LOCUS       RTM1035         4212272 bp    DNA     linear   CON 26-JUL-2006
DEFINITION  Roseovarius sp. TM1035.
ACCESSION   
VERSION
KEYWORDS    .
SOURCE      Roseovarius sp. TM1035
  ORGANISM  Roseovarius sp. TM1035
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
            Rhodobacteraceae; Roseovarius.
REFERENCE   1  (bases 1 to 4212272)
  AUTHORS   Belas,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K.,
            Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2006) J Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
FEATURES             Location/Qualifiers
     source          1..4212272
                     /organism="Roseovarius sp. TM1035"
                     /mol_type="genomic DNA"
                     /strain="TM1035"
                     /db_xref="taxon:391613"
     gene            <1..706
                     /locus_tag="RTM1035_00005"
     CDS             <1..706
                     /locus_tag="RTM1035_00005"
                     /note="COG1651 Protein-disulfide isomerase"
                     /codon_start=2
                     /transl_table=11
                     /product="DSBA oxidoreductase"
                     /protein_id="jcventer:1101493006644_RTM1035_00005"
                     /db_xref="CDD:48572"
                     /translation="DDRGAVGHFTEGKTNMNRRGLVLSVLAVGAAGFGGAAWYATRPQ
                     PIAEAVPVAPEVNDVLIRPYSPILGPETAPVTIVEFFDPACEACRAFYPVVKDIMTEH
                     GDAVRVVIRYTAFHGDASVEAIRVLEAARMQHVFEPVLEAVLREQPRWASHGTPAPGL
                     ILEIAASGGLDVEAARTQMLAPGVVAVLNQDRADVEAVGVRQTPTFFVNAKPLDPFGE
                     AELRRLVAAEVAASQS"
     gene            735..1202
                     /locus_tag="RTM1035_00010"
     CDS             735..1202
                     /locus_tag="RTM1035_00010"
                     /note="COG2847 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00010"
                     /db_xref="CDD:32675"
                     /translation="MTKLSYINGLTLVLLLSGMSTPAFAGSEDVVVENAWSRASIGVN
                     RPGAAYMTVRNTGEDTVTLTGLTTPLAVMPQIHETKTNADGVSSMAPADEITIEPGQS
                     VALEPGGLHAMLMKLQNPMIEGETFPLTLTFSDGGEVTVEVPILGIAARGPES"
     gene            1340..1828
                     /locus_tag="RTM1035_00015"
     CDS             1340..1828
                     /locus_tag="RTM1035_00015"
                     /note="COG1999 Uncharacterized protein SCO1/SenC/PrrC,
                     involved in biogenesis of respiratory and photosynthetic
                     systems"
                     /codon_start=1
                     /transl_table=11
                     /product="SCO1/2 family protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00015"
                     /db_xref="CDD:48517"
                     /translation="MDFRLTDHEGNEVGPEALIGRPTMVFFGFTYCPDVCPTTLSDIS
                     GWLEDLGDDAARMNVVFITVDPERDTAEAMAEYVGYFHPAIRGWTGPEDQISRAVEAF
                     RASYERVPTEGGDYTMNHTASVFLFDAKGELVTMIDYHEPREFAVPKIRRALTEDVEG
                     AT"
     gene            1825..3198
                     /locus_tag="RTM1035_00020"
     CDS             1825..3198
                     /locus_tag="RTM1035_00020"
                     /note="COG0739 Membrane proteins related to
                     metalloendopeptidases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00020"
                     /db_xref="CDD:31082"
                     /translation="MNIRIVLASAVVAGAFSVTAIAISGVLSKEPVPPAIAEATLWTP
                     DPLSMPQIADYDVTTPAAFHADNASPMRPLPLLQSVFAETALPEIEPPLITWSREIAS
                     GETLDAVLANAGIAAPARAEIALALGAEYDLRRLRPGHEITVISKVDGNPSRVELAVD
                     DGVRIETVFGQELVTRVLEPDPEMVTFAGEAVIESSVFAALDKAGIPARFAVDMAQML
                     GGTVDFRRELSGGETMRLLWREARDGNERIGQPELAFAALNLGETVYEIVWPDDGSGK
                     ATIYVDGEVLRVFAQPVEGARLSSVFGRRTHPVYGNVRMHTGVDFAAASGTPVKATAP
                     GRVSFIGRRGGYGRVVEIAHGSDTLTRYAHLSEVPDTLEQGQRVMAGDMIGRVGATGT
                     ATGPNLHYEVLVDGRPTDPLSDDRLAEAAERDADDTAALERLAEARTLLAERLTSEFM
                     QTTTERL"
     gene            3202..3660
                     /locus_tag="RTM1035_00025"
     CDS             3202..3660
                     /locus_tag="RTM1035_00025"
                     /note="COG3019 Predicted metal-binding protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00025"
                     /db_xref="CDD:32836"
                     /translation="MKRLALALAVTLALFPAAQAVADAIQIDVRKTNGCGCCLSWMKH
                     LEESGFAPTGEDMFGGSLVRFKLDNGVPQRMVSCHTALVDGYVIEGHVPASDIQRLLD
                     ERPDAVGLAVPGMPYGSPGMGPEDDREAYEVFLIRGDGSTEIFSSYSAAD"
     gene            3683..4468
                     /locus_tag="RTM1035_00030"
     CDS             3683..4468
                     /locus_tag="RTM1035_00030"
                     /note="COG0428 Predicted divalent heavy-metal cations
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00030"
                     /db_xref="CDD:30777"
                     /translation="MEPFSPITLGFLGSLAAGSLTAVGAIPVLFGRIPSRATRDLLLG
                     FAAGVMLAASFFSLIIPALDAAEGQFDNGALPAAIVCVAILLGMGAVALMNEWLPHEH
                     FKTGREGPDAASLRRVWLFIIAITIHNFPEGLAVGVGFGADGLSGGLPLAIGIGLQNA
                     PEGLAVAVSLLGEGYSRRRAWGIAALTGLVEPVGGLLGAGIISISQPLLPWGLAFAAG
                     AMLYVISHEIIPETHRSGHQNRATLGLAAGLVIMLFLDVWLGG"
     gene            4449..4943
                     /locus_tag="RTM1035_00035"
     CDS             4449..4943
                     /locus_tag="RTM1035_00035"
                     /note="COG0597 Lipoprotein signal peptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein signal peptidase"
                     /protein_id="jcventer:1101493006644_RTM1035_00035"
                     /db_xref="CDD:30942"
                     /translation="MYGWEDEMKLTHFQGFIAAGTAFLVDQVTKAIVVANAADLSAGI
                     PVFPGFNLIYLRNDGVTFGLLGGAPWWSLTALALAVCGWLTVMLVRTANPVEAIAYGA
                     IIGGALGNVLDRIRFRSVTDFLDFYVGSTHWPAFNMADVFVVSGVGLLLIAPWLSAKL
                     KTGT"
     gene            5147..6511
                     /gene="lnt"
                     /locus_tag="RTM1035_00040"
     CDS             5147..6511
                     /gene="lnt"
                     /locus_tag="RTM1035_00040"
                     /EC_number="2.3.1.-"
                     /note="COG0815 Apolipoprotein N-acyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="jcventer:1101493006644_RTM1035_00040"
                     /db_xref="CDD:31157"
                     /translation="MGQFGFGVSWIAESFYVDSERFGALAIPAVAGLSAGLAIFPAIA
                     AMLFATIMQRRAVGDTTAGLLLATCWVAAEWLRGHVLTGFPWNLAAYALVEHAALRQP
                     AAWVGSYGLSFLTVFIGLLPGVLIVAAPNRRVPVLVLFAVVVMGLWGGGALRLGTNVP
                     PTDSALRIVQGNVPQVEKWAPGSRERTLEKYLGLSAQPGRFDLLLWPETAFPGFLDED
                     ALARRRLSTVLPDGRILLTGVPDRVEGDGGTRYFNTVQAYDGSGEILTGYAKHHLVPF
                     GEYVPLRGWLPIERLTEGLGDFTPGPGPRTLAIPGAPLVAVAICYEIIFPGQVVDDLF
                     RPDWIFNATNDAWFGTSIGPEQHLASARMRAVEEGLPVVRAANTGISAIIDAKGEIIA
                     RLETGQTGVIDASLPTALAPTPYARFGDWTSLALICAVWALAFTVGLVRRRFNSEKSK
                     SEES"
     gene            6511..6678
                     /locus_tag="RTM1035_00045"
     CDS             6511..6678
                     /locus_tag="RTM1035_00045"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00045"
                     /translation="MLVLAGFVGGALWGGYLAQRRKGNRLDILQYATSFGIAFGLLAF
                     FASVILLRITS"
     gene            6703..8640
                     /locus_tag="RTM1035_00050"
     CDS             6703..8640
                     /locus_tag="RTM1035_00050"
                     /note="COG2366 Protein related to penicillin acylase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative penicillin acylase (penicillin
                     amidase)"
                     /protein_id="jcventer:1101493006644_RTM1035_00050"
                     /db_xref="CDD:41830"
                     /translation="MKRLFNILLYLLLAVFALGLTVSGVVYFLLRASVPDYDEDFSVA
                     GIEGPVDILRDAAAIPHISADSAPDAYFALGFVHAQDRLGQLLRARRAAQALMPLDRT
                     IEVEPSTAQALDAYAAGVNAWLGLVSEGGRGRGSPDLLIADERMIAAWRPVDSLRLAQ
                     AFLNDLQPERRQNDLSGLSDLPIPSDRPLLPELFVTSPKVSLDAWALPGDRTATGAPI
                     LAADIRGPLSLPSEWYLADIQLPTGAAIGATLPGVPFIVVGRSERVAWAFRSVSQKAV
                     KEPENPTAAQASNFLMMLDRLARSADVNDAMDACMNLSPAGLEILAIDRETLARWPDR
                     EVETPLSFRDARLAALDERQPIFSVEGAITVQRDTVSAAARALLPIMAKELWFVGSTG
                     ALEENRADELRGDILDQLAQWNGDMDRFSPEPLVFWAWARALQKRILQDEFPSATKVW
                     ARPNPDVLFAVLSDRGGSAIWCDIRPSTRIETCQDQVRAALDDAIGWLVDRYGPDPSA
                     WAWGEAHALNMGWAPIRSSGIISDLLSLEAPSSGDPDTLIATLFTSDNDRPFATSAGT
                     NFQAVMSFSEEAGSYFIAPAGQSGHPLSRFYENLFPMWMQGKYLPMSTDLSLAQGGAV
                     GTSRLSPVSVDGPAIQHDRSQ"
     gene            9003..9629
                     /locus_tag="RTM1035_00055"
     CDS             9003..9629
                     /locus_tag="RTM1035_00055"
                     /note="COG3336 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00055"
                     /db_xref="CDD:33145"
                     /translation="MGLLAHPVTATAALITSLFIWQIPVLYGLAQRIAAIEVFAHFAM
                     VLAGIWYFGMLFDPRDPPEGARRGARLISGFAVIVSNIFLGSLTTLKEVSLYASYQTA
                     GTGLLDPLSDETMGGYTIWVPSSMLMIAAIILVMNGWNAAEVRRWNSRYELVRGSNSA
                     ALEFPETAEELRLKVAKPNRDMGRTLAIGALVMFFIVMTTVVTIVYAL"
     gene            complement(9867..10337)
                     /locus_tag="RTM1035_00060"
     CDS             complement(9867..10337)
                     /locus_tag="RTM1035_00060"
                     /note="COG1321 Mn-dependent transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator of mntH"
                     /protein_id="jcventer:1101493006644_RTM1035_00060"
                     /db_xref="CDD:31512"
                     /translation="MTKLQSQEHEPFETVDRAPEAQAEGFATVRQAHESEMAEDYVEL
                     IAELIESRGEARPVEIAERFGVKPPTVTKNISRLKAAGLVRREPYRAIFLTDAGRELA
                     EACRRRHRIVVAFLLSLGIDEETAERDAEGIEHHVSTTTLEAFEHALLQSESGK"
     gene            10432..12312
                     /locus_tag="RTM1035_00065"
     CDS             10432..12312
                     /locus_tag="RTM1035_00065"
                     /note="COG1858 Cytochrome c peroxidase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00065"
                     /db_xref="CDD:32043"
                     /translation="MIQKFLGAFIVALASALVLSGPVAATPAKEAPWLPEAAAYRLTL
                     FLGNLEPLPWDDVGTAWAEPYRGSEFSVGALAWLDGNSDIGPAPLLDAITREDRQAVF
                     AEATRLIARRIDEELDRAVMADDPARAQQAVRTARELYRSFADGIAAADPDASRRIGL
                     AWLELNSSTGSAGVLGAGATPASRKTMEAAREVISLYLAENYLVDDFAPRRTLSALPE
                     TVVLSGRTIEVPPSLPPGSDIFDQDPLPRLVLNFEEQGIDETDLPLVAYGDMLFDSAQ
                     IFGNPAQGLGVACSTCHNRSDVNQRLFIPGASHQPGAIDVDGAFFNPIFNDRRDDPID
                     IPSLRGLRFTGPYGRDGRFASLRDFTRNVIVNEFGGDEPTPFMLDALLAYMLEFDFLP
                     NSMLTPDGQLTEAAPEAAQRGEAIFNTPFAALGDRSCSSCHVPDTNFLDRQAHDIGSV
                     ALAYDGARTGAMDTPTLLGTVYTAPYFHDGSLPTLAAVVDWFDESKALGLTGAERADL
                     TAYLETVGAADEPYEAFDAENTAFRLAFSELTTFASTLDTLLPQRDAKHILLLTDTVA
                     ADLSADASTMSNLAARPEVYALAQRLAEVGDAVRTDDWVAAETSWTAFKSEADAIEER
                     AF"
     gene            12312..13187
                     /locus_tag="RTM1035_00070"
     CDS             12312..13187
                     /locus_tag="RTM1035_00070"
                     /note="COG3221 ABC-type phosphate/phosphonate transport
                     system, periplasmic component"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transport phosphonate binding
                     component"
                     /protein_id="jcventer:1101493006644_RTM1035_00070"
                     /db_xref="CDD:33034"
                     /translation="MAIHMNRRTMLALAAAGAVSLATPLAAQDTALRLAFIPQENPEK
                     LLGDIEAITGWLASEIDVPVEGFVTIDHAAAVEALRNGDADISFMGALPFVLAEAEIG
                     AVPLLSEVYRDAPSYTGRIFVRRDSGIAGLADLRGRDIAFADPISESGYLYPLAEFVE
                     AGLIDGPGAAEAFFGRVFFAGGYQQAMQAMAEGLVDAAGASQYADLLLTPQQQAQVTW
                     IAESPPIPSHVVIARPGLDAEVQDRFTNAMLQLNEPENRDKLRYLYGPDGYVRADSAA
                     YGGVRDMARRYGLLE"
     gene            13184..13966
                     /locus_tag="RTM1035_00075"
     CDS             13184..13966
                     /locus_tag="RTM1035_00075"
                     /note="COG3638 ABC-type phosphate/phosphonate transport
                     system, ATPase component"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC phosphate/phosphonate transport system
                     ATPase"
                     /protein_id="jcventer:1101493006644_RTM1035_00075"
                     /db_xref="CDD:48289"
                     /translation="MNIAIRIDDLNFAHPGGSVPALERVSLTISTGESVALLGPSGAG
                     KTTLLALLDGRLQGWRGRVSVLGAPLDPDQPPPRASRPDTGFVFQEFALVERSTVLRN
                     VLNGRLGRMAPLRALLGSPTPHDLDIARTALTDCGIADLAERRVDSLSGGQRQRVAIA
                     RCLAQEPRLILADEPVSNLDPTRAGEVLALLTGAAQARGATALFSSHQPDLARRFAQR
                     IIGMRDGRIAFDVPTSELNDDATAELYREVEPIPGIGLRAVS"
     gene            13966..14724
                     /locus_tag="RTM1035_00080"
     CDS             13966..14724
                     /locus_tag="RTM1035_00080"
                     /note="COG3639 ABC-type phosphate/phosphonate transport
                     system, permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="PhnE, subunit of alkylphosphonate ABC
                     transporter"
                     /protein_id="jcventer:1101493006644_RTM1035_00080"
                     /db_xref="CDD:33437"
                     /translation="MAFRGFGGFATSGLIAAAIVWSFATTDVELSRLMSAGPRIADFL
                     GRMVPPDPTVMAEIRKGSAETLRIAILGTLGAVILSVPLGILASETMVSRAVFRPIRT
                     LLAFIRAIPLILVAMLMVGAVGLGPLPGIIAVAFHATGMLAKFYAEAIDGVPRAPIAA
                     LESAGAGPLVRLRHAIWPQMAPVVARDTIFRFELNLRESLILGIVGAGGIGFYIQTYV
                     RSFQYDKAASVTIAVVVMVIAIEAINVTLRRRFT"
     gene            complement(14728..15204)
                     /locus_tag="RTM1035_00085"
     CDS             complement(14728..15204)
                     /locus_tag="RTM1035_00085"
                     /note="COG3034 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="ErfK/YbiS/YcfS/YnhG"
                     /protein_id="jcventer:1101493006644_RTM1035_00085"
                     /db_xref="CDD:32849"
                     /translation="MGGFAAFLSGCASKFRSYNGPEVTRLRMYKGQRLLVLDGADDVL
                     RTYPIGLGFAPEGHKQFEGDGRTPEGSYEIDRRNPDSLFHLSIGISYPNEADIAFAEA
                     QGKSPGGDIFVHGGPRKGIDPMNVRDWTAGCIAVTDRQIEEIYAMVRDGTPIDIYA"
     gene            complement(15304..17472)
                     /locus_tag="RTM1035_00090"
     CDS             complement(15304..17472)
                     /locus_tag="RTM1035_00090"
                     /note="COG2217 Cation transport ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="Cation transport ATPase"
                     /protein_id="jcventer:1101493006644_RTM1035_00090"
                     /db_xref="CDD:32399"
                     /translation="MVGPKVGGTEHLAFDVINGRMTILDTAVGISDNEVSQLVASTGM
                     STKPWDADNAAEDQAAHLARQKRFTSLSGGFWAAGFLFHIVETGMGGALGLFAGHGEV
                     PMPMAEAGIFAVAILFGVWLVAPKAWSSARRLSPDMNLLMVVAVAGAIGLGEFFEAAT
                     VAFFFSLSLYLESWSVGRARNAVSSLLDLAPPTARVLYDDGSEADVPAAAVAVNARFI
                     VRGGDRIPLDGEVVDGAGAVDQAPITGESALVPKEPGDEVYAGTINGEGTLTVRATKA
                     ASDTVLAKIIRMVGDAHARRAPVEQWVAKFARIYTPIVMALAIAIALVPPLLLGGAWD
                     YWFYNALVLLVIACPCALVISTPVSIVAALTASARAGVLIKGGAYVEAPGRTTALAMD
                     KTGTITMGEPEVAAVHPLVGVSARDLMALAASLEARSSHPLARAILSRAEADGVSVSA
                     AEDTRTVPGRGLEGRADGRAIWLGSDRFAEEKGFGNAIPADLRDRIEGAGSTLVAVGD
                     ETGVTGVLELRDRIRPDAKGIVARLHAQGVKTIVMLTGDNERTARAVAAEVGIDEVRA
                     DLLPEDKVTAIEELVATHDMVAMIGDGVNDAPAMARAHYAIAMGAVGSDAAIETADIA
                     LMTDDLARVPWLIAHSRRTMTIIHQNIGISLATKALFVGLTAFGMASMWGAIAADVGV
                     SLLVVANALRLLNGHRIKDGPSGGEPVGEQMAKGALAHGH"
     gene            17870..18139
                     /locus_tag="RTM1035_00095"
     CDS             17870..18139
                     /locus_tag="RTM1035_00095"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00095"
                     /translation="MLQKYAVIMVATLALAGCAVPSKEDNDPFRIGNVPESVAALAAP
                     DQDLITARLRPEDNCYWYAHSGPVETTLVPLRSAGGNPICVARQS"
     gene            complement(18179..18844)
                     /locus_tag="RTM1035_00100"
     CDS             complement(18179..18844)
                     /locus_tag="RTM1035_00100"
                     /note="COG1376 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="Twin-arginine translocation pathway signal"
                     /protein_id="jcventer:1101493006644_RTM1035_00100"
                     /db_xref="CDD:31566"
                     /translation="MLTRRHFIQTTAALFSASISSPLLADTWPTEAEKAAWDAQITPP
                     GYNPATSNPWGLHPRFLPQRVITKDGLVAGDIHVDAVARYLYHIEEGGTAMRYGVAIA
                     RGKLYEPGVYTIKRKVRWPHWQPTQNMIDRDPELYADIADGMEPGPENALGSRALYLY
                     VGDRDTYLRIHGTPQPRSIGGRASSGCVRMVMAHINDLYPNVEIGSTAFLYSAEDSVT
                     PQS"
     gene            complement(19280..19630)
                     /locus_tag="RTM1035_00105"
     CDS             complement(19280..19630)
                     /locus_tag="RTM1035_00105"
                     /note="COG0640 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator, ArsR family protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00105"
                     /db_xref="CDD:47725"
                     /translation="MMQVFADRNAAAAGIERRAKLFRGLADPSRLAILGVLCEGPLVV
                     HEIVKRTGLSQPNVSNHLRCLLDCGLVASDRDGRFIRYRISSPRIAALLNDVDALLDV
                     VAEGVGACDNYREA"
     gene            19753..20541
                     /locus_tag="RTM1035_00110"
     CDS             19753..20541
                     /locus_tag="RTM1035_00110"
                     /note="COG2217 Cation transport ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00110"
                     /db_xref="CDD:31423"
                     /translation="MDCAKDAAQIERAAQSAGVAPDAVKVSAATHIMTLKVPEASLPE
                     IEKAVETTGYGFDRIESDEDLQQSAAHQDPGYRRALWIVVILNVGYGVLEMIGGFIAG
                     SQAVKADALDFIGDGAITFLGLLAIGWSLLWRARSALIQGIFLGLLGLGVFSTTIIRA
                     FEPTTPDATLMGILGLIALVINVISVLPLLRYRKGDANMRAVWLFSRNDAIGNAAVVI
                     AAGLVVWLGSAWPDLIVAFGIAGLFLHSSWAIIRDARADLKAVA"
     gene            20493..21047
                     /locus_tag="RTM1035_00115"
     CDS             20493..21047
                     /locus_tag="RTM1035_00115"
                     /note="COG0597 Lipoprotein signal peptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="Peptidase A8, signal peptidase II"
                     /protein_id="jcventer:1101493006644_RTM1035_00115"
                     /db_xref="CDD:30942"
                     /translation="MGDHPRRAGRSEGGGMNSRVLGGLCAIAAFGVDQGTKALALNSP
                     ALENGVEVLPFLNLVRVLNDGVSFGMLGGVVPWWGLVALAAVVVAWLLIWLWKAPDGL
                     TGAALGLIIGGALGNILDRLRYQAVPDFLDFHYGSYHWPSFNLADVAIFCGAALLFWD
                     SFRTSKVRPENREQDNRKGDVTGG"
     gene            21094..21606
                     /locus_tag="RTM1035_00120"
     CDS             21094..21606
                     /locus_tag="RTM1035_00120"
                     /note="COG4665 TRAP-type mannitol/chloroaromatic compound
                     transport system, small permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical permease protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00120"
                     /db_xref="CDD:34283"
                     /translation="MDWIDRGIRGIGVVTAWLTVVSIAAYGALQMLDRKLQLGVSSYL
                     PDLSTSLLFILIFLTFGYTYLRDGHVRVDVLRRHWSARRIAWIELIGGLFVLLPLAAI
                     LTYYGWDGLMRTTKYAETQLWAQRIAGVIGPILLALAGMIVALRNIAFLTGRRAQGAP
                     EQASGLHNGE"
     gene            21599..22858
                     /locus_tag="RTM1035_00125"
     CDS             21599..22858
                     /locus_tag="RTM1035_00125"
                     /note="COG4664 TRAP-type mannitol/chloroaromatic compound
                     transport system, large permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative C4-dicarboxylate transporter family
                     protein, DctM subunit"
                     /protein_id="jcventer:1101493006644_RTM1035_00125"
                     /db_xref="CDD:34282"
                     /translation="MNEVLTVAMLVVMAIGVFSGFPVALVLAGTGFLGFVAAVWVGIT
                     DFQHLGLIYLRARGVLTNESVQFTSVPMLIFLGLILNASGIAETMFRLLGRLLTGVPG
                     RYAIATLLIGLVLAPAAGVIGASVITVALVAYAPMMASGYAPRTAGGAVAASGALGVV
                     FPPAVMLFFISNVFYLRIGLMYVALIVPVLLMVMAFAVYFAVTLRKTVEIPLDTPKTN
                     LVSDLLFVLASVAVIASIPLSIILGFATLTEAAGVGVFGALLVALARKRLSFSSLNSV
                     TVQTSTMTSMVYFIVLGASVFSLSFHLVGGPDVIFEWISAFDLTRWELLAILLGVIII
                     LGFVFDWIEVLLVFVPVLMPIFSELDFADHVGSAYFAQIWIAGLIALALQTSFLTPPF
                     GYALFFAKMAAPNRLLKKSALDAVMRT"
     gene            22896..24074
                     /locus_tag="RTM1035_00130"
     CDS             22896..24074
                     /locus_tag="RTM1035_00130"
                     /note="COG3666 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase, IS4"
                     /protein_id="jcventer:1101493006644_RTM1035_00130"
                     /db_xref="CDD:33464"
                     /translation="MRGTDEASGSLFSYVDLEQRVPDRHPLRLIRRVVNDALASLDAE
                     FAALYTDFGRPSIAPERLIRASLLQLLFSIRSERQLMEQMNYNLLFRWFVGLGIDDPV
                     WVPTVFTKNRDRLLTTDMSRKLMAAILAHPEVRPLLSDEHFSVDGTLVKAWASMKSFQ
                     PRNSAPPPHDDDPGGPPPPADATFANTEPQPQQTETQPMPDTPRHIRNAAVNFRGQKR
                     SNATHISVTDPDARLYKKAPGAAATLCFMGHTLMENRNGLIVQADLTHADGYGERKAA
                     LEMINRHSPGSTRRLTLGADKGYDSANFVAALRRMVVTPHVAQKARSSAIDGRTTQHP
                     GYALSQRRRKKIEEPFGWAKTVGGMAQTVHRGLDRVRAQFTMTMAACNLARLPKLLAP
                     "
     gene            24294..24851
                     /locus_tag="RTM1035_00135"
     CDS             24294..24851
                     /locus_tag="RTM1035_00135"
                     /note="COG3547 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase, ISlxx2"
                     /protein_id="jcventer:1101493006644_RTM1035_00135"
                     /db_xref="CDD:42350"
                     /translation="MQLIRTLAAWRPDLTGFRDVEESYKIALKSLARRYLELHDEVAD
                     LDDMIEAIVTDLARYLIACSGIGFTSAAQLLLTAGDNPERLRSEASFAALCGVSSVPA
                     SSGKTTRHRLNRSGDRAANSALHIIAIGRLRLDSKTKEYVARRIAQGHSKLEAIRCLK
                     RYIAREVFNIIARRHKQINQAQIAA"
     gene            24904..25164
                     /locus_tag="RTM1035_00140"
     CDS             24904..25164
                     /locus_tag="RTM1035_00140"
                     /note="COG2801 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transposase protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00140"
                     /db_xref="CDD:40748"
                     /translation="MLAAREIKISMDGKGAWRDNVFVERLWRTIKYEEVHLRAYASVS
                     EARAGIGRYLAFYNSRRPNSSLDGKTPDQAYFNQPMPEAVAA"
     gene            25317..25523
                     /locus_tag="RTM1035_00145"
     CDS             25317..25523
                     /locus_tag="RTM1035_00145"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="jcventer:1101493006644_RTM1035_00145"
                     /translation="MRSLLYEAATVILTRSLADSDLRTWGLKLKGRIGFKRAAVVVAR
                     KLAVIMHAMLRDDTPFVRVAKAAT"
     gene            26269..26463
                     /locus_tag="RTM1035_00150"
     CDS             26269..26463
                     /locus_tag="RTM1035_00150"
                     /note="COG5659 FOG: Transposase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00150"
                     /translation="MACEMTEKLLGEGAPSAFVLTHVVYSSDYGFPHMLEDRGQPYAL
                     AVRSTHNLHFLEERRWYRQT"
     gene            26959..27459
                     /locus_tag="RTM1035_00155"
     CDS             26959..27459
                     /locus_tag="RTM1035_00155"
                     /note="COG4665 TRAP-type mannitol/chloroaromatic compound
                     transport system, small permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="Tripartite ATP-independent periplasmic
                     transporter, DctQ component"
                     /protein_id="jcventer:1101493006644_RTM1035_00155"
                     /db_xref="CDD:34283"
                     /translation="MIIRAIDGLNETVGRIVSVVAIVFAAFIIYDVFMRYVLNDPTRW
                     AFDVTKQMFGFYFVLLGGYALRHQAHVRVDLLTANLSETPARIVDALGYLIFFFPFAW
                     VFTTRSYEFAMRSYAQGETTYGSVQLPVYPLKMAMAAAAALLLLQGIAEVLKLVFNRQ
                     EVRSDA"
     gene            27476..28771
                     /locus_tag="RTM1035_00160"
     CDS             27476..28771
                     /locus_tag="RTM1035_00160"
                     /note="COG4664 TRAP-type mannitol/chloroaromatic compound
                     transport system, large permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP dicarboxylate transporter, DctM subunit"
                     /protein_id="jcventer:1101493006644_RTM1035_00160"
                     /db_xref="CDD:34282"
                     /translation="MFGLLLLGLFMGHPLAFVLGGTAVLGALIAGKPMVLGIVINRIF
                     GDVLDNFTLIAIPLFVLMARFLSDSGVTDRMFESLRLMMSNVRGGLALAVVFISILLA
                     ATTGIIGASITVMGVMALRPMLQYGYSPTLTTGVIAASGCLGILIPPSIMLILMASYS
                     PLSVGELFAGAMIPGILLGLLYAVWVVIVAFVRPDMAPAVESDEKVSRSALLKMLAIE
                     AVPPLVLILGILGSLLAGIATATEASAIGAMLALLIVIFRGKFRWISFYGAMLETGRT
                     SAMILFIVIGATAFTGVFNITGGLRATQEIIRGMDMEPWMLITMMLFIVFILGAFLDW
                     TGIVLLSFPIFLPIVQEMDVSLLWFVVLMSVVLQTSFLTPPFGYALFYLRAIAPKSVK
                     TSQIIIGVLPFIGLILIMCLGVAIFPQLVTWLPETLYTK"
     gene            28787..29878
                     /locus_tag="RTM1035_00165"
     CDS             28787..29878
                     /locus_tag="RTM1035_00165"
                     /note="COG4663 TRAP-type mannitol/chloroaromatic compound
                     transport system, periplasmic component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical extracellular
                     solute-binding protein,family 7"
                     /protein_id="jcventer:1101493006644_RTM1035_00165"
                     /db_xref="CDD:34281"
                     /translation="MLTKITLVTGLALAAGIATQSAAQESWTMTTTWPSSLELIEIDK
                     HFVDLANKLTGDALTIEFFEGGALVPAGEVFGAVESGTIQAGGDWPGYWAGRDSAFSP
                     LATTASLFNAIDYVNWIEQWGGADLYNEIYGKFGMVYLPYGVTNNESGFRTNEPIVTL
                     EDLQGKRLRLSGLEQGRLLEKLGGNQVSMAGGEIYQSLERGVIDGAEFSTPNVDYSGG
                     FHQVTKFWATPGWHQSASVFGVMINKASWDALSPETQEDLKIAAQANLIWSLSFTEKR
                     ATEAYQQFKDAGIEITRYDDETLARVQELANEVIIETACENPASAKVYLSQLEYLADY
                     AKWRDASAPFNLGRSPNGPDIEAIRACAN"
     gene            complement(30115..33201)
                     /locus_tag="RTM1035_00170"
     CDS             complement(30115..33201)
                     /locus_tag="RTM1035_00170"
                     /note="COG0841 Cation/multidrug efflux pump"
                     /codon_start=1
                     /transl_table=11
                     /product="acriflavin resistance protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00170"
                     /db_xref="CDD:31183"
                     /translation="MAFSISGASIQRPVAVWLLILFCLLGGYWGLNTVGRLEDPSFTL
                     KTALVFVPYPGATAVEVEEEVSDVIENALQQMKQLDRVESKSMPGMAQITVEIEGTYG
                     PDEIPQVWDEMRLRISDVQDDLPQGARAPIVNDDFGDVYGMFYAVKTEGLSPREERDL
                     ATRLRLGLVTVDGVAKVEVQGLTEETITLSIPSARLTELGLPPNQVLGVLNDENLVFN
                     NGEITEGPARIGLSVPPGYVTPEGIEQLRLGAAGEVGQVAIRDIARVSRDEAEQPSQV
                     IRHNGTAAFTLGVSALTNRNVVEVGSAVAARLETLKADLPDSVEITPIYEQHVVVDEA
                     VSSFLLSLAMSVAIVVGALMITMGWRAGLVVGTTLGLTVFVTLFFMSVFGIAMERISL
                     GALIIAMGMLVDNAIVITEGMVIGMARGKSAIKAAAETESSTSIPLLGATVIGIMAFS
                     GIGLSPDSTGEFLFSLFAVITISLLMSWILAVTVTPYLGMLLLKAPKKNTSDDPYKGA
                     FYAIYRGLLWLVLRARVLVVLVIVGITIVSVMAFGQVKQAFFPASNTPLFYVEFQMPQ
                     GTDINVTDREMKRLEQLILSEDKVTDVTTLVGRGASRFMLTYNPEQADASYGQLIVRV
                     ADAEAIPAMANRLNRDLPAEFPNALVRVEELVFGPPSGADVAVRFSGPDPVVLRQLAD
                     DALRIYEAAGTITNPRTNWRQREILVEPIVDESRMRLAGATRSAIADTVRYGTSGLRV
                     GELREGDEVIPIHLRLPATERDGVDRVRDLSAWSDGAGTYVPMANLVERFEPRLVEAL
                     IHRRNRERTITALGGARADLTADEAFKSVRAEIEALPRPDGYSMEWGGQYESSTDAQT
                     SLGKQLPLGFLVMLTISILMFNKVRQPLILWLVVPMSVTGMVLGLLFTGLPFTFTALL
                     GFLSLSGMLMKNAIVLVEEIDVQRAEGVADYKAVIDGSVSRLRPVVLAAGTTIFGMIP
                     LLPDAFFASMAVTIMGGLAFASVLTLVAVPVLYALLFRIRPPKEESTDSKTGTASG"
     gene            complement(33234..34367)
                     /locus_tag="RTM1035_00175"
     CDS             complement(33234..34367)
                     /locus_tag="RTM1035_00175"
                     /note="COG0845 Membrane-fusion protein"
                     /codon_start=1
                     /transl_table=11
                     /product="RND efflux system membrane fusion protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00175"
                     /db_xref="CDD:31186"
                     /translation="MKQSWKRIASVTVIAAAALLVLSVFPALRTDVRAQTTTDATKPA
                     AETSEGAEHDRKVTVEVTRATSRTVTRGRTVAGRVAPARTVDIAFQVSGQVLRLEVDP
                     GDKISEGDLIAELDPVDFELAVDRARAAFDLAKSELERAKSLAERGVAAEARFETARA
                     EYAQAEVALREAERRLSQTQIIAPFDAIVARTFIEEYVNVTSAAPVARLQDVSEMRIM
                     ISLPEELAAVARSAPDAFDLVASFPAVPGYTAPLMLRSFATDADRTAQTYDVEFAITG
                     DVDSRLLPGMTARVRLSNAAAESSAQSAMVPVSAIDTSSRTEPSVWIYDEESGQVRRR
                     TVRLGLPVDNEIVVLEGLQGDELVVSGGWWRLRDNQTVTVAGL"
     gene            complement(34369..34911)
                     /locus_tag="RTM1035_00180"
     CDS             complement(34369..34911)
                     /locus_tag="RTM1035_00180"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="jcventer:1101493006644_RTM1035_00180"
                     /db_xref="CDD:31500"
                     /translation="MTPAETRSASRRILSAARAIAARAGAGKITIDAVAKEAGLSKGG
                     VLYNYPTKKALLSGLLDAMLAEHRELLDSVPERHPARTLRGHLETVLQSQEVDDDLSM
                     AILATAASDPQLLDPLRGELSDDIGRILSDTQDPQGAMVVFWAIQGVRFQKLLKLPDG
                     GADLRGRVIERLRTLIDELE"
     gene            complement(35065..35709)
                     /locus_tag="RTM1035_00185"
     CDS             complement(35065..35709)
                     /locus_tag="RTM1035_00185"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator, TetR family protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00185"
                     /db_xref="CDD:40531"
                     /translation="MLRCAIVITFWKQVITMRESKGADVLRGAREVFLKCGFEGASVD
                     AIAEQAKVSKATLYAHFSSKDRLFLSVLRAECDRLSEEICRPLSNLGNAQDALEELSR
                     RMIGLVMDEGYIRLLRVCIGAVPVLPEAGEIYMDAGPTRAITHVAQILKDLHETKSLN
                     VENVQNAASQFIHLSISDVIMPRLLAVDQPVDASEHSKRAVDAFLAVYGRRNDL"
     gene            complement(35855..36178)
                     /locus_tag="RTM1035_00190"
     CDS             complement(35855..36178)
                     /locus_tag="RTM1035_00190"
                     /note="COG1733 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator, HxlR family protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00190"
                     /db_xref="CDD:31919"
                     /translation="MDAILRLLMGPWTTYIIWVLNDQGPQRFGVLKRSVPGISTRMLT
                     ERLRMLQGAGVIWREQAETIPPAVTYGLTPRGNDLRSVLDALGTIAERWKAEGVFQDD
                     DLGAV"
     gene            36334..37146
                     /locus_tag="RTM1035_00195"
     CDS             36334..37146
                     /locus_tag="RTM1035_00195"
                     /note="COG3384 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="Extradiol ring-cleavage dioxygenase, class III
                     enzyme, subunit B"
                     /protein_id="jcventer:1101493006644_RTM1035_00195"
                     /db_xref="CDD:33191"
                     /translation="MARQPTLFIPHGGGPCFFMDWTPPDEWDRHRQFLENLPGTLPER
                     PRALLVISGHWEEPAFTVQTSPTPPLLFDYGGFPPHTYELTWPAPGDPALADRVHDLI
                     RAAGLAAAKDAARGFDHGVFVPLKVAFPEADIPCVQLSVASDLDPARHIALGQALAPL
                     RDDGVLILGSGNTYHNMGVLMQSLRGGPRGPVVGGAFDAWLTEVMTCPDPEERNRRLV
                     HWSDAPGGRDAHPREEHLIPLHIVVGAAGNDIGRKTLEDHVLGAVESAFRFG"
     gene            37175..38068
                     /locus_tag="RTM1035_00200"
     CDS             37175..38068
                     /locus_tag="RTM1035_00200"
                     /note="COG0702 Predicted nucleoside-diphosphate-sugar
                     epimerases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00200"
                     /db_xref="CDD:31046"
                     /translation="MSDSIQGPFIVTGASGQLGRQVVENLLAKGANPVVAITRTPDKL
                     ADLRARGVEVRAGDFNDPATLGAAFAGGGRLLIISTDDLEPGKRLAAHRNAIAAAQEA
                     GVTHIVYTSLTNPDESSPITFAADHRESEALIKQTGLPHTILRNCLYADLLLMSGAQA
                     IGAGALYAAAGDGKAGYVTRADCARAAAAALLSEIGSTLRDITGPEAVGHAEIAAILS
                     QVAGKEIPYVPITRDALVEAMVTNGLPEFMANVFSSFDVAIAKGNLDMASDDVEKLTG
                     LRPQSVRDFLLANTPALTGQA"
     gene            38092..38580
                     /locus_tag="RTM1035_00205"
     CDS             38092..38580
                     /locus_tag="RTM1035_00205"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00205"
                     /translation="MLNIPPREGPRPVTTPCAPHTQISQNPDAASYRAFKDRAFDFPF
                     VIRQPSMISVPGAEALCLEHGRGCGCREAFMIGTEFAHVHPPQDGSLHMMLPEDAVPK
                     IVDLGWAEPHPMAAAGMIPPTAVMVYAPRNEPEIDSVLGLLGLSYDFARGRLGRVDNI
                     VL"
     gene            38714..39757
                     /locus_tag="RTM1035_00210"
     CDS             38714..39757
                     /locus_tag="RTM1035_00210"
                     /note="COG0845 Membrane-fusion protein"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00210"
                     /db_xref="CDD:31754"
                     /translation="MAAIVIAVAVSGFLIWQSTLSDTDAEGFARGNGRIEAVEIDVAA
                     KLPGRIDTVLVNEGGLVTAGAPLATLDTRQLQANRNQMVAELRRAEIAVENATLLVEQ
                     RAAEVRAAEALLEQRRAEEDVARRQYERSESLTQNSITSERQFEIDRANAFGAAAAVA
                     SAQASLAAARAGVASAKASVIGAEAAVTAAQATIEAIDVQIEDSTLKAPRAGRVQYIV
                     ARAGEIVGAGGRVVNMLDLNDVYMTFFLSTADAGRIGLGTEVRLLLDAAPGIVIPASV
                     SFVSDVAQFTPKTVETEVEREKLMFRVRARIAPELLQKHLDQVKTGLPGVAWVRLDPT
                     APWPAEAQGKVLE"
     gene            39754..42495
                     /locus_tag="RTM1035_00215"
     CDS             39754..42495
                     /locus_tag="RTM1035_00215"
                     /note="COG1131 ABC-type multidrug transport system, ATPase
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="export ABC transporter ATP-binding protein /
                     export ABC transporter permease protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00215"
                     /db_xref="CDD:31320"
                     /translation="MTDSMPAVRAEGLSLRYGNTLAVDDVSIDLPSGRSVGVIGPDGV
                     GKSSLLALIVGARRMQTGRLEVLGGDMARAGHRARIAPRIAYMPQGLGRNLYPTLSVR
                     ENVDFFGRLFGEGAQERAQRIDELLKATGLAPFADRAAAKLSGGMKQKLGLCCALVHD
                     PDLLVLDEPTTGVDPLSRREFWALIDRIRADRPHMSLLVSSAYMEEAARFDHLVAMDA
                     GKVLATGSTAEILERTGAADLDAAFIALLPEENRSRHKDLSIPPRDPASDGENVIEAE
                     NLTVRFGDFTAVDQVSFRIKRGEIFGFLGSNGCGKTTTMKALTGLLDPSDGTTKIYGR
                     KVDAHDMATRKRIGYMTQSFSLYSELTVRQNLDLHGQLFDMTSAEIVPRIAELAERFD
                     LEDVLDSLPMRLPLGIRQRLSLAVALIHRPEILILDEPTSGVDPVARDIFWQSLIDLS
                     RNDGVTIFISTHYMAEATRCDRISLMHQGRVLVSDTPEAIREEVGAETLDDAFVHHLQ
                     RAQDQDTPPAPEMKEELSAGPATSARRRRGGFSLARLLSFSWRESLELRRDPIRLTLA
                     SLGSVILMIVLGYGVSMDVENLKFAALDFDRSILSQSYVNDLAGSRYFDEEPPLVDHA
                     DLDYRMRAGEISLALEIPPGFAADLERGRPVAIGAWFDGAMPMRADTVRGYIQGMHAH
                     WLTEQMRQVFGDQAVAGNFTLEVRYRYNPDVESLAAMVPAMIPLLLMLIPATLAVLSV
                     AREKETGSIVNLYVTPARRLEFLLGKQVPYVVLGFMNYLLLLALAVVVFGVPVKGSLL
                     ALSLGALIYVVLATGLGLLISAFTQSQVTALFFTFMATLIPAMQYGGIIDPVASMDGM
                     GRVIGEIYPTSHFVTISRGTFSKALGFDDLGGSFLPMLALVPVVVLLGAIFVRKQEK"
     gene            42499..43611
                     /locus_tag="RTM1035_00220"
     CDS             42499..43611
                     /locus_tag="RTM1035_00220"
                     /note="COG0842 ABC-type multidrug transport system,
                     permease component"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter, family 2"
                     /protein_id="jcventer:1101493006644_RTM1035_00220"
                     /db_xref="CDD:31184"
                     /translation="MRLRHVLQLSLKEIRGLLRDPLLMVLVAYAFTLDVYVSATAIPE
                     SLNSATIGIVDEDASPLSRRVADAFLPPYFMPPAQIDIAQMDARMDAGIDTFSLVIPP
                     EFQRDLLAGNRPELQLNVDATRVSQAFTGAGSISAIVNQEIAGWLARDAAPVGMPVDL
                     AVRARFNPSLDPAWFGAVTSVISTVTMLSIILSGAALIRERDHGTLEHLLVMPVTAAE
                     IMTSKVLSMGSVVLVATALSLTLVVQAGMGIPIGGSVALYLVGAALHLFATTSMGILL
                     ATIAGSMPQFAMLLLLVLLPLDILSGGVTPRESMPQAVQYIMLAAPNTHFIALAQGVL
                     FRGAGLSVVWPQLVALMLIGSVMFAFALHRFRAFLR"
     gene            44208..45443
                     /locus_tag="RTM1035_00225"
     CDS             44208..45443
                     /locus_tag="RTM1035_00225"
                     /note="COG3464 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="jcventer:1101493006644_RTM1035_00225"
                     /db_xref="CDD:33267"
                     /translation="MGLGVSDDTVLRQLKKCVQGTAEASTVIGIDDWSWRKSQTYGTI
                     IVDLERRVVIDILEDRDVATCANWLKRHPEVEVISRDRCGLYAQAARLGAPQAKQVAD
                     RFHIVQNLRQAIEEQMNLHGRATGRALLSDADNITAAGSLLKSRLAHRTSREEVFATI
                     HALRNQGLSCSEIGRRTGFPRRSIAKWLQFETPPDRRRAALKRTSPWYFEEFLGQSWK
                     DGIRTGSALFRLIRERGYEGSQTHLQRLLAGWRRAEQQASGPKVKHKILKPVRDPETG
                     HAISPVIAAALCIKPRGKLTSDQARKVDALKAGSPDFATMRRLAMRFNGILRGREADP
                     LPAWIDEAIETDLAPLVRFARTLNRDFDAVKNAIEMPWSNGQAEGQINRLKTLKRAMY
                     GRAGPELLRARMLPFRHTD"
     gene            complement(45463..46134)
                     /locus_tag="RTM1035_00230"
     CDS             complement(45463..46134)
                     /locus_tag="RTM1035_00230"
                     /codon_start=1
                     /transl_table=11
                     /product="BNR repeat, putative"
                     /protein_id="jcventer:1101493006644_RTM1035_00230"
                     /translation="MTDRAAPVGIGAREPSLATLPDGRIILSWTEEKGAEAKVRMAIL
                     DGSEWSDARTIHKSSKIYINWADFPSVMALSNGTLAVQWLELNGTSDYQYDVNIAFSL
                     DEGKSWSVPLIPHDDRSQRQHGFVSLVPHQFGGLTALWLDGRKYESQTEGDSFENAMQ
                     LRSRQINSDGTMKPESLLDARACTCCQTSAARTGSGDMVAVYRHRTADEIRDISIVRS
                     TGGVA"
     gene            complement(46324..46782)
                     /locus_tag="RTM1035_00235"
     CDS             complement(46324..46782)
                     /locus_tag="RTM1035_00235"
                     /note="COG2010 Cytochrome c, mono- and diheme variants"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c family protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00235"
                     /translation="MKEFDGMKWAAIFFALIAVASAGWYIMQPDYSQTGTQTDEGVAL
                     PAGALVTVTLPASFTEQEQIGAGAYDAVCAVCHGLNGQGRDGVAPPLVHKIYEPSHHS
                     DMAFVLAAQNGVRAHHWKFGNMPAVEGVTRSEILAIVTYIRALQRANGIN"
     gene            complement(46779..48083)
                     /locus_tag="RTM1035_00240"
     CDS             complement(46779..48083)
                     /locus_tag="RTM1035_00240"
                     /note="COG0559 Branched-chain amino acid ABC-type
                     transport system, permease components"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter, permease protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00240"
                     /db_xref="CDD:31327"
                     /translation="MSLLDRYHVFVHNVSAAFGYDYNDATPDWVHPFIHLILVLAPAL
                     LISVGLYLAIRGVLKLWKDRSMPAFHAEPIRGLEGSLFSTVLRYSRRQQALMIMVSLI
                     AMPILYLTLELPKQIVNNALDSDRFPIAVLGRDLDQVVFLMLLCGLYLLAIILNGLNK
                     YGLNVFKGYVAERFLRRFRLLVYRQWRSDADSRNQSEIIPILAQEVEPIGGFAADVLA
                     LPILQGGTLLTILSFMFVQDPVLGAAALTVLPIQLVLLPKLQRRVNALSRTRIREVRQ
                     LGRQLSDQLRERQVNPAGLLPVSTSFRELERVRRKIFRLKFFIKALNNFLTALTPFLF
                     YSLGGYFVIEGRITLGALVAVLAAHKDFSAPLKELFNYYQTLEDTRIRYQEIMAFLSK
                     SIQPLGHAQPDNTVPQEAGQFERSKQRYPALSLVGQGAIATS"
     gene            complement(48092..48625)
                     /locus_tag="RTM1035_00245"
     CDS             complement(48092..48625)
                     /locus_tag="RTM1035_00245"
                     /note="COG4454 Uncharacterized copper-binding protein"
                     /codon_start=1
                     /transl_table=11
                     /product="copper tolerance protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00245"
                     /db_xref="CDD:34133"
                     /translation="MTNFLRTCTIALALVLPAFSVGASSGKGQQPHARAFEVPGHDPI
                     GKPGDGSSIDTTIELSIRETESGYMLFEPDALHIESGSVIRFLISNLGGLDHEFFLGS
                     FNEVAEHQQWMREHPDMQHDNANSVSIPSGQNAELIWEFSDMTNLEFVCLIPGHREAG
                     MWGVIIVHDHLAPKSKG"
     gene            complement(48730..49443)
                     /locus_tag="RTM1035_00250"
     CDS             complement(48730..49443)
                     /locus_tag="RTM1035_00250"
                     /note="COG4454 Uncharacterized copper-binding protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00250"
                     /db_xref="CDD:34133"
                     /translation="MQKILLSTAITLTLATGAYASPGHTSKAETAAPQMDIGVPGDAA
                     KVDRTIDVTLLENDEGQMLIESEPMNIKEGETIRFNITNKGELEHEFVLDTVERNAEH
                     KIEMAKMDMEHDDPNRIRLDAGASGEVVWTFANSGTFEAACLIPGHYESGMHREVAVG
                     DQMAQADVEYTSGTIKKIDAKAGKVTIIHGPLVNLDMPAMTMVFRADEAMMAKMAEGQ
                     GIEFVADRVKGKLTVTQMK"
     gene            complement(49490..50764)
                     /locus_tag="RTM1035_00255"
     CDS             complement(49490..50764)
                     /locus_tag="RTM1035_00255"
                     /note="COG2132 Putative multicopper oxidases"
                     /codon_start=1
                     /transl_table=11
                     /product="putative copper-containing oxidoreductase
                     protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00255"
                     /db_xref="CDD:32315"
                     /translation="MGLPEAAQMDSAATAITARPNSGPDYTPVVTLNGWTLPHRMNNG
                     VKEFHLVAEPVERELADGMIAHLWGYNGQSTGPTIEAVEGDRVRIYVTNKLPEGTTVH
                     WHGLILPSGMDGVSGLSHPSIPPGKTFVYEFDLVKSGTFMYHPHGDEMTQMAMGMMGM
                     FVVHPKDPTFMPVDRDFLIMLNAFDIDPGTYVPRIMTMTDFNLWTWNSRIFPDIDPLV
                     VNKGDLVRVRVGNLTMTNHPIHMHGYDFKVTCTDGGWVPPEAQWPEVSIDIPVGAMRA
                     YEFVADHLGDWAIHCHKSHHTMNAMGHDVPTFIGVNKKPLTQKIRQFQPEYMPMGMSG
                     MGDMAKMEMPLPDNTIPMMTGWGPYGPIEMGGMFSVVKVRDGIDADDYSDPGWYENPP
                     GEMAYEWTGELPDFASNNSPKTILTPKPTSKG"
     gene            complement(50860..52323)
                     /locus_tag="RTM1035_00260"
     CDS             complement(50860..52323)
                     /locus_tag="RTM1035_00260"
                     /note="COG5283 Phage-related tail protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical conserved membrane protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00260"
                     /db_xref="CDD:31727"
                     /translation="MRVSKFPLVFGFPLILGACATAVPGIYTEPKAGFANISSQVTPA
                     IGKRTAFAETQAENEALKKQVHAMVHRKTISADTAVQVALLNNKGLQASYANVGLSAA
                     EAWQQSTPENPIVAIGILGIGAPELGAYRAIEGLIRSNVLDATTRKQRTAIADANFRK
                     AQLSAVNDTLALANQTRKAWVDAVAAFEAVSYLRRAKATSDAGSELAMRLGETGALNT
                     AGQAREQAFNAELAGQLAQARLNATRSKEQLTRLMGLWGTEVDYYVPDALPALPRSVG
                     RVTDIEAKALRNRVDLRVAKLGLEAQAKAFGLTDQTRIISDLEFIAGFEAEREIEDGE
                     TETVTTPQVEVEFAIPIYDTGKARMRKAELSYLQAANVLAERAVNVRSEARGAEASYH
                     AAYKIARHYRDVLVPLRTTVEEEGLLSYNGMITNTFELLTDVREKLGASLEAANAKRE
                     FYMAQADLTAAIYGGGEGGGGAGGEGATLAAGGGAGH"
     gene            complement(52323..52598)
                     /locus_tag="RTM1035_00265"
     CDS             complement(52323..52598)
                     /locus_tag="RTM1035_00265"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00265"
                     /translation="MSLAQILRETMFINQVTFMKIHLLMGASALGLGACAYEPTPLPS
                     VATQQAVINTAVSSPISYQDPLAGYTYRGPTGPRDWRSVNQEQTEGN"
     gene            complement(52618..53040)
                     /locus_tag="RTM1035_00270"
     CDS             complement(52618..53040)
                     /locus_tag="RTM1035_00270"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00270"
                     /translation="MSFRVVISSWIKAFTCIAFALALVFSPPSAAHAASGMHDGHQAK
                     SVSIVGAAETHDTGSDAHHAHTKLKVTSDIDIAASDKDGKEKQSQECCNGICISVVFI
                     EDTKIRAEPVGTSEYVILDGQTYSVETAGFLRPPRFLI"
     gene            complement(53220..53378)
                     /locus_tag="RTM1035_00275"
     CDS             complement(53220..53378)
                     /locus_tag="RTM1035_00275"
                     /note="COG2608 Copper chaperone"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00275"
                     /translation="MQKPIMAADPDAKVSCDLTAPIVGVDSTLDETALAAAISGAGYG
                     AEKLAEVR"
     gene            53738..54355
                     /locus_tag="RTM1035_00280"
     CDS             53738..54355
                     /locus_tag="RTM1035_00280"
                     /note="COG0477 Permeases of the major facilitator
                     superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00280"
                     /translation="MPGIQFVSIVLAFSLAALLPVLCLYILLSPGFAAALAAGGPSLA
                     RFLRQVTTNGLPVVFAVNYVSFFLFAVIQKPKVARRDTAFFVLVDILLRAILFPSLHA
                     LIYVLSADWFESFGGSRATALSVVAPTLARSAFFENISGVYLYATMISALPLYVSAFG
                     QSEFLGPTVRRLPIKAGLMLLALFAFALSVGLIAIGAQGIAYLQG"
     gene            complement(54367..55710)
                     /locus_tag="RTM1035_00285"
     CDS             complement(54367..55710)
                     /locus_tag="RTM1035_00285"
                     /note="COG0531 Amino acid transporters"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="jcventer:1101493006644_RTM1035_00285"
                     /db_xref="CDD:30877"
                     /translation="MQKHNKNHDGNDGYREGSISLGGAVAMGTGVMIGAGIFALTGQI
                     AQLAGPLFPLAFIAGAIVTSFSAYSYIKMSNAWPSAGGIAMILQKCYGSGAVAAGAAL
                     LMALSMVIAESLVARTFATYVLRPFDITGGPLVPVLAVAVIVFAFLVNIAGNRSVGLF
                     SLIMAAIKIGGIALFGIAALWSSGFQFAAASETAETFGVTGFIASVALAILAFKGFTT
                     ITNSGGEITDPHRNVGRTIMLSIAICVVVYLLVAFGVGASLTIDEIIAARDYSLAQAA
                     EPALGQVGFYLTVVLAAVATASGVLASVFAVSRMLTMLTEMKMIPHSHFGMSGAVQRH
                     MLVYTVVIASTLAVLFDLGRIASLGAFFYLVMDMIIHWGVFRYRRTEVGASSIVLLSA
                     LSLDAIVLAAFTVMKLQSDPMIVLYAAVGMIAVFAFERVYLSRWLAPQAAHSHGE"
     gene            complement(55819..56475)
                     /locus_tag="RTM1035_00290"
     CDS             complement(55819..56475)
                     /locus_tag="RTM1035_00290"
                     /note="COG2717 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00290"
                     /db_xref="CDD:32610"
                     /translation="MLTGYLLLASRAEWSEMHRYNRALGDLSLLLIVAAMAIGPLARL
                     SSAPFLRKLMPYRRELGIYAVLAATVHTIIILIGWVELDFARLFGFEFHPQLQRYVML
                     QHGFALANVVGIAALLYGFVLAGTSNNFSQRVLGTSVWKYIQQGAYVLWWLAVLHTAY
                     FLFFHFLDFHRQMPEPNWARWPFVALVASVIALQGAAVVVTWRSQTSRRIYGAPSQRE
                     "
     gene            complement(56609..57262)
                     /locus_tag="RTM1035_00295"
     CDS             complement(56609..57262)
                     /locus_tag="RTM1035_00295"
                     /note="COG2020 Putative protein-S-isoprenylcysteine
                     methyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00295"
                     /db_xref="CDD:32203"
                     /translation="MTDAGASYGLWLLVFINSGVFIIFAFSFFKPQTKRDWRSFGAFS
                     AFVVALFTEMYGFPLTIFFLSGWLQSTWPEVDWFAHDSGHLPEMMFGWQSNPHFGPFH
                     LLSFVFIGGGFWLISVAWHHLWNAQRQGLLATTGPYARIRHPQYVGFVLIMLGFLVQW
                     PTLLTLAMFPVLVWMYARLARGEEKDSRERFGAGWDRYASRVPAFIPNVNTLQNVER"
     gene            57301..57453
                     /locus_tag="RTM1035_00300"
     CDS             57301..57453
                     /locus_tag="RTM1035_00300"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00300"
                     /translation="MTAVHEEVHSDAKQQWQPDQQSAAQDVHPVVVTQEKDANCQRND
                     QIDAGA"
     gene            complement(57547..59901)
                     /locus_tag="RTM1035_00305"
     CDS             complement(57547..59901)
                     /locus_tag="RTM1035_00305"
                     /note="COG2217 Cation transport ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="jcventer:1101493006644_RTM1035_00305"
                     /db_xref="CDD:32399"
                     /translation="MNDQVSHAAHETESNIYVCPMHPEVRQNGPGDCPKCGMHLVPEA
                     ELDNHAGHDHHGHDHHAGAAPADGRYDTVPEGYDGAVYTCPMHPQVRQVEHGSCPICG
                     MGLELESGVPMDDGPNPELVDFTRRFWVGTVLTIPLLILTMGPYLGFPGVREIFGERA
                     TLWIELVFGTPVVLWCGWPFLVRGWNSFRTMNLNMFSLIGMGVIAAWLFSVVAVLAPG
                     IFPDGFRDAEGHVGVYFEAAAVIVTLVLLGQVMELRAREGTGKAIRALLDMAAKTARV
                     IRDDGSEEEIPLEDVQVGDRLRVRPGDKVPVDGVVLDGRSSVDESMISGEPVPVEKTE
                     GDPLTGATINGTGSLVMEATRVGSDTMLAQIVEMVSNAQRSRAPIQKYADKVAGYFVP
                     AVIGIAVLSFIAWAVWGPSPALSYALISAVAVLIIACPCALGLATPMSIMTATGRGAQ
                     AGVLIKNAEALERFEKVDTLIVDKTGTLTMGKPQLVAVLPQPGHDEAEVLRLAASLER
                     GSEHPLAEAIVRGAEERDVKMADADDFEAVTGKGVKGVVGGKVVALGNLAMIRDLGLE
                     AGDLTAKANARRDEGETVMFVVLDGEIAGLVAVADPVKETTPAAIKDLHALGFRVIMA
                     TGDNERTAKAIGARLGIDEIRADVLPEDKARIIKELQQQGRKVAMAGDGVNDAPALAQ
                     ADVGIAMGTGADVAIESAGITLVKGNLDGIVRARRLARATMRNIRQNLFFALIYNASG
                     VPVAAGVLFPFFGILISPMFAAFAMSASSISVVLNSLRLRGAKI"
     gene            complement(59898..60845)
                     /locus_tag="RTM1035_00310"
     CDS             complement(59898..60845)
                     /locus_tag="RTM1035_00310"
                     /EC_number="2.7.6.1"
                     /note="COG0462 Phosphoribosylpyrophosphate synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylpyrophosphate synthetase"
                     /protein_id="jcventer:1101493006644_RTM1035_00310"
                     /db_xref="CDD:30810"
                     /translation="MILVAFPEMRPLAEDLAPALGADLLALDWHHFPDGESLISLPGD
                     LDGADVAFLATLRDPDRLALPLRFAAATAREMGARRVGLIAPYLGYMRQDRRFERGQA
                     VSAPLFAQFLGESFDWLASVDPHLHRIARLQDVFPMPAIRAVSAPLLATWISTNLPDA
                     VLLGPDSESQQWVAEVARLAGRPYEVLRKVRSGDRSVDVSVPESAALHEGTPVILDDI
                     ASSGVTMARAVERLLAAGTAAPVCLAIHAVFAHGAQDAILSAGAARIITTDTIPHPTN
                     AIGIAGLLAEAILSVVTALDLPVAGTIRLDPNPAERTTE"
     gene            complement(60842..62350)
                     /locus_tag="RTM1035_00315"
     CDS             complement(60842..62350)
                     /locus_tag="RTM1035_00315"
                     /EC_number="2.4.2.4"
                     /note="COG0213 Thymidine phosphorylase"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="jcventer:1101493006644_RTM1035_00315"
                     /db_xref="CDD:30562"
                     /translation="MTETLALVSSRIDTYRQPVVYMHEDCHVCRSEGFAAQTRIRIDL
                     KDRWIIATLNVVRRGAWLAVDQAALSVSAWAALGAEIGDEAAFSHPEPPASASMIRAK
                     AYGERLDRAGFATIVRDTLDSRLSDLDLAAFVTACAGDRLNEAETVALTRAMKEAGQT
                     LDWGQHTVLDKHCVGGLPGNRTTPIVVAIVAAAGHLIPKTSSRAITSPAGTADTMEVM
                     APVALDAAALRRVVEAEGGCLVWGGGLALSPADDHFIRVERPLDFDSTGQLVASVLSK
                     KAAAGATHVLIDMPVGPTAKVRSAGAAEALGIRLSSVGKALGLNLALHISDGVAPVGR
                     GMGPALEAHDVLAVLRRAPDAPGDLRARALDLAGHLLDLAPHAVAGRGRDRAQALLDS
                     GAAEAKFMAICAAQGGFRKPGTAAQQIEIRAPHAGQLTAIDNRRIARIAKLAGAPRQK
                     SAGIRLLVRIGDWVDKGQPLYELHAETPGELAYALAYAESQTGVLTLSEAVS"
     gene            complement(62347..63729)
                     /locus_tag="RTM1035_00320"
     CDS             complement(62347..63729)
                     /locus_tag="RTM1035_00320"
                     /note="COG1236 Predicted exonuclease of the beta-lactamase
                     fold involved in RNA processing"
                     /codon_start=1
                     /transl_table=11
                     /product="metallo-beta-lactamase family protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00320"
                     /db_xref="CDD:31429"
                     /translation="MIPTARPKLRFLGAAGTVTGSRYLVEALGRRILVDCGLFQGFKQ
                     LRARNRKPFPVRVNTIDTVLLTHAHLDHSGYLPTLIRAGFRGRVLCTEATADLCGLIL
                     PDSGHIQEEEARFAARRGYSKHKKPKPLYTLKDAKAALDRFDLQPFDRRIDLGDGIAA
                     RFIPAGHLLGAAQIRLEVGGRVVHFSGDLGHDPDPLMRPPQPFGGADVLVCESTYGNR
                     SHPDVDPEAELAPILKRTFARGGTVLIPSFAVGRAQGLMLHIARLMERGDIPYVPVFL
                     NSPMAVNATEIYHRHHAEHHVSREDCIAMFEIAKRVNTVEQSKELNTRQGPMIIVSAS
                     GMLTGGRILHHLASFGGDRRNAILLSGFQAGGTRGAALAGGARTLRMFGREFPIEAEV
                     VQLQSFSGHADADEILRWMSAGPAPEMTYLTHGEPVTADTLRFRVEHELGRSVRVPEH
                     LESVYLDRPR"
     gene            complement(63726..64091)
                     /locus_tag="RTM1035_00325"
     CDS             complement(63726..64091)
                     /locus_tag="RTM1035_00325"
                     /note="COG1263 Phosphotransferase system IIC components,
                     glucose/maltose/N-acetylglucosamine-specific"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00325"
                     /translation="MMPIFYFTAVAVILFLALRMTCGACVMGGPAGAGRVRLPVVPLG
                     WALSLFLALTYLVCIAFDLIFPAYAMYETWSGLLPGFVWLTPVGFIIGLVESFLYGWY
                     AALIFGGLYNAIAARGTAT"
     gene            complement(64558..65025)
                     /locus_tag="RTM1035_00330"
     CDS             complement(64558..65025)
                     /locus_tag="RTM1035_00330"
                     /note="COG1502
                     Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi
                     n synthases and related enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthetase"
                     /protein_id="jcventer:1101493006644_RTM1035_00330"
                     /db_xref="CDD:31691"
                     /translation="MAQTCVYLTSPYFGPGTVVDRALQDAARRRVDVRLLVPRTSDPM
                     VAGWATRAAYAQLLSAGVRVYEYLPRPLHAKTSVVDTGWSIIGSANLDYRSLFVNQEL
                     VLVAHDRVLAGQLQAQYLQDLSDAREVPLRAWHSRSWRARGFEVIGWAARRLL"
     gene            complement(65184..65879)
                     /locus_tag="RTM1035_00335"
     CDS             complement(65184..65879)
                     /locus_tag="RTM1035_00335"
                     /note="COG0517 FOG: CBS domain"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00335"
                     /db_xref="CDD:33251"
                     /translation="MLAKDIMTTSVISVPLEGQIEDAVRLMLDHNISALPVVDAEGDL
                     KGLVSEGDLMRRVRETDGPRRSWWLEVLGGASESAQDFVKLKSHRVEDVMTRDVVSVE
                     EDTNVAEIARLLEKHRIKRVPVVRSDKVVGIVSRANLLHALSALQDGALPEPSEDDRV
                     LRAKIEEALKEVPGAAVNLINYTVDKGNVAVWGVADSDFEENAIRVAVENVPGVRMVE
                     VHMGRLPAWAYGI"
     gene            complement(65919..66521)
                     /locus_tag="RTM1035_00340"
     CDS             complement(65919..66521)
                     /locus_tag="RTM1035_00340"
                     /note="COG0723 Rieske Fe-S protein"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase, iron-sulfur
                     subunit"
                     /protein_id="jcventer:1101493006644_RTM1035_00340"
                     /db_xref="CDD:48646"
                     /translation="MMRQTIDETNQLPATERRDFLYYATASTGAIAAGAAVWPLINSM
                     NPSADVTASGTVKVDLSGVEPGQRITVKWQGHPVFVWRRSEAAIQAARAVDLDQLPDP
                     VDEAGENPNTSGEEPALDENRAAGEDGEWLVVIGVCTHLGCIPLGQDGSAVGEFGGWF
                     CPCHGSHYDTSGRIRKGPAPRNLDIPPYDLGDDLQLVIGT"
     gene            complement(66518..67360)
                     /locus_tag="RTM1035_00345"
     CDS             complement(66518..67360)
                     /locus_tag="RTM1035_00345"
                     /EC_number="1.3.1.10"
                     /note="COG0623 Enoyl-[acyl-carrier-protein] reductase
                     (NADH)"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-(acyl carrier protein) reductase"
                     /protein_id="jcventer:1101493006644_RTM1035_00345"
                     /db_xref="CDD:30968"
                     /translation="MPEFDACCDPAELLDLSGRKGLVVGIANDRSLAWPAALHFRQAG
                     AELAITYVDERTKPHVVPLAARLEAPILLPCDVNAPHELDAVFDAITDRWGKLDFILH
                     AVGSVPPGDLHGRLTDCSAAGFSQAMHVSVHSLIRMAHLAEPLMKSGGSLITLSYLGG
                     ERVVENYNVMGPVKAALEATVRYLAHELGPSNIRVNAISAGPVMTRAASGLTGFAGLL
                     DATARVAPLRRNVTADEVGRAALLFASDYTGGITGEVLHVDAGVHVESPVAAAKMNVK
                     SEES"
     gene            complement(67353..67532)
                     /locus_tag="RTM1035_00350"
     CDS             complement(67353..67532)
                     /locus_tag="RTM1035_00350"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00350"
                     /translation="MEWLFENWVLVLVFGGMAAMHLFGHGHGGHKHGKSAKRHGAHDK
                     KSEASADTEAVSEDA"
     gene            complement(67516..69222)
                     /locus_tag="RTM1035_00355"
     CDS             complement(67516..69222)
                     /locus_tag="RTM1035_00355"
                     /note="COG3243 Poly(3-hydroxyalkanoate) synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00355"
                     /db_xref="CDD:33055"
                     /translation="MPYVQDAFERWVLLLDTLRERADNMIAHERQGMPPLLDFDYELL
                     LDARTFERSANYALLRITRVGDDCWDDCVDEAKPPVIVIDPRAGHGPGIGGFKRDSEV
                     GMAMHEGHPVYFVIFYPEPMPGQTLSDVHYALRDFVLEVARRHPDTAPVLYGNCQAGW
                     AATLLAADCDGLTGPIVLNGSPLSYWSGEAASSPMRMMGALSGGAWAAHMISDLGDGR
                     FDGAWLAQNFETLQPEKAIWDKYATLFAHADTERERFVEFERWWNGYYTLSREEILGI
                     TQNLFIGNRLEQGEMQLDAHCTVDLKRISNPLIIFASDGDNITPPEQAMGWIGKLYPD
                     TDALKAAGQRIVYMTHPRVGHLGIFVSGSVARLQHRAILESLDDVEALSPGLYEMVID
                     NPSGDPDCETGDFEVRFEPREVDDLGIASDDAALKQVAQISRINEAVYSIFVSPWIRA
                     ATTPASAEALRALHPMRWTRTMFSEQVNPWMALIKSTAETLRETRSPLPDDHPAIVAE
                     RALSARTGEGIGAWRKGRDAWITHVFGAMFGNFPFAAATTQAEKPSASSKKGMNNYGM
                     AF"
     gene            complement(69299..69634)
                     /locus_tag="RTM1035_00360"
     CDS             complement(69299..69634)
                     /locus_tag="RTM1035_00360"
                     /note="COG0018 Arginyl-tRNA synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00360"
                     /translation="MPRKTMDRKSGGTRHSSSDDDDLRILFSQMTCACAETCGHADAP
                     MARALFNRVEMMNQPPSLAARALGIEPGDASYLLTGLREDVAKDFVRVMLAGRPSIDT
                     TNQEEADDE"
     gene            complement(69727..70353)
                     /locus_tag="RTM1035_00365"
     CDS             complement(69727..70353)
                     /locus_tag="RTM1035_00365"
                     /note="COG1595 DNA-directed RNA polymerase specialized
                     sigma subunit, sigma24 homolog"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor, ECF subfamily
                     protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00365"
                     /db_xref="CDD:31783"
                     /translation="MASQDSGKPDVPDASPERALLDGRGAFMGFLVKRLGNRADAEDV
                     LQDFCIRVLSRKDQLREVERMDAWLYTILRSTLNDHYRKGTRRSRLAAAAAREPEEWI
                     ADAPSQMARLCTCHGGLISELRPADAELIRRIDFGEEDRESVAADLRLNRNALGVRLH
                     RARTALREALTTHCGKCCQEDRDDCYCPPEGCENDKHETDCEEEGQEH"
     gene            complement(70574..71464)
                     /locus_tag="RTM1035_00370"
     CDS             complement(70574..71464)
                     /locus_tag="RTM1035_00370"
                     /note="COG0697 Permeases of the drug/metabolite
                     transporter (DMT) superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="Putative transporter, DMT superfamily protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00370"
                     /db_xref="CDD:40969"
                     /translation="MSPTVITKIVLAMFLWAACFPLITAGLQYAPHLTFATMRAGLAG
                     AALVGLAMILRRPFPRGWRTWLTLGIVGIGATSLGFLGMFHAAEFVSPGLATVIANAQ
                     PLLAAILGVVWLGERLPKVGWVGLSIGFMGILVIALPQLLDGGQEGSAIGFAYIVLAA
                     VGVTISNVAIKSIAGKVDGLFAMGLQLLIGSAPLAFAALALEDQNAIQWNAVFTASLL
                     GLALFGSALVYWLWFSVLEAVELNRAIVFSFLVPIFGLSIGALFFGERLSGIQFSGIA
                     LVILGIVFVNLKGARRSQGR"
     gene            71720..72388
                     /locus_tag="RTM1035_00375"
     CDS             71720..72388
                     /locus_tag="RTM1035_00375"
                     /note="COG1595 DNA-directed RNA polymerase specialized
                     sigma subunit, sigma24 homolog"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor, ECF subfamily
                     protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00375"
                     /db_xref="CDD:31783"
                     /translation="MNHDPNDRLSTADQPNTAAKDADIAVRRSLVEGRQHILNFLRRR
                     LGDPEAAEDVLQTFMLRAIDRSEQLRDVRAVRGWLGQILASSIADYGRKVSRRRQREV
                     VMAPTDLDSVQNGFDEELDEAICNCLYKLLPTLRPEYAEVIWRVDLQEQPRDAVAKDL
                     GITLNNITVRLHRGRQALKTRLEQMCLTCPVHGFLDCDCDAAEKARARFQAMKDDAGA
                     KTTD"
     gene            72721..73971
                     /locus_tag="RTM1035_00380"
     CDS             72721..73971
                     /locus_tag="RTM1035_00380"
                     /note="COG2230 Cyclopropane fatty acid synthase and
                     related methyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="Cyclopropane-fatty-acyl-phospholipid synthase"
                     /protein_id="jcventer:1101493006644_RTM1035_00380"
                     /db_xref="CDD:32411"
                     /translation="MWLLAKSLRRLVQNGRLTIYDPCGQTWHFGPGGEPAVSVRLTEK
                     VLPVQLLVNPSIALGEAYMDGTLRIETGSLRDLLSICMTDIDTIDALPGRRLTRWLDA
                     FLSRRLHHNPISRSHANVAHHYDISTELYDLFLDADRQYSCAYFPIGTETLDEAQAFK
                     KKHIAAKLLMRPGLEVLDIGSGWGGLAMELAQQHEARVTGLSLSTEQIAAARERAQQT
                     GLFDQVAFERRDYREEHGLYDRVVSVGMFEHVGRSGFDAFFTTLQRVLRPDGVALLHA
                     IGRMAPKGGSDPWIRKYVFPGGYLPTLSETIAAAERAGMWVTDVEVLRLHYAETLRHW
                     SERFAQERETARMLYDERFCRMWEFYLAVCEMAFRNGRLMVFQIQLAKRRDAVPLTRD
                     YIAKVKAGESAWDISTGTEFTRAG"
     gene            74013..75011
                     /locus_tag="RTM1035_00385"
     CDS             74013..75011
                     /locus_tag="RTM1035_00385"
                     /EC_number="1.2.1.59"
                     /note="COG0057 Glyceraldehyde-3-phosphate
                     dehydrogenase/erythrose-4-phosphate dehydrogenase"
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="jcventer:1101493006644_RTM1035_00385"
                     /db_xref="CDD:30406"
                     /translation="MIGKRVADAVVAQEDMDLVGVADVTSDWRARMARAKGFALYAAD
                     PDRTPAMREAGLDVAGGLDDLLATADIVVDSTPKKVAVRNVETYRERGIRFIVHGGEK
                     HEVTGHSFVAEANYASAIGRDRTRVVSCNTTSIVRTLTALKVAGLLGSARGTLLRRAT
                     DPWESHLGGIMNTLVPEPDIPSHQGPDAQSVDPDLDVITMAVKVPQTLAHLHYWSVRM
                     PRKASKDEVLEAFRASSRIALIRMADGLGALNAVKEMMADFGRPNDSLYEVALWEDML
                     KVEGDELYYAYMVDNQAIVIPETIDAIRALTEAERDGSASIARTNAALGVGTFTAT"
     gene            complement(75057..75827)
                     /locus_tag="RTM1035_00390"
     CDS             complement(75057..75827)
                     /locus_tag="RTM1035_00390"
                     /note="COG1028 Dehydrogenases with different specificities
                     (related to short-chain alcohol dehydrogenases)"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00390"
                     /db_xref="CDD:40206"
                     /translation="MKRLAEKVTLITGGAAGIGLETARLFLSEGAKVALVDLHVDDLS
                     DAAGDLGNPDDLLTIAADVSSVEDCKRYVAQTVEKFGRIDVFFNNAGVEGMVAPLVDQ
                     KIEDFDRVMAVNVRGAFLGLQHVLPVMTGQQSGSVINMSSIAGLKGSPNVAPYITSKH
                     AVVGLTRAAAIEVAGHNVRVNSVHPSPVNTRMMRSLEEGFNPGHGDEVKQQLAGTIPL
                     GRYGESIEIANLVLFLASDESAFITGAQYPIDGGMSAG"
     gene            complement(75846..76757)
                     /locus_tag="RTM1035_00395"
     CDS             complement(75846..76757)
                     /locus_tag="RTM1035_00395"
                     /EC_number="2.7.2.2"
                     /note="COG0549 Carbamate kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="jcventer:1101493006644_RTM1035_00395"
                     /db_xref="CDD:30895"
                     /translation="MLVVAALGGNALLRRGEPLTAKAQRENVATAATALAQIIKAGHR
                     LVVTHGNGPQIGLLALQGAAYKPDAVFPLDVLGAETDGMIGYMIEQALENALGHDRPV
                     ATLLTQIEVDPKDPAFAKPTKFIGPVYDKAEAERLAQARGWSIAADGAHWRRVVPSPM
                     PSGIPDLKVLELLLEQDVTLICAGGGGIPVVRRADGSLIGVEAVIDKDHATALLAHKL
                     NADALLLLTDVEAVFRDFGTETQSAIWQVSPEDAVRLDLPDGSMAPKVAAAATFVSDR
                     ARFASVGRLEDALALLDGKAGTMIVNN"
     gene            complement(76760..77761)
                     /locus_tag="RTM1035_00400"
     CDS             complement(76760..77761)
                     /locus_tag="RTM1035_00400"
                     /note="COG0078 Ornithine carbamoyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="jcventer:1101493006644_RTM1035_00400"
                     /db_xref="CDD:30427"
                     /translation="MSYNLRNRHFLALRDFTPQEISFLLKLSADLKAAKYAGTEVPRL
                     TGKEIALIFEKDSTRTRVGFEVAAHDQGAHVTYLGPSGSHLGKKETVKDTARVLGRVY
                     DAIEYRGFGHPIVETLAQYAGVPVYNGLTDEFHPTQILADFLTMQEHSDKPLREIAYC
                     FMGDAGNNMGDSLLIGGAKMGMDVRLCAPESLWPGQAIRDEADDVAVQTGARITITED
                     VDAAVKDVDFVYTDVWVSMGEPKEKWAERIELLTPYQVNSDVMAKTGNPRAKFMHCLP
                     AFHNAETEVGADIEEEFGITAMEVTEEVFESPASIVFDQAENRLHTIKAVLVATLGN"
     gene            complement(77785..79014)
                     /locus_tag="RTM1035_00405"
     CDS             complement(77785..79014)
                     /locus_tag="RTM1035_00405"
                     /EC_number="3.5.3.6"
                     /note="COG2235 Arginine deiminase"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="jcventer:1101493006644_RTM1035_00405"
                     /db_xref="CDD:32416"
                     /translation="MSEPKLGVHSEAGTLRQVIVSPPGLAHRRLTPDNRENLLFDDVF
                     WVKQAIKDHAVFADVMRGEGVEVLDAMALLGETLDISDARAWVLDHRITRNDVGVGMR
                     DDLRAWMEGLPGTELARLLVGGIRVDDLPFTPSGMFGSYLGPHGFVLPPLPNFIFTRD
                     NSAWVYGGVSLNPMHFAARRPETLLMAAVYRFYPTFADRVRVWFGDPTREFGTATLEG
                     GDIMPIGHGVVMVGMGERSTPQAVGQLAEALFEGGDVTRVIACQMPSSRAAMHLDTVF
                     THCGGDVVTTFKEVADAITCYDLRPGQGKAALDIRRDARHIFEITAEILGHKKLHLVP
                     TGGADAAEQSREQWNDGNNVLALRPGVVIGYDRNDDTNAALKEAGIEVLAIPGAELGR
                     GRGGSHCMSCPTIRDAI"
     gene            complement(79038..80444)
                     /locus_tag="RTM1035_00410"
     CDS             complement(79038..80444)
                     /locus_tag="RTM1035_00410"
                     /note="COG1288 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00410"
                     /db_xref="CDD:31479"
                     /translation="MAARFPTAYSILFGLIIVVAALTWIIPAGQYDRAMNEEVGREIA
                     VPGTYQTVEPNPQGVIDVMLAPVAGFYDPDSYAANAIDVALFVLLLGGFLGVVNATNA
                     IDTGIQTAMVRLKGREIWMIPILMSLFALGGTTYGMAEETLAFYALLIPVVIAAGYDS
                     VTGVAIILIGAGIGTLGSTINPFATVIASNAAGIPFTDGIALRLVLLLGGLAICVAYV
                     MRYASKVKADPARSVVAAQRDSDRQFFLNETDATFEEPKLSGTQKLVLILFFTTFAVM
                     IWGVSSQGWWMARMGALFFGMAIVVGLVARMGEKKLTSSFVDGAKDLLGVALVIGLAR
                     GIVVIMEQGLIADTILNSAADTLGGLPEVAFINLMLWIEIGMSFLVPSSSGLAVLSMP
                     ILAPLGDFAGVGRDLVVTAYQSASGLVNLITPTSAVVIGGLAIGRVSFDRWVVFVWPL
                     LLILVVFISAGISLAAIL"
     gene            complement(80503..82869)
                     /locus_tag="RTM1035_00415"
     CDS             complement(80503..82869)
                     /locus_tag="RTM1035_00415"
                     /note="COG2217 Cation transport ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="Copper-translocating P-type ATPase"
                     /protein_id="jcventer:1101493006644_RTM1035_00415"
                     /db_xref="CDD:32399"
                     /translation="MKKLTLEVRGLFEELDHLAVERHLSALGGVHSAEANPASASVTV
                     HYDETAVGEEELRNTVEACGFHCAGERVPNHVCHADHQMSGAEAPAGHDAMAHEMGHG
                     GGMDMASMVRDMRNRFWVALLFTIPIFTYSPMGGLFTPPAPPFGLELDLWLFFLGSAA
                     IIWPSWPFFVAAWRALRNGILNMAVLVVLSVGTGYVFSVGSTFFFPGVQFYEAVAVLL
                     VFILLGHWLEMRARAGASAAIRALLDLAPPMATVIRDGQDVEVPTSEVLEGEIVLIRP
                     GNKIPVDGEVVEGASLVDESMLTGESMPVNKAVGDTVIGATINKSGSFRYRATKVGAD
                     TALAQIVKLVQEAQNSKAPAQLLADKASQWLVLIAVVIGLATFAVWFWWIGSPLLFAL
                     TLTITVFVIACPDALGLATPMAVMVGTGLGAQHGILFKNAGALEDATKLDVIVFDKTG
                     TLTMGEPRVVEVVAAEGGAEDDALRAAAAVDRGSDHPLALAIVERAADLDVPQMAEFL
                     NLEGRGARAEVAGKTVLVGNRRLMDEEGIDVGTLTAEAERLKGEGRTVVHVAQGGRML
                     GLIAIADAPRPSAKATVAKLRARGVEVAMLTGDNEGTARRIAGELGIDIVLADVLPGQ
                     KAEKVKELQAQGKKVGMVGDGVNDAPALTQADVGFAIGAGTDVAMESADVVLMKSDPY
                     DVVGAIELSRATLRKMHQNLFWAVAYNVVAFPMAAGVFYPLIISPAVAALAMSGSSAL
                     VAVNALLLKRTRLEGIGAGKSGSASGGGQGDAQAGQVPLHAGHSQKSH"
     gene            83228..83737
                     /locus_tag="RTM1035_00420"
     CDS             83228..83737
                     /locus_tag="RTM1035_00420"
                     /note="COG2252 Permeases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00420"
                     /translation="MCLSAQVSFAASVFLVGGGTAISIVAWRRNKRYLPLALMPLFAG
                     LQQFTEGFVWVGMNGNDPLTVLWGAMGFIFFTWFMWPIWVPYSVYVLEPDDSPRKRLF
                     RLMALIGLAFGLLLYIPHGLNSSMVVVEINNQSLAYEKSMWLDYMMPRWLTNTIYVGS
                     DAGGGRIVR"
     gene            complement(83747..86617)
                     /locus_tag="RTM1035_00425"
     CDS             complement(83747..86617)
                     /locus_tag="RTM1035_00425"
                     /note="COG4644 Transposase and inactivated derivatives,
                     TnpA family"
                     /codon_start=1
                     /transl_table=11
                     /product="Transposase Tn3"
                     /protein_id="jcventer:1101493006644_RTM1035_00425"
                     /db_xref="CDD:41571"
                     /translation="MTDRQRAVLFDLPTDQAALLRHYTLADDDLEIIRGRRRSHNRFG
                     FALQLCALRYPGRLLAPGEVIPEAVTRFLAAQLGLRPDDLADYAAREETRREHLAALR
                     EVYGYKMFTGRGSRDLKAWLEDAAETARSNEDLARSLVEQCRATQTILPGITVIERLC
                     ADALVAAERRVDARIAGRLDKEMGNRLDALLTEDAGGSVTRFVWLRQFEVGQNSADMN
                     RLLDRLEFLRALAPGGSILADVPPHRVTRLRRQGERYFAGDLRDISGERRLAILAVCA
                     LEWRSAIADAVVETHDRIVGKTWREAKSRCDARADDAKAALKETLQAFSTLGSALLEA
                     HEDRASLEEAVQNAGGWSSLKGLVATAAQLTDTLAADPLAHVVHGYHRFRRYAPRMLR
                     LLDIQAAPVAVPLLEAAGIIARTETTVTLPLTFLRRGSKWQRHLNADEGDGQRLWEVA
                     VLFHLREAFRSGDIWLVRSRRFGDLKEALVPAEVARATPRLAMPFEPETWLADRKVRM
                     SDALRRLARAAKAGAIPGGSIENGVLKIDRLTAAVPEEAEAVVLDLYGRLPGIRITDL
                     LLEVDDDIGFTEAFTHMRTGVPCTDRIGLLNVLLAEGLNLGLSKMAGATNTHDYFQLS
                     RLSRWHVESEAMARALAMVIEGQSSLPMARFWGAGQTASSDGQFFPTTRQGEAMNLIN
                     AKYGHEPGLKAYTHVSDQFGPFATQTIPATVNEAPYILDGLLMTDAGQKIREQYADTG
                     GFTDHVFAVTALLGFQFIPRIRDLPSKRLYLFDPASCPKELNGLIGGKIKERLITTNW
                     PDILRSAATMLTGVMPPSQLLRKFAAYPRQHELAVALREIGRVERTLFIIDWLLDADM
                     QRRAQIGLNKGEAHHALKNALRIGRQGEIRDRTTEGQHFRMAGLNLLAAIIIYWNTKH
                     LGHTVTQRQHDGLDCPAELLAHISPLGWAHILLTGEYRWPKR"
     gene            86796..87383
                     /locus_tag="RTM1035_00430"
     CDS             86796..87383
                     /locus_tag="RTM1035_00430"
                     /note="COG1961 Site-specific recombinases, DNA invertase
                     Pin homologs"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA invertase"
                     /protein_id="jcventer:1101493006644_RTM1035_00430"
                     /db_xref="CDD:32144"
                     /translation="MTMTKIGYARCSTDKQDLTAQRQALHALGVSEDLIYTDHGLTGT
                     NRTRPGLDQALAAVREGDVLIVSKLDRLARSVPDARAIAEQLEKKGVKLALGASVYDP
                     TDPMGRMFFNILATFAEFESDLIRMRTREGMAIARAKGKLRGKQPKLSEKQQKELMRM
                     HASGDYSISDLAELFSVSRPTIYRTLQRAGPKISP"
     gene            87483..88247
                     /locus_tag="RTM1035_00435"
     CDS             87483..88247
                     /locus_tag="RTM1035_00435"
                     /note="COG0477 Permeases of the major facilitator
                     superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="major facilitator superfamily MFS_1"
                     /protein_id="jcventer:1101493006644_RTM1035_00435"
                     /translation="MLPSPRPSEPRGVYDRTTRGIRIYLATPRLRGLLALNLAAAAAG
                     AMVLVNTVVLVRGSLGLSESALAWTMFAFGAGSMIAALVLPRVLDVLPDRPVMFGGAT
                     LMVATLVGLALTVLGAGLGWSILLTAWLLVGLGYSAVLTPSGRLLRRSAHAGDRPALF
                     AAQFALSHACWLVTYPLSGWLLTVYGVVPALIGLALIAAFGMLAALKLWPSGDPVELE
                     HTHDNLPLDHPHLRGHRRHSHALIIDESHPRWATHL"
     gene            complement(88421..89470)
                     /locus_tag="RTM1035_00440"
     CDS             complement(88421..89470)
                     /locus_tag="RTM1035_00440"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00440"
                     /translation="MQYDIFYDPLVNAEGLEETSEDDLWFLPGPMDEEPDYLPPGPRA
                     ELRETAVLDDWRKAEAGNAARLARVAGRIGALDDRLRRGPKGWRHRLALMEAADLSWF
                     VGDRIGPDRLALWKSMRLSGVQDDTAALARVGWAVRRLTGGLGPEVDLSAFLDRRDPE
                     NLGVEAEPFAERAGGWLDLMAQAADLHPVTRACMGFHLWSLAGLGQHGDRMEAAVTAA
                     RIVASEGKGALFAPLAMGGAGGLRSGGPPADRLSRWLDGMETACLTAMRHLDDIEAWS
                     ARAEAEMSPLSGRTPPALCAVLTEWPLVSAPMAEALIGASRAAIQRNLAWMEARGLIH
                     EMTGQGRYRMWRVAT"
     gene            89715..90599
                     /locus_tag="RTM1035_00445"
     CDS             89715..90599
                     /locus_tag="RTM1035_00445"
                     /note="COG1961 Site-specific recombinases, DNA invertase
                     Pin homologs"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00445"
                     /db_xref="CDD:40337"
                     /translation="MPLIGYARVSTEDQTPLPQSQALKSAGCAEIHEEQASGGNRARP
                     VLGRVLERIGKGDTLVVVRIDRLARSLSHLLEVIERLEAKGAFFKSLQDPIDTASPQG
                     KFTLQVLGAAAEFERALIRERTKAGLASARTKGRVGGNPGLRARDPAALRKVRLARQD
                     GYMERLNETAQDWVPQVRRLRPDLAWEDVVRIINGPLPEARRWTQSRLLRAVKAYVRD
                     GFLPTEVLARAGRRETDDRLPAIIAGIKGADPDITLQAICERLESMRERTPRGRTRWQ
                     PSSVRMLLERAERIGLLE"
     gene            90715..91878
                     /locus_tag="RTM1035_00450"
     CDS             90715..91878
                     /locus_tag="RTM1035_00450"
                     /note="COG1373 Predicted ATPase (AAA+ superfamily)"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00450"
                     /db_xref="CDD:31564"
                     /translation="MYMRQTHQLVQSALANQAAVVLLGPRQVGKTTLALDIASEQPSV
                     YLDLERDADRQILTEPDLYLDEQTGKLVILDEVQQMPGLFKSLRGQIDQRRRAGFRTG
                     QFLLLGSASNVLLQQSAESLAGRVRYIEMPPLQLTEVGTDQLNALWLRGGFPDSFLAA
                     SDQASMDWRLDFLRTYLERDIPALGPRIPAATLRRFWTMLAHVQGGLLNAAALAEGLG
                     VSGQTIGRYLDLLVDLMLVRRLQPWHENVGKRLVKSPKIYVRDSGIVHALLSIGTTEG
                     LLGHPVVGGSWEGFCIETLLAATPAGTEPFFYRTSAGAELDLVLRLPGGDIWAVEIKR
                     TTAPKVSRGFHTGAEDVKANRKLLIYAGERDVPLAEDIRAIPLEQGIGLLRAL"
     gene            complement(92133..92321)
                     /locus_tag="RTM1035_00455"
     CDS             complement(92133..92321)
                     /locus_tag="RTM1035_00455"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00455"
                     /translation="MPPHSASLPYGERPATRCAKAVLFDLATGSMLISRSEIKMQIEP
                     KPLTGSLSAPVKLMQPEG"
     gene            92724..94022
                     /locus_tag="RTM1035_00460"
     CDS             92724..94022
                     /locus_tag="RTM1035_00460"
                     /note="COG1192 ATPases involved in chromosome
                     partitioning"
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein a"
                     /protein_id="jcventer:1101493006644_RTM1035_00460"
                     /db_xref="CDD:31385"
                     /translation="MVAVNKELTLRQRIKRTWSMRQCARFLNVSIQYLTKFANSSDDF
                     PAGEYVGRERVFTLSELMHMRALLAASAKRPYDYLAWRKPDAPLPVISFASQKGGTAK
                     SLSAAHFAQYLSLHYGMRVGVMDADPQSTITLYFVGGEGLPQMPDENTASMVDFAGLF
                     QSEDAPYTDHDAQTLDSFFLKTSWPGLRLLPAHGETSEGEIQIARLVREAPAGKSFYR
                     YLRDAIDRWKAGHPPKTLPNELVVDGKVDQERLDTALTETLDVIIIDYQPALTLFQLN
                     NVIASTSLVIPQTMKGFDIATLSTFVTGLLGMLQHILAHERIEIGTGANMLLPTIVQR
                     SNAQDLNHIGNLLEHCPTEILPVFYLRSDAISNASDVYQSVYEYEPDTPGKRKGINRF
                     ITNADAVNDAIISRLWPGLERGYANTWMDEFYEDDGEGEA"
     gene            94019..95047
                     /locus_tag="RTM1035_00465"
     CDS             94019..95047
                     /locus_tag="RTM1035_00465"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00465"
                     /db_xref="CDD:47776"
                     /translation="MKRSIPRSLVSKATNLDTNKERASGSEGSTESSDAVSTPFKGAG
                     SAWKSGALAQSQAAVERSRAELCLDILNGRHELSLSPDQISDPMGTDRRQDWMSQEAF
                     RSLVNSIASNGQDTPILVWPEDPDWQPDPLDPSNIAGVPFVMLTGRRRLAAASELGVP
                     LRAILAPPDARNAENSKFEMLFLRFRENEERENLSPFERLVSIGEMYETLASGEEKLT
                     AVAFAKKIGVHESLVSRARSVFAAQDQILNTFKNVYDMSFRDLQGALASLERTNKAKP
                     KPKTKTKPQKLTVKRKVGNRNLSVTSVDGNLSIKVAGVPIDQERLEKLGDLVANYLNV
                     EDTEKDTD"
     gene            95275..96555
                     /locus_tag="RTM1035_00470"
     CDS             95275..96555
                     /locus_tag="RTM1035_00470"
                     /codon_start=1
                     /transl_table=11
                     /product="replication intiator protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00470"
                     /translation="MKHTGWRKPTPCLGVAEQLAQAGEQVAVPKTRAFVALKRVGAHI
                     GLKAGDMMLLDTLGAFTQAQDWEEGQRPIVWASNAYLMEQTGFSLSALKRHARRLAEI
                     GVISFQDSPNGKRWGRRDADGRIIEAYGFDLSPLSARVEEFEELHAELQAERELCQRL
                     KRQITVARRMIRARIEAAISSALRGPWSQFTGLFEELLDRLPRRHEASEQLARLLTWF
                     KDLQERVEAAYLKATEVVQTVENTPETKEQVSGKTQEMNPREVISEPHILITNQLNPV
                     TSNSSEKEEAAGVVPNAEPEERVDRELEDWVAEVRKKRTALDLPTIMQACPEFASWAR
                     NMGGFLKDWGDLHRVAGQLRPMIGISEHAWNVAQDRMGTQVATAAFALVFEKHSTGEV
                     ASPGGYLRGMVEKAGAGELHLERSFYGRLNGQAA"
     gene            96914..97399
                     /locus_tag="RTM1035_00475"
     CDS             96914..97399
                     /locus_tag="RTM1035_00475"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00475"
                     /translation="MKGILMQTGVLRVLRATAASWWRHKELRRSGQTGQAQRRERETV
                     LCDLSYLKQAALLPNAHVICGEGGTFIHLGWTTVSTFAPIERFPLATLAVARGTPFID
                     IRPVTDVIAFANLPRVAQDESVDPEPWGPGRSASLTTYIDMVEALGGRIANDPRPRQS
                     T"
     gene            97440..98378
                     /locus_tag="RTM1035_00480"
     CDS             97440..98378
                     /locus_tag="RTM1035_00480"
                     /note="COG4227 Antirestriction protein"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M, neutral zinc metallopeptidases,
                     zinc-binding site"
                     /protein_id="jcventer:1101493006644_RTM1035_00480"
                     /db_xref="CDD:33952"
                     /translation="MARSRTPKFDASEVITNEIIRIIERGVLPWRKPWTAGGSCRPLR
                     VGGEPYQGVNNFLLTMRTVMAGHSSPFWMTLPQANALDAKVRKGEKSSVVVYYGQSRR
                     DAGDEHDHSDGDDHSEEARIFRFQKSYRVFNACQIEGLPDSFYPDPEPAPEHPPSEPI
                     AHMQAFFDAIDITTVFTGTEAYYLPPVDKVYMPSITRFQDPRNFYGVWAHELAHATKA
                     PHRLNRDFGFSKFGNTSYAREEIVAELTSVFLGQTLGFTAHTLEMNAAYLHNWLRVLR
                     SDKGAIFKHAADAQRACDYLIARSEAGRAGRSAKAA"
     gene            98402..98611
                     /locus_tag="RTM1035_00485"
     CDS             98402..98611
                     /locus_tag="RTM1035_00485"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00485"
                     /translation="MSCKEPKTLRVACFKDGRRKIITFKRGAYWWSSSEGAYPLSAAL
                     ETIKENGGWVETIPNPNYRPKGLFG"
     gene            98699..99088
                     /locus_tag="RTM1035_00490"
     CDS             98699..99088
                     /locus_tag="RTM1035_00490"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00490"
                     /translation="MAMTVQPQPDRPDSTVIAAQNDAFRKLACLGVPPAQPIQGRMHV
                     TRALMEAGDGFMAEAVKATGEFATFEPENDPEGWHDFGAVEIRGETVFWKIDLYEADS
                     DFRYGAETPDNPATTMRVLTIMLARDW"
     gene            99245..101227
                     /locus_tag="RTM1035_00495"
     CDS             99245..101227
                     /locus_tag="RTM1035_00495"
                     /note="COG1475 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="parB-like partition proteins"
                     /protein_id="jcventer:1101493006644_RTM1035_00495"
                     /db_xref="CDD:31664"
                     /translation="MTTSFAPLTVAIGDLVPHPANVRSNAPETYDPENIAHLKASIAV
                     LGLLQPLLVQKLDGKYAVLAGGRRHAALKELVADKASKGFMAKTKVDCRLVPDDCDVT
                     TALSLAENITQAPMNAIDEFEAFARMMEVDGQTPETIAKTFGTTVAAVKGRLRYGLIH
                     PDIRAAARGKVITLDTMKAFAEHPSQEAQREVFEALTKDGGYLQAYTVRQALKSRGVQ
                     VSDDIGAFVRADYEARGGAVAADLLEEHSVLEDAALVETILLEKLGAAAEEARTRLGF
                     AWADAMVRYDYATMADYGRVYPGPIEPDEAAQKRVDEITAELEKLQLEMEDEGLEDGA
                     YNALYDRVDALEEEARDLQEAYSAEDLARSGVIASWQGGQITLHVGLVRPEDTVKEEG
                     ARGSSASPTGEEAPDPGEITYPASLAEDLKTERAMALGAAMALHPEATLDLTLFKLVS
                     DVLASGMSVTQAIKIDARKEYRNHAKMDEIDETSLEQVAAAHDALDLSWLDDTRPPAD
                     QFAAFRALEAGEKAKLVAFATASTTQSCFARDRQRDSLMHALEIEIMPDIRAHWTPNA
                     ALFNRFKKAWLLRILGEDLGLAQEAVTLASSSKKEIVAFCDKLFAEPFATLTDAQRAA
                     VAAWCPPMMQTAGVACDEAEPAAEAPEPDSEVAQAA"
     gene            101300..101893
                     /locus_tag="RTM1035_00500"
     CDS             101300..101893
                     /locus_tag="RTM1035_00500"
                     /codon_start=1
                     /transl_table=11
                     /product="predicted regulator"
                     /protein_id="jcventer:1101493006644_RTM1035_00500"
                     /translation="MAILKFSASAVAAQIAHARDCKTFLPNWNGPVDRPALILIVGNG
                     VHLRSNGIDGTTTRIVTTEQADPSFAFADGMNPFRDTDWMAQRRMAFRDLTGQFYTDI
                     LDDVQVLIDRGRGAIRLATDGHSIRVFVRRASDYLIGGTYEVPSGLGGTFRVILKDAC
                     DTFAIVQNCGNCEDFDAMQPYRVPLDALMEIDGRRAA"
     gene            101996..102649
                     /locus_tag="RTM1035_00505"
     CDS             101996..102649
                     /locus_tag="RTM1035_00505"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00505"
                     /translation="MGWLFYTDRRVQTYADEKAEIARLCTFESDTRKTELIKSCKVGS
                     TWYAAARVTSIDGTPVEDTTYVTDADGSITFAAVFLTRYDDGCWGYKDMEESAGPVES
                     RAPLSLLALLSELKDPDSYAHAWRQRCQDWAAIPDYEEGDKIKLAAPVTLTDGSTCQI
                     VTATHYRRGRQKRRCYRIEETGGLVRLSKASLAGSELLSSAKGAASPVLAEFLAGRN"
     gene            102774..103100
                     /locus_tag="RTM1035_00510"
     CDS             102774..103100
                     /locus_tag="RTM1035_00510"
                     /note="COG2002 Regulators of stationary/sporulation gene
                     expression"
                     /codon_start=1
                     /transl_table=11
                     /product="htrA suppressor protein sohA, putative"
                     /protein_id="jcventer:1101493006644_RTM1035_00510"
                     /db_xref="CDD:32185"
                     /translation="MTALAQDVSKLTDRYQTTVPAGVRKQLKLGKGDQIRYCTEPSGR
                     VYIEPVRSDEEDPVLGAFLDFVEADIKAHPDRIRAFDGALHDRLAALVGDVDVDLDAP
                     LSLEDE"
     gene            103097..103615
                     /locus_tag="RTM1035_00515"
     CDS             103097..103615
                     /locus_tag="RTM1035_00515"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00515"
                     /translation="MSGDSVPAQAPLVVNGWSIYAHPLFLDQLEGLIEEVEARKARDP
                     KTWRKKNPTKRLAAIFKLVTEAIPADPGAAAFRQGGTLGDHRKHWFRAKFFQQYRLFY
                     RFNSDAKVIVVAWVNDDKTLRAYGSKTDAYATFKGMLEDGNPPDNFDALLKEAAAAGK
                     RFETSLEAVPDR"
     gene            103710..103874
                     /locus_tag="RTM1035_00520"
     CDS             103710..103874
                     /locus_tag="RTM1035_00520"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00520"
                     /translation="MIEAENDRQHLGLEEQCAPDLTGHRFPIAVHVADMPDDLGKLLD
                     IGLEEHFRGG"
     gene            103864..104016
                     /locus_tag="RTM1035_00525"
     CDS             103864..104016
                     /locus_tag="RTM1035_00525"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00525"
                     /translation="MAADVNSYDAWFCAQVQAALEDARSGTSQVQVMQAAQALIDAKR
                     EVEPKS"
     gene            104118..108380
                     /locus_tag="RTM1035_00530"
     CDS             104118..108380
                     /locus_tag="RTM1035_00530"
                     /note="COG0286 Type I restriction-modification system
                     methyltransferase subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="putative methylase/helicase"
                     /protein_id="jcventer:1101493006644_RTM1035_00530"
                     /translation="MSKPRTANPALAISEADLASALAQIGTEVDDQPLRSSALARIMR
                     ETFHGSDAGGAWDWRIAYDMMQAAAVQVVLRGNGVADDIAAAKLLASRLLTETRRSEQ
                     QIRLQQFSTPLPFAALVLRAAAIRKGDTVLEPSAGTGALAAFAARAGATLVLNEIDPF
                     RQSLLRAAFGGDVTGHDGEHIDDLLQAPVLPDVVVMNPPFASSVDRSRDKHIAAKHLI
                     AAAKRLAPGGRLVAIMPPGFTPERDAAHWSRACGLLTPRLALTMPGQVYRKLGTSVET
                     QLMVFDKVQEGGEMIRATLCDLDEALPFVDAVAATRTEMSPAQRVEAIPHARPTVRSF
                     VPRKTAAGVITAPTARANAVRPLSFTSLQTPRNNMPISDIYARYRPQRIEIADAQEHP
                     TPLVESIAMASVAPPMPSNTGRDDLRLPARLIEEGHLSEAQLETIIMAHDAHRRDLPG
                     RFAIDDDQTKLTRADDDPNARAYRLGYFLGDGTGCGKGRECAGLILVNWLAGRRKAIW
                     VSKSATLIEDAIRDWTDLGGSPADIQPLSKWKPDQPVPMGDGILFVTYATLRSAGKCG
                     TTRLSQILDWMGAEFEGVLAFDEAHAMQNAAGSEQGRGVKPSQQGLAGLRLQLAAPRA
                     RVFYISATGATSVHNLAYAARLGLWGQGPEYPFPSRESFVSAMEAGGVAAMEVVARDL
                     KTLGLYTARALSFDGVEYDVLEHALTPAQIKIYDAYAGAFRTIHHNLEAALTATGVND
                     ASGETNASAARASAKSRFESTKQRFFNHLLMGMKAPTIIRAIEHDLAAGHACVIQVVS
                     TGESLLKRRLETMDSDDELVEGALTPRDYVLGYLEQAFPIHAQKLVEIDGSMVAEPLR
                     DETGALVVSREALALRDAAMMELMTLAPIPAALDQILWAFSDEAVAEVTGRSIRPLKA
                     EDGHLFIEKRAASSNSSETQAFMDGEKDVLIFSDAGGTGRSYHAAQTAKNQKRRRHYL
                     LEPGWRADAAIQGLGRTHRSAQVSAPFFRVCTSDVHGEKRFTSTIAKRLDQLGALTKG
                     QRETGSQGMFREEDNLESPIARAALRGYFADLAAGRAEAMSYESFTDWTALRLIDMDG
                     VLLEELPPIQRFLNRVLALPIHMQNALFAEFMRRIADQTERARAAGTLDLGVETLRGE
                     KIEQVSTEDLWTCPKSGAVTRIIGLEVTDPVHVLGAKEAMSRNPDKLPMVNRASGRAA
                     LISARPMQMYDEDIVTLMRKAVRPNGSSYLEEARFESSAWEEIDRPEFAQIWDAEAAS
                     LPKTTTTKLYLLTGLLLPIWKDIPTTNERIYRVTPDGATAMIGRTLSEEGAASLRARF
                     LVSNPQTPQEMLTAALGTTAPVDLGRGLTLTRRRVAGEMRLELGGADRGMIDGLKALG
                     CFTEIIAFQLRVFLPHGDGIDTGSILARIVGQRVAKVAEQAA"
     gene            108501..108887
                     /locus_tag="RTM1035_00535"
     CDS             108501..108887
                     /locus_tag="RTM1035_00535"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00535"
                     /translation="MTNPQIDYAAMAAQWRAERETTLKASRTELLAQLRALGISEVTA
                     EYEGYGDSGNVEDVTVQPAEVQLPEALATEVGDFAWSLAYHHHPGFENNEGGYGTLTW
                     DLRNDSITLDHADRYVECSHSYDEGL"
     gene            108889..109350
                     /locus_tag="RTM1035_00540"
     CDS             108889..109350
                     /locus_tag="RTM1035_00540"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00540"
                     /translation="MAHPLHHAESSARKFGGVPSDYQAVHDWFDASKEHLALFTHRAL
                     RHHAQGLFEAERVFGLTLTNSAGRDIPVRWIGEQHVREDCQGRIPSMADWQRRIQPEP
                     WMANGHIDRHSGDEPCGDPRVAWASEVAAGRTVLGLKDWKAARATRATQSA"
     gene            109451..109753
                     /locus_tag="RTM1035_00545"
     CDS             109451..109753
                     /locus_tag="RTM1035_00545"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00545"
                     /translation="MTLNDIKAAVDAGQTVHWANTGYIVHKDRLGQYLITYQPNGSCI
                     GLTDRSGHRLNGKEVEFFIGRSKDSAENPGSQSRPDGQGRGVAPGGAGAFPLGRQL"
     gene            109878..110606
                     /locus_tag="RTM1035_00550"
     CDS             109878..110606
                     /locus_tag="RTM1035_00550"
                     /note="COG5489 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB-like nuclease"
                     /protein_id="jcventer:1101493006644_RTM1035_00550"
                     /db_xref="CDD:45185"
                     /translation="MFAGTLTRNVETAAAEYTGMIHSTRFDIAIQLEARAKMSERSPD
                     FDVTAINKSGRKVRVGTAWNETGNTSGNPYISMQIDVGLGPFRVNAVQTKEARSAQSG
                     EFEIIPLVSNGLMKSGSISGELTAMDADNAFTGYIANMMFDLEFMLIENSYKSEETHP
                     DYRIEVSSPRGTPIRVGSAWMAKSSRTGNDYLSLLINTPDGDLRVNAVQNEEQRGGQT
                     FSIIPFIDSGEQPQDAGAGLSLVA"
     gene            complement(110980..112359)
                     /locus_tag="RTM1035_00555"
     CDS             complement(110980..112359)
                     /locus_tag="RTM1035_00555"
                     /note="COG3673 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00555"
                     /db_xref="CDD:33471"
                     /translation="MGGSRPDQRLSNVYKMYRAMRPGPDSPINPKDQVAFYDPGLGTG
                     ESGGLFGRVKPILESAVGTGIDHNIIDCYEQIIAHYEPGDRVLLFGFSRGAYTVRALA
                     NVMNLCGIPTEMPDGKPVPRHGPGLRKIAKDAVKFVYNHGAGKPRGQNPYFKHREELG
                     RRFRQKYSSAPQEGDENQGNVQPTFIGVFDTVASLRTAVVRTLVWGITFATGAAFVAG
                     LVLGWSLLLVIPLGALLGALIWQLGSLLLDNFKYFADDPDRKLKIWRLTDWPQILKTG
                     HFAAWNKRNYDMWLDPDVNHARHAMAIDEDRADFPRVGWASKKAAIETKDREPAWLKQ
                     VWFPGCHSDIGGSYPEAESRLSDIALDWMIDELKECVPSIKINENYLNRAPDPLGLQH
                     REDAIVRLGPISIPWKKGIREVGDDFPLHPSVQERMQATAVAQFGEVKPYRPQQLSKR
                     RDLKRFYET"
     gene            complement(112432..113013)
                     /locus_tag="RTM1035_00560"
     CDS             complement(112432..113013)
                     /locus_tag="RTM1035_00560"
                     /note="COG1172 Ribose/xylose/arabinose/galactoside
                     ABC-type transport systems, permease components"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00560"
                     /translation="MKTMPPDYDIAFEDQVRECFGRVVYTHKTHERMADRSADTLRRY
                     KMAQIALSALTSAGAVGVVVGDETWVEIVTVVISFLTLFVAAYLKNFDPGAIAQKHRD
                     AAAKLWNVRECYLSLLTDLPRLSHEVAVERRDELQAMLAALYEGAPQTDGKAYKEAQR
                     RLKEMEDMTVTDDEIDCFLPLSLKRSGGRPKQK"
     gene            complement(112994..114319)
                     /locus_tag="RTM1035_00565"
     CDS             complement(112994..114319)
                     /locus_tag="RTM1035_00565"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00565"
                     /db_xref="CDD:31932"
                     /translation="MGISDDFKTFLDNIKIDNAATIALRYGEVTASLNKEFRDTESKT
                     ANSLQVGSYGRWTAIKGISDLDMIYIMPAGKWDTYKEEGQNRLLHDARDAIKRRYPST
                     TVKVDRLVVRVLYNDFHIEVMPAFKLADGSYKYPDNAKGGSWKITKPQAELDEMREAN
                     ERKNRNLRHLCKMARAWKNKQGVAMGGLLIDTLAYNFLESTDEYDTKSFHYYDYMCRD
                     FFKFLADQPKQSEYAALGSRQRVRVKKRFERKAKKAYDLCVKAIDASGQKNERQKWRD
                     VFGNAYPAPVRSAAGEAAAFAHVFKNTEQFVEERFPVDIRYHLRINCEVTQDGFRPGM
                     LRDLLERHGVLLPKKSLRFFIADATDLPDDAEVFWKVLNRGEEAERRDMIRGQIVRDE
                     GRGERRETTNFRGDHLVECYAVSRGVVVARDTVRVPIRVRDAEDEDYAA"
     gene            114803..115132
                     /locus_tag="RTM1035_00570"
     CDS             114803..115132
                     /locus_tag="RTM1035_00570"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00570"
                     /translation="MDAFSRLAEDWELSTDEQITLLGSPGRSTFFKWKKSGGNLPHDT
                     IERISHLLGIYKSLQIVLPNPEAADGWIKKPNAFFDDRSALDVMLGGNVVDIYKVREY
                     LDAQRGG"
     gene            115113..115859
                     /locus_tag="RTM1035_00575"
     CDS             115113..115859
                     /locus_tag="RTM1035_00575"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00575"
                     /translation="MHNAVDDFDVKQINGVFYVLIPSRFPPVPLYQRIAGGRDDQVAA
                     VADLHNPRVMEKQRLLGQGCVTADDVSPRFQNWNHAPFAYSNPEGSWFFDRFVRCLEM
                     SQDKQTALAVSVAKRALFLSRTAEAPIGLDMRMLSRKVSGAFLDLRALPVELCQSERR
                     KLGKLLWERAKTEGLSGVLFRSFERPSGTRICVLDGNVLDRAIQGEHFRYSWDGEKVS
                     SLYAFDNSGGDEDNSIDPRDLGQDEDILAA"
     gene            116598..117527
                     /locus_tag="RTM1035_00580"
     CDS             116598..117527
                     /locus_tag="RTM1035_00580"
                     /note="COG0840 Methyl-accepting chemotaxis protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00580"
                     /translation="MAYDTANTYETIELFGLTEKDAQLPIPEDHILTDHIIRESFEAL
                     LGQLRGTGLEAEIEPLAHGLATILQRRKVALGKEVDRTADKIGALAKSHDGSEIAETA
                     LEEAQARFVQLREIVGAIEVMSEAAAECYEVETGHAFIPAAGSRASVRAQETGAVFEA
                     RQLLEQHDRETAEKSKVEGVPLIVSGATDWTDVDVIFNTLDKVRERIKQNRNEEIFLC
                     HKGGKHGAEMIAARWARARGVAQARFDPRWSAHGRAAPFKCNDEMLDDKFAATGVVLF
                     GGNGVALNLGQKAEAKGLTVMRVADPVKKTAET"
     gene            117628..118677
                     /locus_tag="RTM1035_00585"
     CDS             117628..118677
                     /locus_tag="RTM1035_00585"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00585"
                     /translation="MRAKQNLEMIGMTPLSSIAMSAYTDLVRLLKDDALSGVEGKPTL
                     KERGDKAYWYAARRVGTEMRFIYIGEDSDDTRARIDRIEELRATAKDRQAERSRLVRL
                     LRAEGMTPTDRATGSILSAMAAAGTFRLGGTIVGTNAFRLYEGELGIRLPIGGMANTG
                     DIDIAQFEKLSVALQDQVDPGLAETFSALKFDPLPALDQGRTWRWAQGGSGQLVEFLT
                     PAFGDETIRDLPALGVNAQGLNYLNFLIAEPIHAAAIYRSGILVQVPRPERYAIHKLI
                     VADRRRDGAGSLKSAKDREQAAFLIEAMAEDRPDDLARAYAAALEVGPRWREHIGTSL
                     KRMPETKLILGGLGV"
     gene            119319..119525
                     /locus_tag="RTM1035_00590"
     CDS             119319..119525
                     /locus_tag="RTM1035_00590"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00590"
                     /translation="MTNHYVATVPVKFTDTDGQERTRFQRVGAMFRNTRNGDGSEFFS
                     LKLDFPVAVSELVMFPPSAKDPQD"
     gene            120079..120636
                     /locus_tag="RTM1035_00595"
     CDS             120079..120636
                     /locus_tag="RTM1035_00595"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00595"
                     /translation="MEIVREAAEGVSTSVLAERFGVSVRAIQYTLKADAERQTDAAIP
                     VSAVSVKVTAAELAALDAVLEKAGIESRAEGLRRLIQAAGGVFVPDAQMAAEMARYRA
                     SLHEVGNGVTQIAKQMTQANRRGQGAVGGTSAEFTELRLAQMRGLARFILDSADEIDL
                     LLRRRRDAMQLEATAALREFAHAAE"
     gene            120623..122956
                     /locus_tag="RTM1035_00600"
     CDS             120623..122956
                     /locus_tag="RTM1035_00600"
                     /note="COG3843 Type IV secretory pathway, VirD2 components
                     (relaxase)"
                     /codon_start=1
                     /transl_table=11
                     /product="Relaxase/mobilization nuclease domain"
                     /protein_id="jcventer:1101493006644_RTM1035_00600"
                     /db_xref="CDD:43358"
                     /translation="MRLNDAVHAVTGEVFRDGWSRVRGSMQGLHVAKQTQLVRAAAGH
                     RPAVFKAIRGGGTHTKSQLANQLDYLTTKSTHIVDSSGFLDGKAKLEAGDIKDLTERF
                     AKRWDAGFKPKLGQTTHMLMSFPVGTRGVDVRDIATDVAERFFQSDEGHFDYIIAVHE
                     DRDHPHAHLVLNRRSQEGEFFFLGRNHRFNYDDFRLAMVEEAEKYGVRLEATRRVDRG
                     VVHYPARTSEVYDAKEEGRAPRERERVGQDLTRTLAEIANTRTVYHSLAAEASREARE
                     DIAAALFRAGEVLARSGQVDRTGDVYMAEDQSFEDLRSLYAEKLARVQGMIAEKSDAE
                     RPVLEKRLIEIQTQVQHMQPLGLRSSTLSETPSEGGIYSEANIDASQRERLAEPDLRS
                     RIDAALRGTGISTSEVVARIETGASNAALEHQWIANDLSKVAEARDLNLERRADLEQA
                     RDILNDVHVELGTLLERENVLRRDGVMEAEPISERFHYHRDAVRAMEGTIRQEMRADG
                     LTAQQIEDRDWEVVSRAERRIETEQRAYLVAHPELLALPGDVIDRSEPYRETITDVAR
                     ASEITREVDRIMEARDLRTPVADAVTDDLRARYPDMPSHLARGLGATYAAVVEIRDTE
                     AINQVRRETEMRDGLGSGTRDALLAARGETAPQSDNTDRLADEIARVLDHERAGELSA
                     PFETEADREAFREEIARLLDDRQLDRLTSGDADALEKVLEDRLDRLYVAKVYLQSDAA
                     TANTEALRQVVDDLADTEYEKHRATDVDGETERGQVH"
     gene            122965..124965
                     /locus_tag="RTM1035_00605"
     CDS             122965..124965
                     /locus_tag="RTM1035_00605"
                     /note="COG3505 Type IV secretory pathway, VirD4
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAG protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00605"
                     /db_xref="CDD:33308"
                     /translation="MGKARIATGVLLVTLVTAAMGYTIASAVLTYQDLGFGAEIDFAY
                     IAQNYLAILDRRPEDAQLIHLIIGSFAAAGLMLSLALSGSALTRFGQTHWQTAREMKA
                     NGFFGAPGTGFILGKLGTPGSRANYICSKVFPHALIVAPTGRGKTTGFVIPNLLTWQG
                     SAVTLDVKGECFEATARHRAAQGDKVYRFAPTDWEGKRTHRYNPLLRIFELKDPARQQ
                     MELQLLATLFLQSDNDRVQGLLKGGIDLFVAAGLLAFQRKRPTLGEIYRIAASGGNKQ
                     KEYFARGHEVDNRAAKLIFTRLASTNNDTLTSYVSLLMTSGLDQWQNPAIDEATAVSD
                     FDFRTIRKKPFSVYLVVQPLMVKPLAPLIRLFFSDLLSAMQEKDPGPDEPWPVMIMLD
                     EFNRLGKMPIVVESIETLRTYRGHLAVVTQTIPALDEIYGENTRRALQGNAGVKLYLT
                     PSDEKTVEELSKAVGKTTKTVITRSQSIGKNPFEGRSQSTRTEESSLLPEDEARRLPL
                     DEIVMVIDAQMPVRAKRIQYFDDRLFKAIHATQTGELPFPEPGGGGPQGNLPLSVRAM
                     PMTPPANGPSGSDAVVETTRQEAGSQTSGQTDVAPKKTAPVVYAVVAEEQRQMEMDFG
                     GRVADAETVGVDDEAQVRSAVDGLDEMEAILQEGDGEKLVAR"
     gene            125035..125244
                     /locus_tag="RTM1035_00610"
     CDS             125035..125244
                     /locus_tag="RTM1035_00610"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00610"
                     /translation="MKTDYRDAAKLAKLRQIGELIAFRAVLFGYRTPLELTKMECKKI
                     KARRTIHRAFSLTSSGFREDYSGVI"
     gene            125477..125974
                     /locus_tag="RTM1035_00615"
     CDS             125477..125974
                     /locus_tag="RTM1035_00615"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00615"
                     /translation="MRNPDYLANELLTEFESSGERDLLTIAQRIFDDREPDLRRLPMV
                     RYLFGAFEPLDNALAILRAADLIRIKRDGVPGVKIREHLYLLTTAGEDALGRISAAAP
                     ELSWYRDRACIVARVAGAQGGKALKDRQYLQAEYAGTELSHTIQPITDRVLARLAAIL
                     ERLDE"
     gene            126058..127641
                     /locus_tag="RTM1035_00620"
     CDS             126058..127641
                     /locus_tag="RTM1035_00620"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00620"
                     /translation="MADRPLRPAPTLTIRRIAFRGEKRGTAQGAIDFDWSELTAGVWA
                     VTSQRNLRGKSTVLEILLWALRGRPKGLQDDVRRWLSSVCVEFDVDDQRYVVEFAVDE
                     RVPRGSLARRRPSGETDELDRFMSDEGFEAAMSRFMMNTLDLDPVTAMQGKEDERKVV
                     EHGWAALSGGLYFGGDHKQLLGDVQMGGLPARMLQMYIGIPWATTVMQASTVKRELEQ
                     EAEKASKAATAAAKDAEIARARIDGELQAAKKILDGFAQVTGTASEIERLAGEVARLS
                     PIALDLAQRLARAEAETTELERLATGDERAVRDLRENIVATQFFNGLKPVCCPRCETR
                     VSNERLKRESADLSCSLCAEEIPIDEMEGADDGLDAIEQRFAAAKAAADRARANTNAL
                     SVKSKSSSDELENARRELTKAATSATFEERRKAELDVARLEGALKERQTPARPVIVSS
                     DVTLINAAHAEADKAYNAGRGDILERLNTEILALGQRLGVQMLEEVKLNTNASLRLTK
                     GGESTSFSKVTAGERLRWL"
     gene            127716..127880
                     /locus_tag="RTM1035_00625"
     CDS             127716..127880
                     /locus_tag="RTM1035_00625"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00625"
                     /translation="MSPDDLTAVLSELQAISRETVGLQIIIGSANASAIVDQLGEQWC
                     RSATGDDYLW"
     gene            127906..129822
                     /locus_tag="RTM1035_00630"
     CDS             127906..129822
                     /locus_tag="RTM1035_00630"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00630"
                     /translation="MSALDLLESRLASNQPITIDDLGGVDEILADADRLYAAPFLDIL
                     AYMISAAPPTEGARLHDFLVDGFDAARDPQSFRDAIDQLIRSATLRAAMAQAVVAIFT
                     RRIREHATEREALIAAYSLEGLFRLALEGDVSRHRPLLELAEVAPDAPGPFAQHVAKI
                     GGAAFHAWGDDDLLTMLHRLLDNEEAEGEAAFELGLAHLARALEGEDMATIHARLGTA
                     RLLFERACEADDDRSDARAYRSAIDLVLGFAANRSAADMQETLADLVAAARDRAAVLR
                     TGCVTPWLAPRQDVDLEWFELARTVQRAADDLARPSWINAATTMDRILAVYDASCTIA
                     HGDGLRSMLRPRVEASFLRERGLAAHLDDLLSEGQWSDTQRTIAQHLRCRLDEAYRAG
                     ALPGKAGENEQYPLLARILPKGTSTEQIPSDMVRALEAGLASHAARSTELANPILQRM
                     LALLRDQLSDSSEYKGEVQRSFDAVLQQILIFCADRQNADIRDLGTRGDYLRVRDPSE
                     ADLQSDLRDFLKGNLVGAEVLTEVRGVATGRTDIYISLGGPAFVIELKKHIGEFSPEA
                     AKRYVAQATSYQATNVKLGFLGALELVDRSGPVPSIEECLWHSAYIPEGGALGRHLIV
                     FRVPGRLKSPSALR"
     gene            complement(129850..130254)
                     /locus_tag="RTM1035_00635"
     CDS             complement(129850..130254)
                     /locus_tag="RTM1035_00635"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00635"
                     /translation="MLTSTLQAYIGDVFLACSEKAFGRQLTEDERKDYAKTWSRWGNP
                     SDENIIALFRRLGINDVFNGLSWQGQSTTTLKKKLRIMNQVRNKIAHGQDIMVDGQPY
                     ALTLNSIQGWRRVVQTFGERFEVHALSKIIRD"
     gene            complement(130817..131893)
                     /locus_tag="RTM1035_00640"
     CDS             complement(130817..131893)
                     /locus_tag="RTM1035_00640"
                     /note="COG3704 Type IV secretory pathway, VirB6
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="TrbL/VirB6 plasmid conjugal transfer protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00640"
                     /db_xref="CDD:33499"
                     /translation="MSVVTYFVETSQAYLDTAAETQFGAVAATVGTLLVLGTTLVVIL
                     VGINMIYQYRAMDGHTAFWLAVKIGLIGIFATNWMQFNAFSSAILYGIDSIAGALVAS
                     VGGGSPGPSGTFAEEFDRLIAELGDYLNAAGSELNWMAGAMLDIVGVLLLSILGGLAA
                     FILVASRLMIALLIGIAPVMIFLTLFEVTKDYFARWLSALISFAIYPIVVAGVFATIT
                     GVSSALIGELGDPEGASNIGALIPFFMMVLMAKGFIVATPFIVRAISGNIMMPALSGG
                     LGGGYSFARAAMGSQQAYNRYLIGGASGAEYAALRARQFFGVQQMPVRQGMGQTGSGG
                     GTGSADSGSKMLAQLARLGRLGRR"
     gene            complement(131906..132319)
                     /locus_tag="RTM1035_00645"
     CDS             complement(131906..132319)
                     /locus_tag="RTM1035_00645"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00645"
                     /translation="MRQAGCTLVLIALVLGLTSAPGFAERNLVPTLDRSFDVCPDRPA
                     EPVWMQQIPLRQVYHRVLVQDIYRAQNLEQVVEIGNCDCATRFPSWDAAEAVFRERYA
                     SNERWEMLQASDAYNRRANAARTAAKAICDAAGNW"
     gene            complement(132316..132510)
                     /locus_tag="RTM1035_00650"
     CDS             complement(132316..132510)
                     /locus_tag="RTM1035_00650"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00650"
                     /translation="MKTFEYNILSFPMTRKTSLSDMQASLNEKGADGWEVVSISTSEF
                     ANVGHTVFLKRETTPAGATA"
     gene            complement(132507..133493)
                     /locus_tag="RTM1035_00655"
     CDS             complement(132507..133493)
                     /locus_tag="RTM1035_00655"
                     /note="COG0630 Type IV secretory pathway, VirB11
                     components, and related ATPases involved in archaeal
                     flagella biosynthesis"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein E"
                     /protein_id="jcventer:1101493006644_RTM1035_00655"
                     /db_xref="CDD:29996"
                     /translation="MSLSYLETSLDRIDAAARGDVIEICINPDGTCWGEFQGDHFMRA
                     LDQRLTGVQVRDLGNQIASSANTTMSKDRPIVSVSITYKGRPIRAQVITPPAVLSAMS
                     ISLRFFSSLPLEGIALDFLYGKERKLEDLRVEKKRALRAVVAAGLIDDALAFCVENKL
                     NMIVSGGTSTGKTVAARKILSHVPSEERIVTIEEAAELLPTQPNAVTLIANRDAEFQT
                     ADVLLTATLRMRPDRIILGEVRGKEAMTFLEAINTGHGGSMTTLHAETPQLAVQRLAI
                     AALKTEIPITYADMIQYIENSIDVIIQAGRHDGKRGITEFYLPGATEIGTSP"
     gene            complement(133498..134877)
                     /locus_tag="RTM1035_00660"
     CDS             complement(133498..134877)
                     /locus_tag="RTM1035_00660"
                     /note="COG2948 Type IV secretory pathway, VirB10
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="conjugation TrbI-like protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00660"
                     /db_xref="CDD:43663"
                     /translation="MSDTENTELEKRLAALEKGSARAPIAAQRRSPLLALIVILVIGA
                     GGALLYLLSQPDEEEALPTATPDVFQNEGDGFGAIETLPPPEPEVVFVGPDPVEPNAE
                     LLAQITALQAQIEELRNAPEPVVEEDTAAAEAIDALTAQIAALQAASEAAQQRFQDEL
                     TARDRSLEQLRMDLELAQLEASRPQPAPAGPTEDELRAREQERLRREEEARRMAELER
                     RATEERAFQERRIASPTIAFGGPSGAAETELAQRSFGEVTDFVLNGALPSTVTQAEVI
                     ANPSNTIIQGTMIQAVMETALDSSLPGQTRAVVSEDVYSVDGARLLIPRGSRLIGRYR
                     AGVDIAQRRVTIAWDRIILPDNQTVQISSFGGDELGRSGVTGFVDTRFPERFGSAALI
                     SLISAAPSAAASEVQDETAADVLEDVGDDLADATDSVIGDYLSIGPVIYVDQGARVTV
                     MVDRDLEIF"
     gene            complement(134874..135545)
                     /locus_tag="RTM1035_00665"
     CDS             complement(134874..135545)
                     /locus_tag="RTM1035_00665"
                     /note="COG3504 Type IV secretory pathway, VirB9
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="Conjugal transfer protein TrbG/VirB9/CagX"
                     /protein_id="jcventer:1101493006644_RTM1035_00665"
                     /db_xref="CDD:43450"
                     /translation="MLIALLPGLAFAEAIPRGGPNDNRVRLATYQEGQVYRLSVSLTH
                     VTTIEFGEGESIRSIIAGDTEGFEIDGVPGGQAFAIKPVARGVHTNVTVYTNRRSYYF
                     NVQEVRSPTFYVVQFRYPDDAARPTRAIAAQAPNYNYGASARTEFTPTRIWDDGTFTY
                     FAFPRNAPVPAIFRYAGGRERTVNTQTPEDGVIRVSGVNRQWVLRLGEEVVCIEAIPP
                     AEATS"
     gene            complement(135572..136228)
                     /locus_tag="RTM1035_00670"
     CDS             complement(135572..136228)
                     /locus_tag="RTM1035_00670"
                     /note="COG3736 Type IV secretory pathway, component VirB8"
                     /codon_start=1
                     /transl_table=11
                     /product="VirB8"
                     /protein_id="jcventer:1101493006644_RTM1035_00670"
                     /db_xref="CDD:33531"
                     /translation="MVATEQEIIEEELVYGALRRERLWQRLGLIGLVFGIIGCLSAAA
                     VSILDVDPPPVVVPYDPATGFALPEASVGASSVTANQAIIEAEVFRYVTDREVYNQLD
                     NDLRIRSVLRRSDGAAESGLRQIWNSANENYPPTVYGPNARLDVEILSINRIGTNRAT
                     VRLRKRLTSINGTQTGLFTTTLLFEFRPETRRSIDEVWTNPFGFTVLEYSVRSDRLEN
                     "
     gene            complement(136243..137055)
                     /locus_tag="RTM1035_00675"
     CDS             complement(136243..137055)
                     /locus_tag="RTM1035_00675"
                     /note="COG0840 Methyl-accepting chemotaxis protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00675"
                     /translation="MMGHLLLRTALATTLGVGLQFSALPPAAAQGVPVVDTQNIAQNI
                     QQLRQMIEDEILQNEQLTQLREQLGLLTDQLAELQRTYEALTRLAELPEIIRTEMEDE
                     LNGLLDQEFGDILATIEAIKTGDFSGLSGSGAGEIETQMDRVLADLGFDEDTLSEMAT
                     SGNPGANRVATQATTGALVSAAAQNSYEDAGQSLERVDRLVGLIDDMDELKESIDLNT
                     RVTAELAIALVAMWQLEAIQTVGDGTGGVIDAATIAEEQRFMDFTLPDLRAE"
     gene            complement(137052..138140)
                     /locus_tag="RTM1035_00680"
     CDS             complement(137052..138140)
                     /locus_tag="RTM1035_00680"
                     /note="COG0741 Soluble lytic murein transglycosylase and
                     related regulatory proteins (some contain LysM/invasin
                     domains)"
                     /codon_start=1
                     /transl_table=11
                     /product="Lytic transglycosylase, catalytic"
                     /protein_id="jcventer:1101493006644_RTM1035_00680"
                     /db_xref="CDD:29556"
                     /translation="MPTNDNGLTARDIVETGDREADLAVQADKLAVRELIAEIEREQL
                     ETLQRILDAQTSFGGQGLPAMVSGLESGSGDPARSVEAVYGTGEIDPNPGGEQMFGDA
                     SETIEQLIIRVAQETSGFAGVGRAGLSPVQWRALLQALIWQESRFTIGARSPVGAYGL
                     TQIMPGTASDLGINPEYYDSPYLQVHGGARYLATQLNTFDGNIINALAAYNAGPGRVF
                     EYGGVPPFRETQHYVSVIPERYNLYLTRIGGIEALGTIDPALLANANLSLTGHGAAFY
                     GNNSPAAIRQAALRIADIVERISETEDVQESVALNTYARAELVRLVAARIRLQAARTR
                     VLSAEELAQASARMAEGAFMDFTIREIE"
     gene            complement(138462..140837)
                     /locus_tag="RTM1035_00685"
     CDS             complement(138462..140837)
                     /locus_tag="RTM1035_00685"
                     /note="COG3451 Type IV secretory pathway, VirB4
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="CagE, TrbE, VirB component of type IV
                     transporter system"
                     /protein_id="jcventer:1101493006644_RTM1035_00685"
                     /db_xref="CDD:33254"
                     /translation="MPRDDAHDPAIDPRTMTPDWYARETRLAHMLPYVSLVDGQTVRT
                     RVNELFRCIRLEGINSYTTDDAYLDKVTALFARIVAQLGPEFSYYVHKVSKAIKPDLD
                     PIREDSFAGEVDRRWRAKLETSGLRDKTLTLTVIHRPPPKSLLPHLGRSAPDRLKEET
                     RKRLQRLGEAVNVFLSGLTELKPRLLSARSGELVGFLGALNTGTELPLYPANTYGFLS
                     FNVANTRVTFHGDHFELSEGVVGHRYGKSFTIGEYSEGTSCTMFDMLNLPVDMIVTHS
                     FTPINSNLMAGRIKRQKRQMQASQDAALSLLEALDIAADDLEAKRQSFGEHHMVVTLF
                     CDTLEELQALSAEIVNAAATEGVKMIGERVAAKAHYLSQHPGNQPKRVRASAVTNRNF
                     ADFAAFHRTQLGKPAALTPWGRVVTYLPTPEQSAYRFSYHEQGSPDKEPTSGHTLIMG
                     RPGSGKSVLSAFLMTQARRAGARIFVFDYRLGMEMAVRANGGRYASLNAGQPTGLNPL
                     WTETDARGTAWLSDWLTTLLYRADKPLTPAQTNRIQEVVRQNAQATNPALRNWRDFAS
                     LFVSTDDGGDLHQRLLEWTEDGRYGWIFGQSLEDTFSLKGDVVGFDLTGILDSEADKE
                     RMAVLSYLFRRVEREIEDRRPTIIVIDEAWKALDNAYFAERLSNWLVTARKQNTVAVM
                     MTQYASQLERTRTGKTIVEAVPTQILLPNIRAQPADYAMLNLTEKELDVLLNTGSNSR
                     LALIRDDQGSIVVDADLSALGPNLTILGGMEKGEALVGADYRDRPDFWRLS"
     gene            complement(140827..141105)
                     /locus_tag="RTM1035_00690"
     CDS             complement(140827..141105)
                     /locus_tag="RTM1035_00690"
                     /note="COG3702 Type IV secretory pathway, VirB3
                     components"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory pathway, VirB3-like protein"
                     /protein_id="jcventer:1101493006644_RTM1035_00690"
                     /db_xref="CDD:33497"
                     /translation="MAERSPLFLGLVRPPKLLGLPIMYAMVWLFGSVLLFVWVQHIAV
                     LGFAALLYPVLWKAADWDPRFIDVMMTALQETPPTRNRSIHGGDSYAP"
     gene            complement(141098..141391)
                     /locus_tag="RTM1035_00695"
     CDS             complement(141098..141391)
                     /locus_tag="RTM1035_00695"
                     /codon_start=1
                     /transl_table=11
                     /product="VIRB2 type IV secretion"
                     /protein_id="jcventer:1101493006644_RTM1035_00695"
                     /db_xref="CDD:46805"
                     /translation="MKQISNLFVASLALFLFIAEPALAQSIDLSPIQSLLQGIVDALT
                     GPLGVVIATLAVLGVFLSWFFNIIDLRQALWVLVGIAGVAAAPTIVAAVFAGG"
     gene            complement(141388..142002)
                     /locus_tag="RTM1035_00700"
     CDS             complement(141388..142002)
                     /locus_tag="RTM1035_00700"
                     /note="COG0741 Soluble lytic murein transglycosylase and
                     related regulatory proteins (some contain LysM/invasin
                     domains)"
                     /codon_start=1
                     /transl_table=11
                     /product="Lytic transglycosylase, catalytic"
                     /protein_id="jcventer:1101493006644_RTM1035_00700"
                     /db_xref="CDD:29556"
                     /translation="MVLVMESDGSLIPSRSQSSFARNYNDGIGQGSASDGIAIFGEVE
                     AEQEGVQVAALARPTPLPRADVLSGIQTTALRYAGHPGLRRAGLSVTDWLALYRANIE
                     VESAYRQDAISSAGAIGLGQLMPATARDLGVDPRDPLQNLDGSARYLAMMLETFGDPH
                     LALAAYNAGPDAVRQYGGVPPYRETQNHVARVMAVVARLEGSNS"
     gene            complement(142046..142414)
                     /locus_tag="RTM1035_00705"
     CDS             complement(142046..142414)