVWTRTSSVRAWVKD" gene complement(483630..484544) /locus_tag="RTM1035_02255" CDS complement(483630..484544) /locus_tag="RTM1035_02255" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02255" /translation="MNAWVRSQPKTLRPYFGAQAAEGLLDEMELFLKFGDAPVQGNRL IVDDSQMADMAPRLYPKLSEERINAVFGERRAAFDLIVTLRTPQMLRRELIDRFSLGD EAPECIEVPKHMLKDAKLTGLFELGISICLAEEIDLGAGWPSHLGSWVTKEVYTIGLD RRQSTFRILPLTEELAKSLHLPKGTFVYVDDIEDLNTVYDEGTSCATAYVSEKVLLSS ASGKSAAAVAALIWSEIASAILLADGNGVSEAEEVTGGSPLEAILENLRADQSLSLSE LKNLIKDPVRLRAAVHDSRGLVKDLEKV" gene complement(484541..486328) /locus_tag="RTM1035_02260" CDS complement(484541..486328) /locus_tag="RTM1035_02260" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02260" /db_xref="CDD:31258" /translation="MVERNWFYKRVDPDGGAGGEVFKSIFNGSGLDAAERLAREALQN SVDAAREGETPQVSLQMNAYSDADLDRFWHGAGLDAFAARVGVLGLHSENAFETKPET LRVLHVVDSGTTGLAGDPTSPSSKMRKLLMEIGGSQKVVEDKNSGGSYGFGKAVYSAS SRVAVIFAYSRTHDASGQPLSVLMGCAYHREHEFDGQTTSGRAFFGKRIEEHGIPIRH DPFVGDEADELAAELNMSREEGDIGTTIAIVDCPLKMEDIKRGVERSWWPKIRRENFR VNITDEDGQRLHLRPLQDPELRPFIDALDVALGRSPEQRGKSRRKADFNKLDGKKIGQ LGLFAWADEQEVDEMSDQIDRRDTIALVRSPGMVVQYYRRGFPSHPPVVGVFLADDDI DDILRRSEPPEHDQWDANADRLDPSSKESEIVQSVHSRIWRELRTFQKFARPPEKSDG NRFLQLERELAKLFGPTGKREPIGGGKVETPVSLRPDVLIEQAADGLKVKGRVTIQLK EDHEGDLPVVVTMQLSSIDEGHRHLDPIALTASFNGADVEKVDEAEWHLTLSPGEKVE VELESAVYEPDWTVDFVPRVKPLVTEVKQ" gene complement(486377..486601) /locus_tag="RTM1035_02265" CDS complement(486377..486601) /locus_tag="RTM1035_02265" /note="COG0457 FOG: TPR repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02265" /translation="MDTAKHEKFRQLAESRTNKAIEAISRIGNLSNRSLYEWEEAELR KVIKALRDSVSEVEQRFATPKSRTGGSFKL" gene 486866..487213 /locus_tag="RTM1035_02270" CDS 486866..487213 /locus_tag="RTM1035_02270" /note="COG3727 DNA G:T-mismatch repair endonuclease" /codon_start=1 /transl_table=11 /product="very short patch repair protein (DNA mismatch endonuclease)" /protein_id="jcventer:1101493006646_RTM1035_02270" /db_xref="CDD:29956" /translation="MTDTVTSEVRSKIMARVRSKDSKAEVTLRKALHARGFRCLVNRR GLPGTPDLVFPRRRAVLFVHVCFWYRHDECRKATTPATNEAFWTEKFKRNIERDARKI AELEALGWRVEVV" gene complement(487430..487501) /locus_tag="RTM1035_02275" CDS complement(487430..487501) /locus_tag="RTM1035_02275" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02275" /translation="MVDNIEINFESEIVLVLQSVTCV" gene 487582..487860 /locus_tag="RTM1035_02280" CDS 487582..487860 /locus_tag="RTM1035_02280" /note="COG2801 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="Transposase and inactivated derivative" /protein_id="jcventer:1101493006646_RTM1035_02280" /db_xref="CDD:41572" /translation="MAGKREKPEEIVSKLRQVEVLQGQGATIAEAVRQIGVTQQTFYR WRKLYGGMGRSQLARLKELEKENQRLRRAVSDLTLDKLILTEAAKGNF" gene 487968..488708 /locus_tag="RTM1035_02285" CDS 487968..488708 /locus_tag="RTM1035_02285" /note="COG2801 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="Integrase, catalytic region" /protein_id="jcventer:1101493006646_RTM1035_02285" /db_xref="CDD:40748" /translation="MPQGRADEQRLTDDIIELADQYGRYGYRMVTGLLNNAGWCVNHK RVERIWRREGLKVPQKQKRKGRLWLNDGSCVRLRPERPNHVWSYDFVQDRTADGRVYR TLNIIDEYTREALMIRVDRKLNSTDVLDALTDLFILRGPPEYIRSDNGPEFIAQKVRD WIAAVGAKTAYIEPGSPWENGYCESFNARFRDELLNGEIFYSLKEAQILIEQWRVHYN TVRPHSALGYRPPAPESIVPLDQRPTMH" gene 488994..490076 /locus_tag="RTM1035_02290" CDS 488994..490076 /locus_tag="RTM1035_02290" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02290" /translation="MLLPDLETVPKWVGHRSLGALLIDKELHDREAHATEHKILNDLQ SGKRVSIQRVETLFSAIIGKWCQNDDLHRSRLHKTHRRLQKGEKHYVQVDFNREGAQL LWSYLAKYLPKTHAKTRKLLDELILISTELHRDYRGNGSQTVAPTLSRFGESPLAGVA QSQFLAEMTMLMKEGNEEVARVELSAFGALLLSAEYFHDSETSVEAFCDSLTKLFVAH QGRVNPLRSFSNWLERLEARTGYAKDQLLLDGFVHPVCKTETLLERDPRNLIRNARRY RNGDLVPTFHKTQECLRSLRPELEEGQLDKWKAELDSREFGLMFVLLVANSARSIKKF GGVPERPCQAVYDLFAKGGGTCHPHG" gene complement(490096..490254) /locus_tag="RTM1035_02295" CDS complement(490096..490254) /locus_tag="RTM1035_02295" /codon_start=1 /transl_table=11 /product="putative orphan protein" /protein_id="jcventer:1101493006646_RTM1035_02295" /translation="MAKHDDDNRANQMNPNNDAYWDSREYDGRPDDWEDRLEDGDSHD YTPLTSTH" gene 490607..491050 /locus_tag="RTM1035_02300" CDS 490607..491050 /locus_tag="RTM1035_02300" /note="COG3666 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="Transposase and inactivated derivative" /protein_id="jcventer:1101493006646_RTM1035_02300" /db_xref="CDD:33464" /translation="MLGTQKVHARLFYEFNLETHIPADHLLRGINRFLDLDGLHEEMR SFYSHTGRPSIDPKLMIRMLVVGYVMGLRSERRLCQEVHLNLAYRWFCRLGLEDKVPD HRAFRSPGTASFATAMSFASSSSAWWPSASPVVWSAARALRSMRA" gene 490987..491466 /locus_tag="RTM1035_02305" CDS 490987..491466 /locus_tag="RTM1035_02305" /codon_start=1 /transl_table=11 /product="Transposase and inactivated derivative" /protein_id="jcventer:1101493006646_RTM1035_02305" /translation="MAQCIARGLVGGKGFAVDARLISADVQKKSSSRQDKWDATTIDP NDAPRAVREYLDTLDEEAYSAATPVKPKFTAHADPASQWTAARKGPAFFAYSDNYLID TDHGIIMDVEATRSVRQAEVGANLTMLDRTANTSTCVPTGWLPTQLMGPRRAWSSSS" gene 491448..491993 /locus_tag="RTM1035_02310" CDS 491448..491993 /locus_tag="RTM1035_02310" /note="COG3666 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="transposase, truncated" /protein_id="jcventer:1101493006646_RTM1035_02310" /translation="MVELVLKRQILPFIPVIDKGERTDGTLSRSDFSWDDENDRYICP EGKDLRHARRNYSDPDRISTEMKPRRYRATKADCQACTLKAQCCPNSDTRSLQRGKYE VVRDFARSCMASAFNETAQKRRKEVEMLFAHLKRILGLTRLRLRGTSGVKDEFTLAAT AQNLRKLAKLCPTTAPSAPIG" gene complement(492497..492682) /locus_tag="RTM1035_02315" CDS complement(492497..492682) /locus_tag="RTM1035_02315" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02315" /translation="MKNSYDLPCGVTQDHRETLKLGRNLGAESLAFPPGFLPAHSQNT AIAAYFAVQIMMIQQNL" gene 492733..494076 /locus_tag="RTM1035_02320" CDS 492733..494076 /locus_tag="RTM1035_02320" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02320" /translation="MNNVFELKTGQRRPASSYEAFAAKIKRAKALRASFDQRAVFSIE DQERVAANLHRILEHLNEDRGLPKRQIAQKSGLGGSGDVDSTKRLDPYTLPEGASESR VRRLAKKPGKYFEIAEAIARILEEPMEGYVCQIFEGCSFGTGREFEPDWEDEGWVRLA NLLRRMAAAVIRDEDMSRYWLDVVKLNGCYDIKTGHLHQSNTALDSVGCETGLAGWNS VPDELPPIPSVLIGQRLMMEPHEDILVLKGGRQIEAEFSLYLEARLALAPVNQDGLPG PMIEFRSRLDAFSETEGRIVFDNMHSDGSGGSDTIRSALINGVEVEIAEFPLLDVPEA EWREDSLEHVYFAWREVSSALLRSLFGEIERPFDITFREREVYVQEMPPSRFPHGSAG FYLNAYLLTGELEKDLAAACRDCADKVVLFRNSLGQRIDEVEAEAEMRWTRGPEA" gene 494024..495130 /locus_tag="RTM1035_02325" CDS 494024..495130 /locus_tag="RTM1035_02325" /note="COG0457 FOG: TPR repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02325" /translation="MKSRRKLKCAGRADRKREGKLMEQMLTLTHATERDIDLLLVEEF SASATFSSWFLEQLGLNVEGMGAVSVFHSTRRMHNRREIDISVDISTDAGRVLLLVEN KLDTNEQPDQAKSYRDEAELRTSEYHCVLTVLVCPEHYIASHHRFANAFDRVVTYESV CQHFRNRAQTAPGEIGARCLHRASLIEQAIGKSRRGYVQVVHPGKRAFSNHYVALLKE LGSTLIPGPSMKKDSGAESVTMIFAPKTLPKWPFLPQMRIVHQLREANANINFYTWGD HFPALAQAMAPALQGTDFRLVPTVNKRRGGRAGLMVVAETPKVYQFADFDQQREAIVQ GIKATEKLRDWLLEHRADVEVWSRTVAQMNNGHS" gene 495194..495412 /locus_tag="RTM1035_02330" CDS 495194..495412 /locus_tag="RTM1035_02330" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02330" /translation="MRLDHRVFTPKYIGLSMQLALAKARISVIDFEKRRRGPMQCVVE QHAITSFGGRVSYAYESKQLATKALSTS" gene complement(495496..497040) /locus_tag="RTM1035_02335" CDS complement(495496..497040) /locus_tag="RTM1035_02335" /note="COG1200 RecG-like helicase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02335" /translation="MGELESIKGLPGMIDAAADTLKKAWRAGIEPAARAPKHLRIDAI ASLEEAVLDELPPGMMRPADIVAAATDRIKHSPAVLGPIEIVGLTELSPCWRPLLGAL TAHVPVQWTAGPRSAPAWLEATGVNISRAPANVPGISAVSAATAYHEAVDAMRWVRSL LASGVLPSEIAIATASPTDYNDYFLALRADSNIDLHFVHGVRAITTRDGQAAAALADI VARGLSQSRLRRLATLCWDSGLLEALPKGWLSILPTDAPLSTPVAWDRLLKKLMQEQE SDGTDHAPELRVAVELLMKGSDAAEEIGEAFLKGRALTIWRKSLLAGSAATIDATIET LKQDDGLEACVSVAWMPASALAASPRRFVRLLGLNSSRWPRGIEEDRLIPEHIIPTDV LDPLPVNLADRRDFETILTTTDGEVCLSRARRDSDGRLLGRSPLLDGHGEEIYLRGNS VPEHSFSETDRLMARPQEFASDPQTVGARACWRDWQSPELTAHDGLIRADHPPHSGNP RPHSVG" gene complement(497244..497627) /locus_tag="RTM1035_02340" CDS complement(497244..497627) /locus_tag="RTM1035_02340" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit epsilon" /protein_id="jcventer:1101493006646_RTM1035_02340" /translation="MQFGWFFDGHRALADCEACLALMAQELPQSGQRVMSAVRDAALQ DEYLIRAVDAPYDERLKLKERGYRWRPAELPLGKVWWTITADPSAEIEWLRSEVYGRD ANVPEYKVTALNRFSERLWQEVTSK" gene complement(497661..498179) /locus_tag="RTM1035_02345" CDS complement(497661..498179) /locus_tag="RTM1035_02345" /note="COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit epsilon" /protein_id="jcventer:1101493006646_RTM1035_02345" /db_xref="CDD:31188" /translation="MNDYSLFAIDEKHVVQPAAHECEDDWRLLRRLALPRRLNNPHGG TVKHALVLDVETTGLSHEADEVIQLAMLPFTYELNTGRILEIDHDRGFEGLREPGVPI SEEANLVTGLTAETVAGQTINGAIVEALVADADLVIAHNSSFDRVMVEKLWPCFAEKP WGCTLTSIDWLR" gene complement(498270..498413) /locus_tag="RTM1035_02350" CDS complement(498270..498413) /locus_tag="RTM1035_02350" /note="COG2801 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="integrase, catalytic region" /protein_id="jcventer:1101493006646_RTM1035_02350" /translation="MQDLEMATLGWVDWFNNRRLLGPIGNIPPAEAEENFYAQRDVLD MVA" gene complement(498429..499175) /locus_tag="RTM1035_02355" CDS complement(498429..499175) /locus_tag="RTM1035_02355" /note="COG2801 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="integrase, catalytic region" /protein_id="jcventer:1101493006646_RTM1035_02355" /db_xref="CDD:40748" /translation="MIGFIEDQRVVYGVESICRVLPIAPSTDYHHLACQADPTKASTR HQRDMELRPEVKRIWDENYQVYGVRKAWHQLKREGFELARCTVERLMKQIGIRGAVRG KVVKTTVPDTSAPCPRDKVNRVFRAPAPNLLWISDFTYVSTWQGFVYVAFVIDTFADR IVGWRVSRSAKTDFVLNALEQALHDRRPVQKSGLVHHSDRGGQYLSIRYTERLAEAGI EPSVGSVGDSYDNALAETINGLYKTELVHR" gene complement(499172..499513) /locus_tag="RTM1035_02360" CDS complement(499172..499513) /locus_tag="RTM1035_02360" /note="COG2963 Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="ISPsy21, transposase orfA" /protein_id="jcventer:1101493006646_RTM1035_02360" /translation="MMVMTKSKMANRYSPEVRARAVRMVFEHQGSYETQAGAIAAIAP KIGCIPQTLREWVKQAEKDNGMRDGVTIEERDRIKALEREVRELRQANEILRKASAYF AQAELDRPLKR" gene complement(499628..501241) /locus_tag="RTM1035_02365" CDS complement(499628..501241) /locus_tag="RTM1035_02365" /note="COG1061 DNA or RNA helicases of superfamily II" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02365" /db_xref="CDD:31261" /translation="MDWLQAGEDRHFLINAAPGAGKTICASVIAQRLLEADMIDRVIV IAPRKTVVNQWGDEFNFVTGRSMLKITGADEEPEEYGADLCATWSAVQGSLDGLQAVC RKDRTLVICDEHHHAAVEAAWGDGANGAFADAKFALILTGTPIRSDGKESVWLAYDNQ GQIDHPEDGSYTLTYGEAVDLEYCRPITFHRHEGKFSVKLDDGENISVSGTEETQFSD GLKRIKGLQQALDYYKLACTPKYLPSGAADPVSYQASLLQWCIDKLNDLRLRMPEAGG LVIAPNIPVAEYMAELLELLDGEKPVVVHNRVANPDGKIAAFRNSKKRWLVSVAMVSE GVDIQRLRIMAYLPNAQTELSFRQAMGRVVRNFGPQDDSRAYVVMPTHRIFEEYARRV EAEMSPTKRRPSDTPDTKVCPDCGAECPKDAAACHVCDAEFPVRPPRMKTCDACGSLN PLSAKNCQSCGEGFGHDFEISLSDALRVGAIIRGMDLDEEEVQEGEAIRDVFRKGVLS SGDDQLIKILKLLPEESYGRLARMFEENK" gene complement(501279..501446) /locus_tag="RTM1035_02370" CDS complement(501279..501446) /locus_tag="RTM1035_02370" /note="COG1403 Restriction endonuclease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02370" /db_xref="CDD:31593" /translation="MLAGNLCQKCGEVLDASFHADHVHAHSRGGATVLKNGQALCATC NLKKGASNDDY" gene complement(501485..501751) /locus_tag="RTM1035_02375" CDS complement(501485..501751) /locus_tag="RTM1035_02375" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02375" /translation="MAEYKAASALREHMLEGNPVTLLEAILLFGVRNPNAEFTRIKKD RFLIESREVPMAKVIRRINEYAVCKVPEELPYKEIQLTEYWIKK" gene complement(501744..502100) /locus_tag="RTM1035_02380" CDS complement(501744..502100) /locus_tag="RTM1035_02380" /note="COG0081 Ribosomal protein L1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02380" /translation="MKTKQKLQGVSLLSAIFGELSQQLPEGVVSTEELLGAAQKLIEL SKREYVTDGHPDQRRHQGYYSYDLCTAFDKFQGRILETETGLMEDPLAGRGGRNGLKE LLLGSQEDMILEEVYG" gene complement(502139..502594) /locus_tag="RTM1035_02385" CDS complement(502139..502594) /locus_tag="RTM1035_02385" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02385" /translation="MMGIKIHKNNYLWPSPRGVLLECIKKFVANHKKYLVMMRKLSYL KVSSGDGRKLWGCQKMAQREKDELEGVTAKVSALTKALLDEGIGPSMIAFALTSVAAD MGLQASGDPMRVFPVLLGAISEQARLRFEGSAEEEGEGPACVPLGATVH" gene 502670..504154 /locus_tag="RTM1035_02390" CDS 502670..504154 /locus_tag="RTM1035_02390" /note="COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains" /codon_start=1 /transl_table=11 /product="sigma 54-dependent transcriptional activator" /protein_id="jcventer:1101493006646_RTM1035_02390" /db_xref="CDD:32386" /translation="MKILMAWIGTQDLDAPTHTERQTGPICSAVEARRFDRLVLIANQ DSAKVAAYTGWLRQRASAEIIVESVQLKDPTDIDAIHAIAVDVVEGCRRAAAPHIPEF TFHLSPGTWAMALVWAILGATRFPAELLQSSREGGVQTIEIPFDVSAELLPKIMESAD AKLTRLSGGLDVKTFGDLIFRSPAMERMASKATKAAMRNVPILIEGEAGTEKEVLARA IHGYGPRREQPFVSLNCGALKPEQIDAQIFGSGDPGSNGTGALAQAAGGTLYLDEVEL LPPQAQVRLQVLLDEMVGDDITTSNSGNADVRIIAATRKQLINAVTAGDFREELFFGL AVLVLKIPPLRERMGDLGPLIEMLLERINEQSVDEPGFVTKTLSPGAKNVLLQRPWPG NLRELENSLRRAAIWSEGSQITENDVWDAVFTAPRPAAPQDSILDKPIDEGVNLQEIL ADVARHYITRAIAQAEGNKTNAAKLIGLPSYQTLTNWMTKYGVS" gene 504233..507661 /locus_tag="RTM1035_02395" CDS 504233..507661 /locus_tag="RTM1035_02395" /note="COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases" /codon_start=1 /transl_table=11 /product="putative type I restriction enzyme R protein" /protein_id="jcventer:1101493006646_RTM1035_02395" /db_xref="CDD:33853" /translation="MKSRNFEFLRPEWQELAELGALAEAYAYADPASALVKLRLFAEN LTKDIYRDLRLPKPDQATFIDLLRNESFSAIVPKVVLDKLHALRIHGNKAAHGDPAST KNALWLIKEAFDLSRWIFVQARKGMSDELPKFSEILQSAGDDTKGKLKREKRELLEKL AGQEAQMEKLLQELEEARQTATAAEKEASEIAALASSAAETANLLKFDEATTRARIID SLIASAGWNVANGEVSTSEVGKEVQIPSQPTATGIGYADYVLWDDDGSPLAVVEAKKT SVDPETGRQQAKLYADGLEKVHGQRPVIFYTNGYDIWMWDDAGGYPPRKTYGYYSKDS LQYLVKFQRKSRKALNTIEPRSDIVNRLYQIEAIKRVSERFTGNHRKSLVVQATGTGK TRVAIALTELLIRAGWVKRVLFLCDRRELRKQAKNAFGDFLASEPIRVVSGRIDSTAK ERIFIGTYPAMKKVFQSFDVGYFDLIIADESHRSIYNVYGDIFTYFDSLQIGLTATPV DFVTRSTFDLFQCEGQLPTANYDLEEAVRDGFLTPFEVFEHTTQFMREGITLDTLTAE QIKELEDQGEDPSQYDFAAAQIDNVIYNKDTNRAILRNLMENGLRDATGQTPGKSIIF ARNHQHAVLLRQLFDEMYPQYGGRFCQVIDNYDPRAEQLIDDFKGNDDGKNDELTIAI SVDMLDTGIDIPEILNLVFAKPVKSPVKFWQMIGRGTRLCEDLFGPGEHKSVFRIFDH WGNFERFETGYRPAEPTQSKSLLQLVFEERINLAKLALQKSEIAAFEAIIELIGKDIN DLPEESVAVREKWREKRSLGAPETLKAFAPASVVALRQVIAPLMQWRNIRGHGDAYAL DLLIARIQIAVLRQSNTVGDLKIDMLERLGALQMHLNPVREKADVIKTVKSDAFWDDL TVEKLEEVRTPLREIMRYRERTTGPAVPPKIIDVTETKSEVQSARRKVSLDAVNMKAY RNVVEEELRKHFDENPTLQRISRGEPVAQADIEKLVSLILAQTPGVNREILEEFFSET AAPLDFVIRSIIGLDPETVEAKFADFARTHPSLKAKQTRFLGLLKNHIARYGSITRAK LYEDPFTVVDADGPDGVFANEKDVDELMEIVDQFAPPATASGDQQEASERTKDQ" gene 507658..509190 /locus_tag="RTM1035_02400" CDS 507658..509190 /locus_tag="RTM1035_02400" /note="COG0286 Type I restriction-modification system methyltransferase subunit" /codon_start=1 /transl_table=11 /product="putative type I restriction enzyme M protein" /protein_id="jcventer:1101493006646_RTM1035_02400" /db_xref="CDD:30634" /translation="MITGALKRDIDALWTEFWQGGITNPLTVIEQITFLMFARLLDIN ETRDENRLKRAGKRDNPPRFKEDEQHLRWSHFRHLGADEMLPLIRDEVFPHFRKSSTS GSAFAEFMKDAQLMIQKPSLLVKAVNMIDKLPLTEGDTKGDLYEYLLSKLTTAGINGQ FRTPRHIIKLMIELLAPQPNEIIGDPSAGTGGFLVETMQYLMKEHTSEEGIDEVTDPE TGKTEKIYTGDLLEDHREHIRSKMFHGFDFDATMLRIAAMNLMLHGVDDPDIHYQDTL STSFSDKYPQSASDGFDVILANPPFKGTLDFEDVHPGLLRKVKTKKTELLFLVLILRM LKDNSGRSATIVPDGVLFGSSTAHVALRRMLIDDNQLEAVISLPSGVFKPYAGVSTGI LVFRKGGRTDDVFFFEVEHDGFTLDDKRDPTPDKDDLPGCVEAWKNRDAQRLTDRTQK AFFVPAEEIRQSNYDLSLSKYKERLYKEEAYDPPAEILARMKSLNDDIARDLAELEGM LG" gene 509187..510371 /locus_tag="RTM1035_02405" CDS 509187..510371 /locus_tag="RTM1035_02405" /note="COG0732 Restriction endonuclease S subunits" /codon_start=1 /transl_table=11 /product="restriction modification system DNA specificity domain" /protein_id="jcventer:1101493006646_RTM1035_02405" /db_xref="CDD:31076" /translation="MTATIPLGELVSIRGGGTPSRGKKEFWGGPIPWATVKDFKTTSL DSTLESITEDGVRKSATNIVPAGSIVVPTRMAVGKAAINTIDVAINQDLKALLPKGEI DTRFLLHFLLSKSNFLESQAQGATVKGIKLDLLKSLPFPDLSLNEQRRIAAILDKADA IRRKREQALNLADEFLMSVFLEMFGDPIENPHNFPKEKVKLHLSKSRAGTQSGPFGAA LKKHEYVPEGIPVWGVENVQYNRFIDKPRLFITEDKFNDLLRYSVQHGDILISRAGTV GRMCIASTSEERSIISTNLIRVALDPASLTAEYFVSLFSYLPGRVGALKANNKDDAFT FLNPKTLKEIEIPIPDMTQQKRFVSILHRVQHSIRRQGDQLAGFSDLFSSLSQRAFRG EL" gene 510381..512267 /locus_tag="RTM1035_02410" CDS 510381..512267 /locus_tag="RTM1035_02410" /note="COG4938 Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02410" /db_xref="CDD:34546" /translation="MRLSHIEIENFKGIGTKQSIDLAPITLLFGPNSAGKSTILQALH YLREILERNNPDPDQTIAGGLTDLGGFATLVHNHDLSRPIRIKVRIDMTEDQGSERLP LNSGASLRDDRFNELGIRYLVGENTELRDYAVVQEVGIGIEVRWSDLINAPYVSCLDV EMDEEALCSVVSPAQVGRAMATDFNFEHSLLQPIRYPYDYPEEDETLGFLNVLSEDGE VHKERALSTDLLEAIWHNSREMSSVMEEMSEQELEDSADGSAWDTDVRVGIETELGAL PEIDKPLASDFVDPDRDLSMRALMAGESAADKIMDRTFGRSSRMTRDENDAYDNALKH YKQQLDTVAGLSAIMDELILGPVRIVRDYLASVTYIGPLREIPSRGYRPRLSPDESRW AQGLAAWDLLYTQPEEGLLDSVNEWMSSEERLRTGYVLVKSSYKQISTAEGLHQLFKR GINEDDLGDLQELYEAIPTKSEIGLMDVVRSIPVAPSDVGVGISQMVPVVVACLMEPD GLVAIEQPELHIHPAIQVGLGDLFISATSTYQPATGPERSLLVETHSEHIMLRLLRRI REQSENELPPGILGLTPNDLSVVYVEATEQGPVFKKLRVSEDGDFIDSWPKGFFEERA EELF" gene 512267..513193 /locus_tag="RTM1035_02415" CDS 512267..513193 /locus_tag="RTM1035_02415" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02415" /translation="MHYEYAVEPQAIGSSWENFRYLIEKFGFDKGRLISQFPKSWFRE VYEAADTLSPMQRKRVEEALNHAKKNKVVRSGRPYDPTIGSWLENALVEHKRQPFHAI IASEAPKGEASALSMDTLDESAPLMKVPHEEDIVRDIGSIATALRGLLHFGSRLVFVD AYFDPFNTRQKKLFRELFRTVAELNPRAICEIHYRNDTKKGLSNDILKREAAVLSKDI IPPGIRITFFCWCEKDAGEDFHARYLLTEKGGIRVDAGFEPIGSHETSDFSLMDYELV HRRLAAISRDSDVYKLVGPVICISSDGSVETL" gene complement(513566..514093) /locus_tag="RTM1035_02420" CDS complement(513566..514093) /locus_tag="RTM1035_02420" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02420" /translation="MKELGPDNAFWIDGEWLDWDSIIDPEEVRYSRLAELEREARLRL KYPNADLTLIPYFQDLLTLAESYFQETGQHLNVYGDIGELFGAIMYGIKLHRNYAQGS DGRLGNDFVEIKTISPLNSKEQINVRLDRHFNRLLIVKISADFEVAGRLVKRVNLPRR TGKNLRLAWTHMPEL" gene complement(514430..514501) /locus_tag="RTM1035_t02998" tRNA complement(514430..514501) /locus_tag="RTM1035_t02998" /product="tRNA-Phe" gene complement(514579..514761) /locus_tag="RTM1035_02425" CDS complement(514579..514761) /locus_tag="RTM1035_02425" /note="COG3024 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02425" /db_xref="CDD:43801" /translation="MSCPICQRKTDARYRPFCSRRCADVDLGKWFAGDYAVPSSDPAD IEEALDALEQEQQKPH" gene complement(514758..515783) /locus_tag="RTM1035_02430" CDS complement(514758..515783) /locus_tag="RTM1035_02430" /note="COG1530 Ribonucleases G and E" /codon_start=1 /transl_table=11 /product="ribonuclease, Rne/Rng family protein" /protein_id="jcventer:1101493006646_RTM1035_02430" /db_xref="CDD:31719" /translation="MTLRTIALDHINDAEAAALLVGGRLEDLLIDSDQPRPGTIYRAI ADRPVKGQGGMFLRTPDGSAFLRQIKGLTPGQPLLVQVTGHAEPGKALPVTTRLLFKS RYAIVTPDAPGLNVSRSIKDETLRDSLLEIAHAEMGDSPMGLILRSSCESAEAADIAE DVNAMRDLAEAVLADATGPEPETLTEGDGPHTLAWRDWVEPADVLTDPGSFAENGVLD QLDALREALVPLPGGASFYIEPTRALVAVDVNTGGDASLAAGLKANIAMARDLPRQLR LRGLGGQITLDLAPMPKKDRRTFEASLRAALRQDTTETTLAGWTPLGHFELQRKRDRQ PLTDLLK" gene complement(515780..516358) /locus_tag="RTM1035_02435" CDS complement(515780..516358) /locus_tag="RTM1035_02435" /note="COG0424 Nucleotide-binding protein implicated in inhibition of septum formation" /codon_start=1 /transl_table=11 /product="maf protein" /protein_id="jcventer:1101493006646_RTM1035_02435" /db_xref="CDD:30773" /translation="MRLILGSGSPRRRDLLAQIGVVADKILPPEIDETPAKAELPRPY CARMAREKAWTVVAEDDDIVLCADTTVALGRRILGKPQDVGEAAQFLLALSGRRHRVI TAVAVRRGSRIWERDVVTTVQMKRLSDEELNAYLATNDWQGKAGGYAIQGPAGALIPW IQGSFTAVVGLPLTETAGLLRAAGYPLWKDTQ" gene complement(516355..516546) /gene="infA" /locus_tag="RTM1035_02440" CDS complement(516355..516546) /gene="infA" /locus_tag="RTM1035_02440" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="jcventer:1101493006646_RTM1035_02440" /translation="MACSAEYGQAYRAASKEAVAYLHELTEEMNDPQAKAVLNTAAFS LGATLRAHATALQDKADLE" gene complement(516549..516767) /locus_tag="RTM1035_02445" CDS complement(516549..516767) /locus_tag="RTM1035_02445" /note="COG0361 Translation initiation factor 1 (IF-1)" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="jcventer:1101493006646_RTM1035_02445" /db_xref="CDD:30710" /translation="MAKEDTLEFPGVVKELLPNATFRVELENGHEIIAHTAGKMRKNR IRVLAGDKVQVEMTPYDLTKGRINYRFK" gene complement(516851..517735) /locus_tag="RTM1035_02450" CDS complement(516851..517735) /locus_tag="RTM1035_02450" /note="COG0388 Predicted amidohydrolase" /codon_start=1 /transl_table=11 /product="hydrolase, carbon-nitrogen family protein" /protein_id="jcventer:1101493006646_RTM1035_02450" /db_xref="CDD:30737" /translation="MKIATAAYPLDPLTSWADYHRKLTDWVAEAAAQGAELAVFPEYG AMELAMLAGTEAAGDLERSLHAVSGVMSEAYDLHAELATQYNLHILGASAPVFDPDLG PRPVNRAMLFTPTGARAAQDKQIMTRFEREEWHVAPGGPLRLFDTSLGKIGILICYDS EFPLLGKALADADLILVPSCTEALTGYSRVRIGAMARALEMQCVTVMASTVGTADWSP AVDTNCGMGGVFGPPDTGFPPTGVLAEGTLNRPGWTYAEVDLDRITHVRADGVVLNRR HWEDQLGRDVTVTSEPLR" gene 517896..518186 /locus_tag="RTM1035_02455" CDS 517896..518186 /locus_tag="RTM1035_02455" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02455" /translation="MYDEMPVHRVRTRLRRVVDHLAAGGQRVMVLRNGVAVAGLVSVS DLQALEQADQARMEHHAIRAQARLRDIGLLKAGLDSARLEARARYGPPDTKR" gene complement(518149..519384) /locus_tag="RTM1035_02460" CDS complement(518149..519384) /locus_tag="RTM1035_02460" /note="COG3748 Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02460" /db_xref="CDD:46072" /translation="MPEPAILLEWAGFAARWLHVITAMAWIGTSFYFIALDLGLRRAP DLPMGAQGEDWQVHGGGFYHIRKYLVAPPQMPDHLTWFKWESYATWLSGAALLMLVYW ASADLYLLSAESPLTQSQGIALSAGSLALGWLIYDRLCKSGLAAQPTRLMLVLFALLT AMGWAYTQVFTGRAMMLHLGAFTATIMTANVFLIIMPNQRIVVADLRAGRTPEARYGQ IAKLRSTHNNYLTLPVIFLMLSNHYPLAFATPYNWLIASLVFLMGVTIRHFFNSLHAG RGRPWWAWGVTALIFAAIVWLSALGGPNTADTTPKTTRLSPAQTRLSEAPGFDTVQEI VALRCAMCHATEPLWPGMIHAPKGVILETPADLARQARALYLQAGLSHAMPPANLTAM APSERATLIAWYRAGRTAP" gene 519533..520930 /locus_tag="RTM1035_02465" CDS 519533..520930 /locus_tag="RTM1035_02465" /note="COG1396 Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="DNA-binding protein, putative" /protein_id="jcventer:1101493006646_RTM1035_02465" /db_xref="CDD:33594" /translation="MAIQKLYAGAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNN RPVSTTVVLALAQEFGFDVTELSTGDAERMVSDMREALADPVFGDDPPPLADLRLTAS NAPALARAFLELHSAYRQTHERLASLDEALGREDARNQSSPWDEVRDFFHYCDNYIDA VDHAAERFAEAGGGPAISDLACARLAALGISVVEADTAQLRHYDRAAGVLTLSSRAAP ESRRFQLLLQLALVMQDQLLEATLDFARFQSDAARSIAKIGLANYFAGAAMMPYGRFL TAAQEVRHDLEVLAHRFGASIEQVCHRLSTLQRPGAKGIPFFFVRVDQAGTITKRHSA TRLQFARFGGACPLWNVHRAFETPGRFLRQLAETPDGVRYISLARDVSKPGGSFGAPV RRFAIALGCEVKHAGELVYADDLDVSRARAFEPIGISCRICERAECHQRSVPPLERRL QVTPDERGVLPYRVG" gene complement(520945..522978) /locus_tag="RTM1035_02470" CDS complement(520945..522978) /locus_tag="RTM1035_02470" /note="COG0438 Glycosyltransferase" /codon_start=1 /transl_table=11 /product="Methyltransferase FkbM" /protein_id="jcventer:1101493006646_RTM1035_02470" /db_xref="CDD:30787" /translation="MAKSATIKTAPTPVAAAPVPVLNLPMSRGNPYQPLLYAAPDAGF RTEPLAKTEITDLPRLLAEGHRLLHLHWDDLIFGRSRDSAANANEAERDLAALAAFKA GGGRILWTVHNRTPHRDMDPETFRAARARVVTLADLVHVHTPDAALYMQRDWGVDPAR LRILPHPSYLGHYEPAETSLGRDLPDCAARAFLFFGAFRANKGLDTLVDTARTLIRRD VPFHLHLCGRAARSHQKLFRALQDTDCVTLTDEAVPDEQVAGIFARAQVFVAPFGNLF TSGSVMLAQGFGLPVIGPDTEALRAHVAPENHDLLYDPGAPRGLLRMMTRLVEMPNDE LRSRRAAALALAQDRAPARIAAQMMQVLADLRDGTGASLQAVQPTPIAAAHPATPAPS AQARAQQRLADLTRTLGLTDPLRILDIGANPMNHDAPYKELLAAGHAHVTGFEPQPEA LAALNARKSPQETYFPDVVGDGATHRLNLYRGSGLASLLEIRQPTLDHLLGLRRAARP TGHVDLPSRKLDEIEGIGRVDFLKIDVQGAEAMIFTHAQTALSQTLAVQSEVNFFPLY DNQPSFGEIDRLLQAHGLVPHSFLHIEKRLLRSRWLGRIADATPQQMLDGDILYLRDL SRPDTLDSTDLRKIALLCDTCYGFTDITLRCLEILVERGEIKPRVAERFIDSL" gene complement(523138..524163) /locus_tag="RTM1035_02475" CDS complement(523138..524163) /locus_tag="RTM1035_02475" /note="COG1879 ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="periplasmic sensory protein associated with the TorRS two-component regulatory system" /protein_id="jcventer:1101493006646_RTM1035_02475" /db_xref="CDD:32063" /translation="MLALLAPLPLAADPWALQTHTVPFDYTSPARPLTYTPLDRAASP WTLCISYPHLKDAYWLSVNFGMVEEAQRLGVGFRLVEAGGYPNLDRQIEQITNCVAQG ADALVVGTVSFEGLTPTVQALSEQVPVIATVNDIADPGIAAKAAVSWYDMGAITGRFI AKRHPKGSAPVRLAWFPGPQGAGWVSFVEAGFRDAIAESAAEIVLTKYGDTGREIQVT LVEETLDSGVAIDYIVGSAPTAEVAVSILRARGLEGQINIVSDYMSHAVFRGIRRGRI LAAPTDFPIMQGKLAIEMAVRAIEGTLETRHAGPQIMLVTPDMVGNTDLAETLAPASF IPVFELD" gene 524263..527178 /locus_tag="RTM1035_02480" CDS 524263..527178 /locus_tag="RTM1035_02480" /note="COG0642 Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="Hypothetical sensor protein TorS" /protein_id="jcventer:1101493006646_RTM1035_02480" /db_xref="CDD:30987" /translation="MKSRTGLGARLLAAFLVIAGLPALAGFFGWFELRDVTQAQQQLY DRSIPVLSDMRRFTEESSAIITVAPELAAVDDEAARRDRAAYLGARVAALSDHLSRFQ AEHGGGSGGELTRAVVAMEAGIAELDRLVKQRLSLVQARREGLDRALGATSALLNMAD TLVANAEMSTAAVISNLYDDDTGSAQHLATLDKLIEVDLFELGLMFELRSRTAEIGLL FNRIAGLSDAAGLVPIRATLGERTEIVARRVAAIRDPGRAAQAQTLLGTILSLSDPAG PGGLLGLTEGILELDGRIESAQAALRVSADGLHVAVTDLASRVQAEAQRAGAASLEVI RATRLRSAGAAGLALLLSLAVLWFYVRGNISRRLDNLSDMMTRLAAGQLDMRVAPRGN DEIAGMERAVEVFRRQAIANRTLEEARRRNEEELARHRNALQELVAEKTEALRGEVEA HAVARQKAEAADRAKSEFLAMMSHEIRTPMNGVLGMLRTLSAEGLPDAQLEQLRAARA SGESLLTILNDILSYSKTELSGAHLERLVFSVAEVMQVIVTLLDPGAREKGIVLWLDL PEDAPAAVMGDMAKLRQILFNLVSNAVKFTEEGEVVLRLRVRAAGAGRVTLILEVSDT GKGISAQARQRIFEAFEQEDGLTARRYGGTGLGLAICRKFAEVMGGALSVESTPHVGS VFTFMADFELADPALLAESVPEWTPERAGRSLHALIVEDHSVNQMVARSYLERMGHTA VCVDSGEDALDLLKRERFDLVLMDVNLPGLSGTDATRRLRGLPEGQDLPVIGISAHVQ EEEVAQQLDAGMDCFVAKPVSPERLAAAIAQVTGGQRRGVFLSPRSVSLPMGGARDGL GAMLADLGPEQTAAAIRLYLDGVGEEARALAAAVDAEDAAGVAKVAHRMKGAAGNFSL PGLSAGLRALEEAARAGDAGAMRGAMAAVPAEIAAARATLLRATDGLADQSKVAVNT" gene complement(527151..527852) /locus_tag="RTM1035_02485" CDS complement(527151..527852) /locus_tag="RTM1035_02485" /note="COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component transcriptional regulator, winged helix family protein" /protein_id="jcventer:1101493006646_RTM1035_02485" /db_xref="CDD:31088" /translation="MPRAAHIVIIEDEPVTRTTLAEYLMSHGYTVTAFDSAERAETML GSDRADLLLVDITLDGKDGLQITREQRARSDIGIILTTSLSDDVDRIVGLELGADDYV CKPFNRRELLARIKNLLRRTEAQRRLSRQNLRFHGFSFAFATRQLTGPDGQPIRLTRA EYEVLAELLRHPGAVLSRDRLMTVITHRQEHPDTRTVDVIIRRLRTKLEEDPGAPRLI TTAHGEGYVFTATLD" gene 528012..528953 /locus_tag="RTM1035_02490" CDS 528012..528953 /locus_tag="RTM1035_02490" /note="COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter, periplasmic substrate-binding protein" /protein_id="jcventer:1101493006646_RTM1035_02490" /db_xref="CDD:32296" /translation="MTQRLRLIGGAAVLALAATGALADSEDPIVIPIHNWSSQIVMSN VVGQIFESMGNNVEYVSTDSQSVYESVRLGDVALEMEVWEGAFGASFRAALEKGGLHD AGDHNAVTREDWWYPMWTKEACPGLPDWQALNECAALFATPETGDAGRFLGGPVDWLK HDQERVDGLGMNFKVVNAGSAAALWAEIGAAEKTKKPIVVFNWTPNFAEAVWPGEFVE FPTWVEGCDKDPAVGPNPDKTYDCGNPANGYMKKAAWDGMKEKWPDAYEMLTKISFTN PQIAEMAKLVDIDEMEPEEAATHWLEENGDVWKVWIN" gene 529027..530058 /locus_tag="RTM1035_02495" CDS 529027..530058 /locus_tag="RTM1035_02495" /note="COG4175 ABC-type proline/glycine betaine transport system, ATPase component" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter, ATP-binding protein" /protein_id="jcventer:1101493006646_RTM1035_02495" /db_xref="CDD:48327" /translation="MPVSEPVISCRNVWKLFGPAPEAYLGGLKGDPGFEVIRQAGYIS AVRDVSLDIARGEMLVIMGLSGSGKSTLVRCLSRLIEITGGTVSVEGQDIGALSETQL IELRRNKMGMVFQSFGLLPHRTVLENVAFPLEMRGQNRATRRKRALEVIELVGLGGRE DYFPRELSGGQQQRVGIARSLAIEPDIWFLDEPFSALDPLIRREMQDEFLRLQGMLGK TIVFITHDFDEALRLADRIAIMKDGAVEQCDTPDQIVLNPATDYVRKFTEEIEKARVV HASGLARPINGVTPEGLPVAGKSTIRALARQLIDDPRESLPVADEAGRITGVLSRKEA LDVLLGGQA" gene 530055..532010 /locus_tag="RTM1035_02500" CDS 530055..532010 /locus_tag="RTM1035_02500" /note="COG4176 ABC-type proline/glycine betaine transport system, permease component" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter, permease protein" /protein_id="jcventer:1101493006646_RTM1035_02500" /db_xref="CDD:33916" /translation="MSESALPLATTAKPRLNPAWVVLGLALCLILARPYLPEGLMRPV EGMILPLADWINAVFTWLRDDLGLIHVTRAFADGIEWLLDVTANILYGKNRWPRIGPL PWIVVALSAGCLGYWLGGLRLALLAGGTFVWIALMGQWQWAMETLSVIVVAAPVSVLL GLMMGVATWRWRWVEAVMNPVLNIAQSLPHFAYMIPIVVFIGVGPKAGAIVTIIFSVP PMIRMTLLGLRKVPPEVIESGKMCGSTSWQLMTRVRIPTARTEILVGVNQVIMQCLAM VVLASFIGMPGLGQKLLQLLQALKIGRSIEIGITIVLLAVALDRCSKAWAERQPVHHE PGLSWTARHRVMSVWAVLMVAGFALSAVVPFFAEVGRGQSLSLADPLDAMMSWVIVTL DPVTQWLRWFLITWVLIPVRDALLWLPYTAVLALVAAAGLAVGGWRSALICVGFIGYI AITGWWDRAMITVYTVLVAVAVATSFGFPLGIWAARHEARAKRVLLLCDSLQTFPSFI YLIPVIMLFGVNDVAVVGAVVLFAAVPLIRYTIEGLRGVPEAVIEAADMSGATRGQSL WHVRLPLALPTIMVGINQSLMFSLFMVIIAAFIGTQDLGQEMQRALSSTDVGKGLVLG FAVAFIGLAADHLINKMAEGRRRTLGL" gene 532185..534476 /locus_tag="RTM1035_02505" CDS 532185..534476 /locus_tag="RTM1035_02505" /note="COG1982 Arginine/lysine/ornithine decarboxylases" /codon_start=1 /transl_table=11 /product="Lysine decarboxylase" /protein_id="jcventer:1101493006646_RTM1035_02505" /db_xref="CDD:32165" /translation="MKFHFPIVIIDEDFRSENSSGLGIRAMAKAMEDEGFEVLGVTSY GDLSQFAQQQSRASAFVLSIDDEEFSPGPDIDPVITNLRNFVQEVRRKNADVPIYVYG ETKTSRHLPNDILRELHGFIHAFEDTPEFVARHIIREAKIYLEGIQPPFFKALLDYAE DGSYSWHCPGHSGGVAFLKSPIGQMYHQFYGENMLRADVCNSVEELGQLLDHDGAIGA SERNAARIFNADHCFFVTNGTSTSNKMVWHHTVAPGDVVVVDRNCHKSILHSIIMTGA IPVFLRPTRNNFGIIGPIPRGEFEIDAIKAKIRANPLLKGVDPDTVKPRILTLTQSTY DGVLYNTEVIKDLLDGYVENLHFDEAWLPHASFHPFYSSFHAMGRSRERPLHSVTYVT QSIHKLLAGISQASHVLVQDSQTTKLDRHLFNEAYLMHTSTSPQYSIIASCDVAAAMM EPPAGTALVEESIAESLDFRRAMQKVDAEFGDDDWWFQVWGPDVLDEEGIGEMRDWVL KRTDAHGVQASDGEESWHDFGEMAPGFNMLDPIKATIITPGLNLDGRFEQTGIPASIV TKYLAEHGVVVEKTGLYSFFIMFTIGITKGRWNTLLTALQQFKDDYDKNQPMWRAMPE FCAKQPRYEGMGLRDLCQHVHTLYAKYDVAILSTEMYLSDLTPAMTPSEAFAHIARRT TERVAIDDLEGRVTTSLVTPYPPGIPLLIPGEVFNKTIVQYLRFNREFGRECPGFETD IHGLVQEVGEDGVTRYFADCVAG" gene complement(534486..535835) /locus_tag="RTM1035_02510" CDS complement(534486..535835) /locus_tag="RTM1035_02510" /note="COG0174 Glutamine synthetase" /codon_start=1 /transl_table=11 /product="glutamine synthetase" /protein_id="jcventer:1101493006646_RTM1035_02510" /db_xref="CDD:40220" /translation="MTTTNIRQWLQERPEIESVFACVCDLNGAMRGKRLPIEKAKSIM DDGLRLPLSVLSVDIWGEDIENNELVFETGDSDGICEHTGRPIVMVNWTSRPSALVMF WMHTEDGSPFPGDPRHALSNIVQRYKARGLTPVVATELEFYLCDPREAQPRPPCSPVT GKRLDSDGALSLDELEHFDEFLNDVYDACHEQGIPADAAISENGAGQFEINMVHVADP LQAADDAVLFKRLVRGIARKHGMAATFMAKPYGDRSGSGFHVHFSLVDENGVNLFDNG GDTGTPLLLNAVGGLLETMHENTLTFAPHQNSYRRLLPGTHAPTGISWGYENRTAAIR IPGGNHKARRIEHRVAGADANPYLVLGSILGGALIGIEQGIAPCPPIDGDAYSQKLDH LPLDWATAIQAFRRGRHVQDIFSRRLQTMLVECKMQELKRFTRYVTDFEYDAYLESV" gene 536032..537570 /locus_tag="RTM1035_02515" CDS 536032..537570 /locus_tag="RTM1035_02515" /note="COG0728 Uncharacterized membrane protein, putative virulence factor" /codon_start=1 /transl_table=11 /product="integral membrane protein MviN" /protein_id="jcventer:1101493006646_RTM1035_02515" /db_xref="CDD:31072" /translation="MKPVRLLSGILTVGGWTLLSRLLGFVRDVLIASYIGPGAVMDAF VAAFRLPNMFRRFFAEGAFNAAFVPMFSKRLEAGDNPLGFAALACSGLSLVLLGLTGL CMVFMPALVWATAEGFVGDARFDLTVEFGRIVFPYIFFISLAALFSGMLNAAGHFAAA AAAPVLLNVLLIGAMSFAAVTGGAVAQALVWTIPVAGVAQLALVWHATRRAGLSLPLV RPRWTPEMAQLVRIAIPAALAGGVVQINLVVGQLVASNTEKAVSWLYSADRLYQLPLG VVGIAVGIVLLPDLSRRLKAQDDVGARMALSRAGEIALALTIPCAVALIVIPIQLVSV LFERGAFGADDSAATALAVAIYGLGLPAFVLQKILQPLFFAREDTRSPFRYAVWAMAV NGVLAVGLAMLIGWIAAAIATTIAAWIMVVQLAAGARQFGEVARFDAQFRRRLWRICL ASVLMGAVLWGAGVVLGPLFGMGGWRWLALLVLIAVGTLAYALFGQGLGAFRIQEIRG RLRR" gene complement(537793..538479) /locus_tag="RTM1035_02520" CDS complement(537793..538479) /locus_tag="RTM1035_02520" /note="COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid)" /codon_start=1 /transl_table=11 /product="rhomboid family protein" /protein_id="jcventer:1101493006646_RTM1035_02520" /db_xref="CDD:41727" /translation="MPDQGPPAPVNPLPPFLIALFLVIMGVEAAFTLGARGLVGGPDA VGWRAAAIQDYGFNGEILGWMLEHHAYPAEHLRRLLSYAFIHGSFTHALFAGVLLLAM GKFVSDVFRHWAVLVLFAVSTVVGAVIFGLVAPGRPWLIGAFPGVYGLIGGFTYIMWL RLGQMGTNQVRAFTLIGVLMGLQLVFGLLFGGNATWIADVSGFASGFLASFVLSPGGW SRLRAKLRHD" gene 538554..539582 /locus_tag="RTM1035_02525" CDS 538554..539582 /locus_tag="RTM1035_02525" /EC_number="6.1.1.2" /note="COG0180 Tryptophanyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="tryptophanyl-tRNA synthetase" /protein_id="jcventer:1101493006646_RTM1035_02525" /db_xref="CDD:30529" /translation="MTEAAFTPRVFSGIQPSGNLHLGNYLGALKRFAEAQNKGIQTLY CMVDLHAITVWQNPADLARATRELAAGFIASGLDPAKSILFNQSQVAEHTQMAWVFNC VARMGWMQRMTQFKDKAGKNAQNASLGLFAYPALMAADILTYHATHVPVGEDQKQHLE LTRDIAIKFNHDYGVEFFPIPEPVIEGAATRVMSLRDGSNKMSKSDPSDMSRINLTDD ADTIAKKIRKAKTDPEPLPSEAAGLEGRPEARNLVNIYAALADMTVDQVMAEAGGKPF SEFKPMLADLAVDRIAPISTEMARLMQDLSEIDRILADGAARARTIAAPILRQTYEIM GMVGTREV" gene 539654..540136 /locus_tag="RTM1035_02530" CDS 539654..540136 /locus_tag="RTM1035_02530" /note="COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes" /codon_start=1 /transl_table=11 /product="hydrolase, NUDIX family, NudH subfamily protein" /protein_id="jcventer:1101493006646_RTM1035_02530" /db_xref="CDD:40389" /translation="MTPEEIAKLPYRRCVGVMLVNAAGQVFVGQRIDNEVPAWQMPQG GIDKGESVTEAALRELWEETGVTADKVRVEAETTGWLTYDLPQEMVPRIWKGRYRGQE QKWVLMRFLGQDTDVNIATDHPEFSEWRWLPPSDLEANIVPFKRAVYSRVLDEFGALL " gene 540133..540618 /locus_tag="RTM1035_02535" CDS 540133..540618 /locus_tag="RTM1035_02535" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02535" /translation="MIRAAVLALGLVLAGPAVALSCFPQDVAETYRRAAEAAETYIVV HGRLAFDPARLPSTDMIPQQKPAHTLIPARLTGQALTKGGFDQAFDRAITLDVQCFGP WCASAVPGTQYLGFLERRDGGYVLAVDPCGGMGHAEPTPAMLDKALRCLQGGACTAER R" gene 540668..543565 /locus_tag="RTM1035_02540" CDS 540668..543565 /locus_tag="RTM1035_02540" /note="COG0587 DNA polymerase III, alpha subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase III, alpha subunit" /protein_id="jcventer:1101493006646_RTM1035_02540" /db_xref="CDD:30932" /translation="MGLGISAAMPFAELSATSNFTFLTGASHPEEYIRHAAALGLSGV AIADVNSVAGIVRAHAAAREIAREVAARQALEARQGPIGPPAPQPAAPPDWANCPRLI PAARLVLREGIEITALPVNRGGWASLCRLISLGRQRAIKGACDLGLADVLAGAAGLHL LVHPAPGRAWQAQVLQLAARWGGSVALLLSPRYDGRDPARFERLTGLAARLGLPTVAA AAPILHRGYRRRLADVLSAIRLGVTVDRLGRHALRNAEQRLRSEEEMRRLFAGHEGAV SRAAALAARLDFSLDELRYEYPSEVAENETPAQRLRRLAEAGLEWRYPGGAPARVRGM MEHELALIAKLRYEPYFLTVHDVVAFARSRGILCQGRGSAANSVVCYCLGVTSVSPEI GTMVFERFVSEARDEPPDIDVDFEHERREEVIQWIYERYGRHRAGLCATVIHYRTKRA IREVGRAMGLSEDLLGAMTSQIWGHGGEGALEPARLAEIGLDPRDPRLARTLALIREI IGFPRHLSQHVGGFVITEGRLDELVPIENASMEGRTVICWDKDDIDALGILKVDVLAL GMLTCIRKAFDLLGQHRGQVYSLATLPPEDAQVYEMLSRADSLGVFQVESRAQMNFLP RMRPRTFYDLVIQVAIIRPGPIQGDMVHPFIRRRNGEEAVSFPSDDLGRVLGKTLGVP LFQEQAMQIAIIGAGFTPEEADRLRRSLATFKKHGNVSEFRARFLRGMQANGYDSDFA ERCFSQIEGFGSYGFPESHAASFAHLVYASAWLKCHHPAIFACALLNSQPMGFYAPAQ IVRDAREHGVTLRPVCINASYWDNTIEPDSRGRLALRLGFRQIKGVAQDEADWIAAAR GNGYVGPEDVWRRAGVAPAALTRLAEADVFAALGLSRRDALWQARAIGAERPLPLFAR DIDGEGIVEPAAHLPAMTLGEEVVEDYTALRLSLRAHPLALLRHILTPPGL" gene complement(543646..544203) /locus_tag="RTM1035_02545" CDS complement(543646..544203) /locus_tag="RTM1035_02545" /note="COG0678 Peroxiredoxin" /codon_start=1 /transl_table=11 /product="Redoxin" /protein_id="jcventer:1101493006646_RTM1035_02545" /db_xref="CDD:48562" /translation="MVTCLSPAYTYIHPETLDRQGTTMTLSSGDKLPDATLLKLGEKG PEAVDLKSLTAGRKVVIFAVPGAYTPTCSAAHVPSFIRTKAQFDAAGVDEIICVSVND PFVMKAWGEATGATEAGITMLADAESAFTKAIGLDFDAPPAGLLARSKRYAMAVEDGT VTVLHVEESPGTCEVTAGESLLAAM" gene 544225..545427 /locus_tag="RTM1035_02550" CDS 544225..545427 /locus_tag="RTM1035_02550" /note="COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases" /codon_start=1 /transl_table=11 /product="pyridine nucleotide-disulphide oxidoreductase family protein" /protein_id="jcventer:1101493006646_RTM1035_02550" /db_xref="CDD:31443" /translation="MTGVVVIGAGQAGASLVAKLRSEGYDGPITLIGEEPVPPYQRPP LSKKYLLGDMALERLYLRPESYYAEAGIDLRLNARVTAIDRAAQEVVIGTERLGYAHL VLATGSRPRHLPAAIGGELGGVHVVRTLADVDAMAPGFVQGARVLIVGGGYIGLEAAA VAASRGMQVVLVEMAPRILQRVAAKETSDYFRALHGRHGVDIREGVGLERLLGDGQVS GARLTDGTEVAVDMVIVGVGIVPDTALAEAAGLEIDNGIAVDAQGRTSDPTIWAVGDC ASFPHGEGRLRLESVPNAIDMADCVAGNILGAAVAYVPKPWFWSDQYDVKLQIAGLST GYDRIVTRDGAASVSFWYFRGDQLLAVDAMNDPRAYMVGKRLIDAGKTADPAVVADAG ADLKVLLG" gene 545424..545981 /locus_tag="RTM1035_02555" CDS 545424..545981 /locus_tag="RTM1035_02555" /note="COG0742 N6-adenine-specific methylase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02555" /db_xref="CDD:31085" /translation="MRIIGGAHRGRALASVGKGDVAAHLRPTSDRVREALFNVLAGGY GDPVTGARVLDLFAGTGALGLEALSRGAQAVSFIESGRKAQSLLRQNIAFCRAEEETR VFPLDARKPGNNPMVPHDLVFLDPPYGKGLGEEALAAALEGGWISDGALIVWEESAAI TPPEGMRMIEERRYGDTMIRFLERG" gene complement(546208..547461) /locus_tag="RTM1035_02560" CDS complement(546208..547461) /locus_tag="RTM1035_02560" /note="COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein" /protein_id="jcventer:1101493006646_RTM1035_02560" /db_xref="CDD:30999" /translation="MDNPARTHILGGMTHDSDLLIVGGGLNGPALALAAAQAGLSSTV IDALPEPTRKNAAFDGRSYALALASVRLLQNLGIWDRVAEHAQPMLEIKVSDGRAGEG PSPFFLHFDHAEIEEGPMGHMLEDRFLRRALIEAMAEQPLITQVSNDTVTAQESVATG VTLTLASGKTLTGRLLIGADGRSSGTAARAGIRRTGWGYGQTALVAAIEHELPHHGIA HQFFMPPGPLAILPLPGNVSSIVWSETDATAARFAALPDADFMEVLRPRFGDFLGAIK LRGARYTYPLSLTVANSFVAERLALIGDAAHGMHPIAGQGLNAGLRDVAALAQVMTEA NRRGEDIAAPDVLARYQQWRRFDTATLALATDLTNRLFSNDNPILRTARDLGMGAISH MPRLRRGFIREAAGLTGDLPELMKG" gene 547528..548853 /locus_tag="RTM1035_02565" CDS 547528..548853 /locus_tag="RTM1035_02565" /note="COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases" /codon_start=1 /transl_table=11 /product="amidase family protein" /protein_id="jcventer:1101493006646_RTM1035_02565" /db_xref="CDD:41475" /translation="MTAGDLGRGIARGEIDPEALCETYLAAITAHPLRDRIYSAVTES RARAEAAAASARAKAGQRLGLLDGVPVSWKDLFDSAGVATEAGSALLKGRVPERDAEV LRNGTAAGLVCLGKTHMSELAFSGLGLNPVTATPPCVNDPDAVPGGSSSGAAASVAFD LAPCGIGSDTGGSVRIPAAWNDLVGLKTTSGRVSLQGVVPLCLRFDTVGPLARSVEDC ALMLAALDGRKAADLRGASLLGLRFAVLRTGVMEDIRPEPARAHAAALEMLRDAGAVI DEIEAPEVAEALPLSPVLFTGEAYGLWREVIEAAPDKMFAPILERFRSGKDISAADYV AGWRKLEALRAAWTARVAGYDAVLMPSAPNLPPDQARLLADPDYYVTENLLTLRNTRV GNLLGLCAVTLPTGVPSCGLMLCGQPYGEERLLRVAQAVEDILCPRRED" gene 548858..549478 /locus_tag="RTM1035_02570" CDS 548858..549478 /locus_tag="RTM1035_02570" /note="COG2808 Transcriptional regulator" /codon_start=1 /transl_table=11 /product="negative transcriptional regulator" /protein_id="jcventer:1101493006646_RTM1035_02570" /db_xref="CDD:32638" /translation="MHPNPAFRQTPSERNLEFARARGFGILAVCSPEGPLMSHIPFLL NADGTRAEFHLVRSNPIARLLSGPLRARLAIEGPQSYVSPDWYGVEDQVPTWNYVAVH LVGEVTLQPQEGMRDLLDRQSAEFEARLAPKPEWRAEKMTPEVLERMMRQIVPCAMRV DEIAGTWKLGQNKPEEVRLRAADHLGPAGQGQESDLLAEWMRAPPA" gene 549540..550142 /locus_tag="RTM1035_02575" CDS 549540..550142 /locus_tag="RTM1035_02575" /note="COG0625 Glutathione S-transferase" /codon_start=1 /transl_table=11 /product="glutathione S-transferase family protein" /protein_id="jcventer:1101493006646_RTM1035_02575" /db_xref="CDD:48132" /translation="MKLISSPLSPFVRKVRVLLLESGLDDQVEVVDVTTTPLETDPQA AAANPLGKIPALVRLDGPAIHDSRVITRYLDARADGRFYPEARLWEVLTLEAIAEGIM EAALAMTYEARFRPEEIRYAPWVEGQWAKVARALEAVEGRWMSHLAGPLDMSHIALGC ALGYLDFRHDARGWRVGHPALEAWYAKMAARDSMMRTAPA" gene 550365..550925 /locus_tag="RTM1035_02580" CDS 550365..550925 /locus_tag="RTM1035_02580" /note="COG0723 Rieske Fe-S protein" /codon_start=1 /transl_table=11 /product="Ubiquinol-cytochrome c reductase, iron-sulfur subunit" /protein_id="jcventer:1101493006646_RTM1035_02580" /db_xref="CDD:48646" /translation="MSHAEDHEGTRRDFLYYATAGVGAVTAGAAIWPLINQMNPSADV QALSSIRVDVSGVEPGTQISVKFLGKPVFIRRRTEKEIEAARAVELAELPDQNAQNRN DLALDASDQNRTLDEAGEWLVMIGVCTHLGCVPIGDGSGDFGGWFCPCHGSHYDTAGR IRKGPAPENLWIPVATFLDETTIQLG" gene 550938..552260 /locus_tag="RTM1035_02585" CDS 550938..552260 /locus_tag="RTM1035_02585" /note="COG1290 Cytochrome b subunit of the bc complex" /codon_start=1 /transl_table=11 /product="cytochrome b/b6-like protein" /protein_id="jcventer:1101493006646_RTM1035_02585" /db_xref="CDD:31481" /translation="MSGIPHDHYEPKTSGEKWLHSRLPIVGLLYDTIMIPTPKNLNWM WIWGIVLTFCLVLQIVTGIILVMHYTPHVDLAFASVEHIMRNVNGGHFIRYLHMNGAS LFFVAVYLHIFRGLYYGSYKAPREVTWIIGMLIYLMMMGTAFMGYVLPWGQMSFWGAT VITGLFGAIPFIGDSIQTWLLGGPAVDNATLNRFFSLHYLLPFVIAALVALHIWAFHT TGNNNPTGVDVRRTSKDEAARDTVPFWPYFVIKDLFALAVIMVVFFAVVGFMPNYLGH PDNYIEANPLVTPAHIVPEWYFLPFYAILRAFTGDVWVVMFASWITGGIIDAKFFGVL AMFGAIAVMALAPWLDTSSVRSGRYRPMFKWWFWLLVIDFVVLTWVGAMPAEPPYSTI SLIASAYWFAYFLVILPLLGVIEKPEAQPATIEEDFDAHYGKAHTPAE" gene 552271..553122 /locus_tag="RTM1035_02590" CDS 552271..553122 /locus_tag="RTM1035_02590" /note="COG2857 Cytochrome c1" /codon_start=1 /transl_table=11 /product="ubiquinol--cytochrome c reductase, cytochrome c1" /protein_id="jcventer:1101493006646_RTM1035_02590" /db_xref="CDD:42161" /translation="MTMFKTTGIAALVALSLSTGGALAAGGEGHIEDVAFSFEGPFGK FDQNQLQRGLKVYTQVCAACHGLQYVPLRTLGDEGGPQLPQDQVFAYSEQFEVFDPEL DDFRPATPTDHFPAVTSASAPDLSLMAKKRAGFHGPYGTGLSQLFNGMGGAEYIYSLM VGYHEAPECAPEDFTGTYNAAFTAGGYPDECKDEDGHHTVPGSWIAMGQPLWGDDVEY DDGTVATLEQQAEDVAAFLMWTAEPKMMARKHAGLTGVIFLTILSVLLYLTNKRIWAP IKGKKTS" gene 553307..554347 /locus_tag="RTM1035_02595" CDS 553307..554347 /locus_tag="RTM1035_02595" /note="COG3239 Fatty acid desaturase" /codon_start=1 /transl_table=11 /product="putative fatty acid desaturase" /protein_id="jcventer:1101493006646_RTM1035_02595" /db_xref="CDD:33051" /translation="MLDQPHPAPLPPETRAGREWAQLLAKYREPSSPRAAFELAVTVG PFLALWGLAWWALSLSYVLSVVLALCAAPFLLRLFAIQHDCGHGAFFKSRSMNDWLGR VLGVVTLTPYDVWRHSHSIHHSSSGNLGRRGIGDIDTLTVAEYAALTPFQRLKYRVYR NPLVLFGLGPGYIFLLENRLPLGFMGKARYWVSAMATNAALLLVLGLVGWFGGLMPIL LIFLPSTVLAATAGVWLFYVQHQFETTHWEAEENWQLHDAALEGSSHYVLPGWLQWLS ANIGIHHVHHVNSRIPFYRLPEALRDHAQLAEINRMTIRESLANARLHLWDEQGRRLL SFAEAQAVIERA" gene complement(554523..555662) /locus_tag="RTM1035_02600" CDS complement(554523..555662) /locus_tag="RTM1035_02600" /codon_start=1 /transl_table=11 /product="fatty acid desaturase family protein" /protein_id="jcventer:1101493006646_RTM1035_02600" /translation="MIPADKVAQLHRALPFWMSLILLPVAVLGALQGGWTVLLLPMTT WYFFSILDAFLGLYTENADLETRDDQLTWYRAITLIWAPLQFGLLYWLIWYVTGPGDA HLSPLETILLFFGVGVITGTVGINYSHELMHQKNRSERFLGDVLLAMVLYSHFRSEHL LVHHRYVGTPRDPVTARYNEGFHRFFPRVLRQSWQSAFKAEAEMLARRNLPWHDLKNP FFKYWALQGFMALLAVLIGGWIGLGLFFWQAFVAIWQLELVNYIEHYGLTRKHLGGGK YEHVQPRHSWNAAHKASNWLLINLQRHSDHHYKPDRRFPLLQNYTEADAPQLPYGYPV MTMAAMVPPIWRRVMNPRVRRWREMYYPEITNWRPYNRASTPMPR" gene complement(555693..556754) /locus_tag="RTM1035_02605" CDS complement(555693..556754) /locus_tag="RTM1035_02605" /note="COG1194 A/G-specific DNA glycosylase" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="jcventer:1101493006646_RTM1035_02605" /db_xref="CDD:31387" /translation="MRYFAEAESLLAWYDTHARDLPWRISPAARAAGAHPDPYRIWLS EVMLQQTTVAAVKSYFLRFTTLWPTVADLAAAEDAQVMGEWAGLGYYARARNLLKCAR VVVRDHGGRFPDTLDGLRALPGIGPYTAAAIAAIAYDQPHVVVDGNVERVMARLYDIH TPLPTAKRALTEAAARLTPRLRPGDYAQAVMDLGATICTPKSPACGLCPWRAPCAARA AGTAQHLPRKQPKTPKPVRHGHAYVARRADGAWLLERRPDSGLLGGMLGWPGSDWGES PLHTPPIAADWQQLEAEARHTFTHFHLRLTVHVAIVPDGVPPERGMFLSDAAFRPTEL PTLMRKVFDLARAALNYAP" gene 556837..557346 /locus_tag="RTM1035_02610" CDS 556837..557346 /locus_tag="RTM1035_02610" /note="COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02610" /db_xref="CDD:46536" /translation="MTSRKAATYGFKRTSALLQTSIRRASESRGFAQSRLLTHWAEVV GDDIAAIARPVEVSYARQGMGATLTLLTTGAQAPMLEMQNEKLRERVNAVYGYNAIAR IRITQTAPVGFAEGQVEFTHRPKVAALPVVAPETLQTATSLAAPVTDDGLRAALERLA RNVLTKSQH" gene 557374..557982 /locus_tag="RTM1035_02615" CDS 557374..557982 /locus_tag="RTM1035_02615" /note="COG1651 Protein-disulfide isomerase" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein, DsbA family" /protein_id="jcventer:1101493006646_RTM1035_02615" /db_xref="CDD:31837" /translation="MKHLIATGALALAMLTGPAVAQEAAPDTSQIVEMTMGPEDAKVT IIEYASFTCPHCANFHKGPLKQLKAEYIDTDKVHFIYRDVYFDRFGLWASMVARCGGP EKFFGISDMIYEQQGEWTQGEPAAIADNLRRIGKVAGLEPDAVEACLNDTEKAKALVA WYQENAEAHGVESTPTLVINEQKYANMAYDDLKAIIEEKLAE" gene 558098..559447 /locus_tag="RTM1035_02620" CDS 558098..559447 /locus_tag="RTM1035_02620" /note="COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02620" /db_xref="CDD:30510" /translation="MKDDNFLREMNARHLWHPMGHPGEQQANAPKIIKSAAGVRITDI DGHDPVDAVGGLWCVNLGYSNDVVKQAISDQLWQLPYYSAFAGSTNPAAIEASYAVQE FFAEDGMTRVFFTSGGSDSVDTALRMARQYHRLRGEPTRTKFLSLKKGYHGTHWGGAS VNGNNRFRITYEPLLPGCFHLPSPYTYRNPFDETDGAKLAEKIAAAMVDEIEFQDPST IAAFIMEPIQGAGGVIVPDASFMKHMRDICDRYGILMISDEVITGFGRTGDWTGARHW GVKPDMMTIAKGITSGYFPVGGVVLGDKVAEVFEKAGPEGSIWTGYTYSAHPVGAAAV VACLSETLRLDTKSNAAVRGTQLYEGVKKLAEKYDIIGDVRGGHGLMMGIELVSDRAK KTPMDAATMKRVHQATYEAGAMVRLGAHNILMSPPLVISEAEVNVILSALDAGFAAA" gene complement(559531..559815) /locus_tag="RTM1035_02625" CDS complement(559531..559815) /locus_tag="RTM1035_02625" /note="COG0330 Membrane protease subunits, stomatin/prohibitin homologs" /codon_start=1 /transl_table=11 /product="uncharacterized conserved coiled coil protein" /protein_id="jcventer:1101493006646_RTM1035_02625" /translation="MDKETYQNKLQAQLDQWKAEIDKLQAQSREASADMQIKYQEQIK ELREKRAEMAAQYDKIEAASIEAWKDFKTGADEAWDNMSKAMKSAWGRFG" gene complement(559940..561478) /locus_tag="RTM1035_02630" CDS complement(559940..561478) /locus_tag="RTM1035_02630" /note="COG1115 Na+/alanine symporter" /codon_start=1 /transl_table=11 /product="sodium:alanine symporter family protein" /protein_id="jcventer:1101493006646_RTM1035_02630" /db_xref="CDD:31312" /translation="MKRYAFPAAAAVGAALLAMPAHAQSVDEKVNQIFASSTGWFVNL IFSNFPGTSFPWIVAWLVIGATVFTLYFGFIQFRAIGHSIALVKGDYSDPNDAGEVSH FQALATALSGTVGLGNIAGVAVAVSIGGPGATFWMILAGLMGMASKFTECTLGVKYRN EYPDGRVSGGPMYYLTKGFAERGVPGGKILAVLFSIFCILGALGGGNMFQANQAHQQI AGIVGAYPGWITGVIFAGVVFAVIVGGLKSIARVTEKVVPFMGILYVGTALIIIVMNA DQIGWAFGQIFEGAFTGLGVAGGMVGALIQGFKRAAFSNEAGVGSAAIAHSAVRTKEP ITEGFVSLLEPFIDTVVICTMTALVIIITGQLVAGPDGNYLLNEAGTAIQTVGGTSGV GLTSAAFGSAISWFPYVLAIAVVLFAFSTMISWSYYGLKAWTYLFGEGETKELVFKVI FCIFVVIGAAANLGPVIDFSDAAIFAMAVVNIIGLYILMPIVKRELDSYLSRLKSGEI KKFE" gene complement(561506..561940) /locus_tag="RTM1035_02635" CDS complement(561506..561940) /locus_tag="RTM1035_02635" /note="COG0589 Universal stress protein UspA and related nucleotide-binding proteins" /codon_start=1 /transl_table=11 /product="universal stress protein family protein" /protein_id="jcventer:1101493006646_RTM1035_02635" /db_xref="CDD:30165" /translation="MSGKFVVGYDGSVSSRRALEFAVDRARAQGGTIVLAHVLEWSPY SFLTASELEERHKRRREEMERAEKAITSTVVAELQDSGMPVETMIRYGNTADLLCRIA KEVNAVQIVIGRDGQSAIGARVFGSVAGALVQTAPVPCTIVP" gene 562199..562645 /locus_tag="RTM1035_02640" CDS 562199..562645 /locus_tag="RTM1035_02640" /note="COG3453 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02640" /db_xref="CDD:33256" /translation="MGQTLLESLMDLRLITQDFTVSPQIEVADVAALVDAGYRSILCN RPDGEDYGQPAFDAVAAAAEAAGLAVRWVPIHSGQMTQAALDEFRVALEEMPKPILAY CRSGTRCTMLWSITRFEDLGADEILRATAKAGYDMSGLVAQLERRQ" gene 562642..563361 /locus_tag="RTM1035_02645" CDS 562642..563361 /locus_tag="RTM1035_02645" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxygalactonokinase, putative" /protein_id="jcventer:1101493006646_RTM1035_02645" /translation="MTDWAAIGHDGACARAFVMQGARIVEQAAAPDQATARAQLLSMP QRVFRIGEGQGDHLPTQVIPQGGRGLAPLVQDTPPDVIDAWVRLLLIGLLQARAQWDG VAWVVGRDLSHWVHLSAGEAVSCQSFVTPRLVRLLGGAVLPSAEAMADTLSRPERLAA HLRGAEVRGDSAAITGHLLAAELAAARPYWLGQSVVLIADGSQAEGLAGALREHGAPV EHVAPESLTASALAALAGVLA" gene 563358..564578 /locus_tag="RTM1035_02650" CDS 563358..564578 /locus_tag="RTM1035_02650" /note="COG1519 3-deoxy-D-manno-octulosonic-acid transferase" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic-acid transferase, putative" /protein_id="jcventer:1101493006646_RTM1035_02650" /db_xref="CDD:31708" /translation="MSRSLSLSAYLAYARRAGRAGPVPDQVRPPGPLIWAHAVDAARA DTLVHLAERLAAQRRGLHLLLTTSSTTPARTDMAASVIWQTVPEDNLPAAEAFLAHWR PDICVWTGGDLRPALLICASRMATPLYLVDADEENLDRASWRWFPDMPRAVLGLFTEI LTRTEAAARLVRRFGAPERIVTVTGAFQEGAMTLPFNAAEREEMAGLLRSRPIWLASR IHRDELATVLETHREVSRLAHRSVLILVPDDLQDCTEMRATLEAQGWRVAVWSEGEIP SETTQVILADTRGEMGLWYRLAPVTFMGSSLVSGQHGRDPNEPAAHGSAILYGPNVGR YLNRYSRYAEAGAARIVRDSPTLTAAVQRLIAPDQAAVMAHAAWDVASRGAAVTDRIQ DMLLDRLDRLDAAR" gene 564575..565561 /locus_tag="RTM1035_02655" CDS 564575..565561 /locus_tag="RTM1035_02655" /note="COG1663 Tetraacyldisaccharide-1-P 4'-kinase" /codon_start=1 /transl_table=11 /product="Putative Tetraacyldisaccharide-1-P 4'-kinase" /protein_id="jcventer:1101493006646_RTM1035_02655" /db_xref="CDD:31849" /translation="MSLPAYWFTPPDRPGLRARLLTPWALWRARRGGADQVGWRAPVP VISVDMLAAGSVGNLPAVLAVIGQVQRLGFAPVILARGAAGPVRIDPRRHGAEEVGGA ALLAADFAPTWVAPDWAEGARAALAEGSADCLVMMGGLRDPALIKDLSIGVVDAVRGF GNGRCRPAGPLAEPLEAGLARVHLMLTVGPHAAQARFAALWGARISSPVMAGELQPLE TGMDWAGARVLAFAGGEDPALFFAMLRGLGAEPVRFEALATKEAYGPGLLARLEREAS LRRAQLVTTEEDAVRLPLAFRRKVLSLPMRLQVPDLAPLDAALTQVGLRQDK" gene complement(565566..566879) /locus_tag="RTM1035_02660" CDS complement(565566..566879) /locus_tag="RTM1035_02660" /note="COG0612 Predicted Zn-dependent peptidases" /codon_start=1 /transl_table=11 /product="peptidase, M16 family protein" /protein_id="jcventer:1101493006646_RTM1035_02660" /db_xref="CDD:30957" /translation="MIRFVLSFVLLLAALPARAEIEVREITTPGGLEAWLVEDHSIPF VALELRFRGGGSLDPEGKRGVTNLMVGLLEEGAAEMDAQGFARASESLAADFRYSVND DRVSVSARFLTENRDQAVDLLRSSLVEPRFDPDAIERVRAQILSIINASQTDPRDIVG QAFDSLVFGDHPYGSSLDGTIESVTALTRDDILAAHQGALARDRLYVSAVGDITEAEL AALLDSLLGDLPESGAPLPGNVAPNLPGGVKVTDFATPQSIVAFAQPGIDRDDPDFFA AYILNHILGGGGFESRLMSEVREKRGLTYGVYSYLADKDAAQLWMGSVASANDRVAEA ITVIRDEWDRIHTEGVTPEELENAKTYLTGAYPLQFEGNGPIADIAVGMQMEGLPTDY IVTRNDKVNAVTLDDINRVARELLDPETLTFVVVGQPVGLDSTLN" gene complement(566876..568216) /locus_tag="RTM1035_02665" CDS complement(566876..568216) /locus_tag="RTM1035_02665" /note="COG0612 Predicted Zn-dependent peptidases" /codon_start=1 /transl_table=11 /product="peptidase, M16 family protein" /protein_id="jcventer:1101493006646_RTM1035_02665" /db_xref="CDD:30957" /translation="MRHFLAGLTLALLPLAAPVSASTTDQVTHFTLDNGLDVVVIKDH RAPVVTQMLWYRAGSADETPGVSGVAHFLEHLLFKGTKTMEPGEFSATVARNGGSDNA FTSYDYTAYFQRIAADRLELVMRMESDRMTNLQLDEADILTERDVIIEERNQRVENSP GALFREQKNATQYLNHRYGVPIIGWRHEMEALDLDAALDFYRTFYAPNNAILIIAGDV TPDAVRALADTYYGPIPANPALPERARPQEPPQLAERRITMRDARVSQPYVTRSYLAP ERDSGAQEKAAALTLLADILGGGQTSLLAEKLQFQNQTAVQVGASYSGLSLDDTTFDL FVVPAPGVTLEQAEAAMDEALLTFLETGVDAEQLERIKTQFRASETYARDDAGGLANR YGQALTQGLTVADVQAWPAILQATTEEDILQAARDVLDRTQSVTGWLMAPEVTQ" gene complement(568291..568803) /locus_tag="RTM1035_02670" CDS complement(568291..568803) /locus_tag="RTM1035_02670" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02670" /translation="MAMPRKTVLTLLVATFVAGCGGRDDVTLSKIRHTGNGPDEFSII PGKPLQTPEDLASLPAPNPGGANLTDQNPLADGLAALGGNSAGGVAGNGALVNHANRY GATPAIRQTLAAEDKALRQAHGRVDVLRFLPGDDYVQAYRREWLDAYSEEQRLRNRGV LTPASPPPPE" gene complement(568855..569325) /locus_tag="RTM1035_02675" CDS complement(568855..569325) /locus_tag="RTM1035_02675" /note="COG0597 Lipoprotein signal peptidase" /codon_start=1 /transl_table=11 /product="signal peptidase II" /protein_id="jcventer:1101493006646_RTM1035_02675" /db_xref="CDD:30942" /translation="MRIVFWTAFWIFLLDQATKYLVVHAMDLRSLGAIDLWPPFINLR MAWNYGINFGILAGDDPVTRWVLIAVALVIAGAVLWWVHTEPLGRWHRLAAGLLVGGA LGNVIDRLIYGAVADFLNMSCCGFTNPYAFNVADIAVFVGAFGMVLLPSGKKPS" gene complement(569333..570922) /gene="purH" /locus_tag="RTM1035_02680" CDS complement(569333..570922) /gene="purH" /locus_tag="RTM1035_02680" /EC_number="3.5.4.10" /note="COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)" /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase" /protein_id="jcventer:1101493006646_RTM1035_02680" /db_xref="CDD:41834" /translation="MTDHAPITRALLSVSDKTGLLELGQALAARGVELLSTGGTAKAL RDAGLAVRDVAEVTGFPEMMDGRVKTLHPMVHGGLLALRDNPEHQAAMQAHGIGPIDL LVVNLYPFEETVARGGDYEDCVENIDIGGPAMIRAASKNHGFVTVVVDVADYAPLLAE LDAHNGQTTRAFRQRLAQIAYARTAAYDAAVSTWLAGAIEDAAPRRRAFAGTLAQTLR YGENPHQAAAFYTDGSDRPGVATARQVQGKELSYNNINDTDAAFELVSEFAPADGPAC AIIKHANPCGVARGATLLEAYKHAFDCDRTSAFGGIIALNQPLDAATAEEIAEIFTEV VIAPGADAGAMSIFAKKKNLRLLLTYGLADPATAGRMIKQVSGGYLVQDKDTGHIAAG DLKVVTKRAPDPRELADLLFAWKVAKHVKSNAIVYVKDEATVGVGAGQMSRVDSCRIA ARKAVDMAETLGLAAPLTQGSVVASDAFFPFADGLMTAAEAGATAIIQPGGSMRDDEV IAAADAAGLAMVFTGMRHFRH" gene complement(570947..572701) /locus_tag="RTM1035_02685" CDS complement(570947..572701) /locus_tag="RTM1035_02685" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02685" /db_xref="CDD:34930" /translation="MSTSDPLPERWPERWSRLLNRLAARRAALSRPATAFLSQPEPRS IGYLARGRQLCAGNFVFAGHLIEAPDTLIWKLDPPDAGFAAQLHGFGWLDDLAAAGDA AARARAQEWLWAWIDLYGNGTGPGWTPDLTGRRLIRWISQALFVLSGQPSQASGPFYR SLAQQTAFLARRWQAARPGLPRFEALTGLIYAGLSLEGMHPHLDPALTALARECETQI DAQGGVPTRNPEELLEVFTLLTWAAMALSESGRTAGEAHWRAIERIAPTLRSLRHADG GLARFHGGGRGLEGRLDSALATSGVKTRRTDGFAMGFARLGAGRTSVIIDAAPPPTGA ASSGAHASTLALELTSGRRPLIVNCGSGHSFGPEWRRAGRATPSHSTLVLANGSSARL SNDKRHPDWLSEAPRHVPVNLTKAPDGLRFEGAQDGYLRGHGLTHVRQLDLTLDGRAL VGEDMLLAIEETDKRRFDRALDETRMKGIAYDIRFHLHPDVDASVDMGGAAISLALRS GEIWVFRSDARAALSLQPSVYLEKTRLKPRATKQIVLSGRAMDYATHLRWSLAKAQDT PVGIRDVEEEALDPVADE" gene complement(572797..574065) /locus_tag="RTM1035_02690" CDS complement(572797..574065) /locus_tag="RTM1035_02690" /note="COG0144 tRNA and rRNA cytosine-C5-methylases" /codon_start=1 /transl_table=11 /product="ribosomal RNA small subunit methyltransferase B, putative" /protein_id="jcventer:1101493006646_RTM1035_02690" /db_xref="CDD:30493" /translation="MKKPKLTARSAAAHLLDRVLGEGRLMSDLIAGGALEPLAPADRA RAQRLASETLRGLARADRLLSRHLRKGPPLPVQNVLRLATVELAQGGESHGVVNDAVD IIGQSPRHANLKGLVNAVLRKVAEEAPRSWNDLRQPGLPDWLRGPLVEAWGKGAVTAM ERAHFAGAALDITVKSDPQGWADRLGATLLPTGSLRRSDPGQVSALPGYAEGAWWVQD AAAALPVQVLAPQPGETVLDLCAAPGGKTLQLAAAGAEVTALDLSERRMARVAENLAR TGLEATCRVEDARAHQGGPYDAILLDAPCSATGTIRRHPDLPHAKDGSDFGALITLQA EMLDHALTLLKPGGRLVFCTCSLLPDEGECQVEEALARHPGLTVDRAALAQPGIDPAW ITEEGGLRLRPDYWADLGGMDGFYIACLRF" gene 574135..574326 /locus_tag="RTM1035_02695" CDS 574135..574326 /locus_tag="RTM1035_02695" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02695" /db_xref="CDD:35067" /translation="MTDDTQTPSRDLPPAAQRALAEAEARRKAAEALDLPRELGGRRE GLEPVRYGDWEKKGLAIDF" gene complement(574345..574698) /locus_tag="RTM1035_02700" CDS complement(574345..574698) /locus_tag="RTM1035_02700" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02700" /translation="MRVALAVLLILGLAAPAMAEGFAPVTKRDRFVSLIEGRDLTRFG ITLNVTSDGQIKGRAFGRDVTGAWRWNGDYFCRDLYWGSMDLGPNCQAVRVQGNTLRF ISDQGAGQFADLSLR" gene complement(574757..575575) /locus_tag="RTM1035_02705" CDS complement(574757..575575) /locus_tag="RTM1035_02705" /EC_number="1.3.1.26" /note="COG0289 Dihydrodipicolinate reductase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate reductase" /protein_id="jcventer:1101493006646_RTM1035_02705" /db_xref="CDD:30637" /translation="MTDLPGIVITGASGRMGQMLIRTLAESPRAQLIGALERPGHDWI GQDVGRAMGGAEIGVTVTDDPLEAIARAHAVIDFTAPAATLEFAILAAQARVVHVIGT TGFEAEHLPKLDAAARHAVIIRAGNMSLGVNLLTQLTKRVAAALDEDFDIEIVEAHHN QKVDAPSGTALMLGEAAAEGRGVALERASDRARDGITGKRTRGHIGFSAIRGGDIVGE HDVIFAAAGERIVLRHIATDRAIFARGALKAALWGLGRKPGSYDMIDVLGLGDN" gene 575729..576133 /gene="rbfA" /locus_tag="RTM1035_02710" CDS 575729..576133 /gene="rbfA" /locus_tag="RTM1035_02710" /note="COG0858 Ribosome-binding factor A" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="jcventer:1101493006646_RTM1035_02710" /db_xref="CDD:31199" /translation="MRGMAKNKFHDGPGPSQRQLRVGELIRRTLSEVLMRGDIHDPDL NRISVTVGEVRTSSDLKIATAYVMPLGGEGQDDLIALLARNKNELRRMIGKKVGLKYA PDLRFRLDETFDQMDETRRLFDQDTVRRDVEG" gene 576144..576878 /locus_tag="RTM1035_02715" CDS 576144..576878 /locus_tag="RTM1035_02715" /note="COG3698 Predicted periplasmic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02715" /db_xref="CDD:33494" /translation="MLVAVFGSGAGQAAECRAERFEGESYTVCAVDMVRDDLRLFLNS AESGTPLGSFGAIEGKLKAEGKTLVFAMNAGMYHADRSPVGLYVEAGQEMRGLVTRDG PGNFGLLPNGVFCIRDGRADVIETLRFARERPHCRDASQSGPMLVIDGALHPRFLVES DSRYIRNGVGTSEDGRRAWFVISDRAVNFHTFGRFFRDHLRVRQALYFDGKVSRLFAP GLGRSDIGFPLGPMVGAVIDADAAVD" gene 576915..577820 /gene="truB" /locus_tag="RTM1035_02720" CDS 576915..577820 /gene="truB" /locus_tag="RTM1035_02720" /EC_number="5.4.99.-" /note="COG0130 Pseudouridine synthase" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B" /protein_id="jcventer:1101493006646_RTM1035_02720" /db_xref="CDD:30022" /translation="MARKRKGREISGWLVVDKPAGMTSTAVVNKVKWALQAQKAGHAG TLDPEATGVLAVALGEATKTVPYITDALKAYTFCVRLGQATNTDDTEGEVIAESDRRP TDEDIKALLGSFVGDVMQVPPKYSAVKIDGQRAYKLAREGEEFEVAARPLWVEELLLV DRPDADHAVLEMTCGKGGYVRSVARDLGEKLGCFGHVAWLRRVWSGPFEAEDGLSIED IDKLAHTPELEAHVRPLEEGLADVPMVAATPEGAARLRNGNPGMVIAQGIEYGDECWA AIDGKAVAVGRYKAGELHPSRVFNQ" gene 577817..578392 /locus_tag="RTM1035_02725" CDS 577817..578392 /locus_tag="RTM1035_02725" /note="COG4333 Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="jcventer:1101493006646_RTM1035_02725" /db_xref="CDD:34055" /translation="MSGTAPDHLHDPGGKVRLRLPDGVVGGAEYSACGRYRQVLSRDW TADGVAPRRVLFVGMNPSVASAEVSDPTCHREVMFAKDWGYSFYFKGNMLDWRATSPK DLPRDPNEACSEANIPALVAMAEQCEVVVLAFGKLHARYQGVVRQALCEIAATGKPLM CLGLNKDGSAKHPLYLRKDTRLRPFPMPVVG" gene complement(578393..579025)