Annotation Tools

Blast GBrowse Short Sequence Search Precomputed Blast Results Download Files
   

Blast

Find regions of local similarity with Roseobacter sequences.

GBrowse

Access a web-based browser of Roseobacter genomes.

Short Sequence Search

Find short sequences in genes or intergenic regions in Roseobacter genomes.

Precomputed Blast Results

Search a database of pre-computed genome BLAST results.

Download Files

Download Roseobacter genomes and a Java-based genome browser.

 

 

UGA-Marine Sciences    Gordon and Betty Moore Foundation   National Science Foundation
 

View Roseobacter genomes in Artemis.

(Quick instructions)

1. Save the NCBI files to your local computer. (For Windows users, right click the link and choose "save as". For Mac users, hold down the Control key on your keyboard when clicking the link. Alternatively, Mac users can click and hold; that is, click once without unclicking the mouse button.)

2. Launch Artemis. Or install it from here: http://www.sanger.ac.uk/Software/Artemis/v7/

LAUNCH ARTEMIS

*Note: you must have Java Web Start installed on your computer. It's part of your Java installation for Java version 1.4 or higher. After you open the Java page, click Download Now located under "Where do you get Java Web Start".

3. Open the file you downloaded in Artemis.

 

Shalabh Sharma
Scientific Computing Professional Associate  [ssharma@uga.edu]

Dr. Mary Ann Moran
Research Professor Department of Marine Sciences  [mmoran@uga.edu]

University of Georgia
Department of Marine Sciences
Contact Us

 
 
 

This material is based upon work supported by the National Science Foundation under Grant No. 0315200.

Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s)
and do not necessarily reflect the views of the National Science Foundation.